mRNA_Ecto-sp9_F_contig11720.1436.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI) HSP 1 Score: 384 bits (987), Expect = 5.390e-129 Identity = 208/231 (90.04%), Postives = 210/231 (90.91%), Query Frame = 1
Query: 1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
T++DVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ
Sbjct: 150 TKRDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK---------------------KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 359
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: PPIase (cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW48_9PHAE) HSP 1 Score: 183 bits (465), Expect = 2.240e-52 Identity = 97/118 (82.20%), Postives = 97/118 (82.20%), Query Frame = 1
Query: 340 MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ
Sbjct: 1 MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK---------------------KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 97
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA) HSP 1 Score: 178 bits (452), Expect = 8.440e-50 Identity = 106/230 (46.09%), Postives = 140/230 (60.87%), Query Frame = 1
Query: 4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
R D+IKLNDP D+ A RD NNF HL E+RE + +H KIRQT +T+ IF+EI KR+ D ++ ++ +AAG LWKR +V ED+ G +T+ +GSFTS+A VST +++R AT +EI+ AR+ RLR L K KGY QLQT+ GNIN+E+H D+VP+ AENFLGLCEK YYDGT FHRSIR+F++Q
Sbjct: 151 RADIIKLNDPADEALCALRDANNFKHLKELREAEAKRQEQASHTSKIRQTLTTQQIFKEIEEKRQSDERDRTXXXXXXXXXXXXKDAEAVAAGAPLWKRLRVLLEDISEGTHVTTNVMAGSFTSTAQQVSTTAQSREATPEEIDRARFSRLRALKK---------------------KGYVQLQTSHGNINIEVHVDMVPKTAENFLGLCEKGYYDGTIFHRSIRHFVIQ 359
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5H9_AURAN) HSP 1 Score: 145 bits (365), Expect = 1.350e-36 Identity = 107/264 (40.53%), Postives = 139/264 (52.65%), Query Frame = 1
Query: 4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKA--AKDEEDR-----------------------KTAKEREEA--------GLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQV 696
+ D++ ++DP D A RD+ NF HL E RE R A LA D IR + S+ + E AKR AAE+A AK+ +R + AK +A GL + TT++++ G +TSG TSGSFTSSAL+V T +K R AT+DE+ ARW RLR LGK KGY QL+T+ GN+NVEIH D+VPR AENFLGLC K YYDG+ FHR +R+F+ Q
Sbjct: 152 KADLVMIHDPEDAALCARRDLANFAHLREEREAREARLATSRPEDHIRTSDSSRAVLDE--AKRNVAAAEEARSAKEAANRAAKGGNRPRYEPLKLGISHPFAAQAAKRLADADPDLPRNKGLTEAFLRVRTLGATTDEILKGSKLTSGATSGSFTSSALSVETSAKLRDATEDELKTARWKRLRGLGK---------------------KGYAQLRTSHGNLNVEIHADMVPRAAENFLGLCAKGYYDGSPFHRVVRHFVAQA 392
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A007_9STRA) HSP 1 Score: 140 bits (352), Expect = 9.830e-35 Identity = 102/243 (41.98%), Postives = 139/243 (57.20%), Query Frame = 1
Query: 4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKE--REEAGLAAGERLWKRGKV-----------TTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
++DVI L+DP DK+ V+ RD+ NF HL E R++R AEL +QT + +E+ A+ KR+ E+ A+ + AKE R+EA L A +R RG TT+++ G +TSG TSGSFTSSA+ ST + R ATDDE+ ARW LR LG+ KGY +++T+ G++NVEIHCD+VPR AENFLGLC YD T FHR +R+F+ Q
Sbjct: 247 KEDVISLHDPDDKDLVSRRDLANFWHLQEERKKRDAELGSKGS---FKQTDAQ----KEVLAEAKRNVQEREAQ-----RLAKEKARQEA-LNAPDRPENRGLTEAYLRVRQLGATTDEVTPGSKLTSGATSGSFTSSAMDRSTTAALRAATDDELKTARWKVLRSLGQ---------------------KGYARIRTSLGDLNVEIHCDMVPRAAENFLGLCRDGKYDETLFHRVVRHFVAQ 455
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R4_9STRA) HSP 1 Score: 138 bits (347), Expect = 7.160e-34 Identity = 91/247 (36.84%), Postives = 130/247 (52.63%), Query Frame = 1
Query: 1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKI----RQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERL---------WKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQVRC 702
TR+D+I L DP + +A RD++NF HL EVR E A +A + +KI R STE++ E +++ +A + + ERE L +R + EDL G+ +T+GK + SFT++ + ++T + R AT++E + R+ RKLGK KGY QLQT+ GN+N+EIHCD VPR AENFLGLC + +YDG FHR I+ FM Q C
Sbjct: 150 TRKDIITLQDPSNAAHMALRDISNFKHLEEVRAEEQARVAGASAEEKIASSIRTNASTEMVLAEFQRQQRERXXXEALRAAQAEAXXVEREXXXAXXXXXLRXXXXXXXXXRRRSILIEDLHPGKSVTTGKAAASFTATGVDLATGNTCRTATEEETREVRYKFARKLGK---------------------KGYVQLQTSLGNLNLEIHCDFVPRTAENFLGLCLRGFYDGLSFHRVIKGFMAQTGC 375
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RH75_THAOC) HSP 1 Score: 125 bits (314), Expect = 1.630e-29 Identity = 85/238 (35.71%), Postives = 135/238 (56.72%), Query Frame = 1
Query: 1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHAD-KIRQTKSTELIFREIGA-KRKRDAA-----EKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
++ DVI LNDP DK+ RD+ NF H +REE + + + + ++ + + I +++ KRKR+ A +K K EED +K+ +G + + K+ ++L+ + MTSGK SGS TS+A+ + E+ ARLAT+DEI D++ +L++L K KG ++ T +GN+++ +HCDIVPR A NF+ L + YDG+KFHRSI+NFM+Q
Sbjct: 156 SKDDVIVLNDPDDKDLQRMRDIQNFCHTKAMREENDRKQSSASGSQANVKYNLTADRILQKLDKEKRKREKASEEQAKKLLKTEEDEDVSKK---SGYSTKDL-----KIYADELISAKHMTSGKASGSLTSTAMDIQRENTARLATEDEIVDSQVEQLKRLKK---------------------KGTVRMYTNRGNMDISVHCDIVPRTALNFMLLAHQGEYDGSKFHRSIKNFMIQ 364
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ04_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.550e-29 Identity = 91/236 (38.56%), Postives = 127/236 (53.81%), Query Frame = 1
Query: 4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHAD-KIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKE----REEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQV 696
+ DV+ L DP + E +A RD+NNF HL VREE +K + KIRQ+ ST + +EI ++R+ + E K RKT +E + + ER + T D+ G++ T G+ S S TS++ + T + R AT +EI +ARW +R++GK KGY QLQTT GN+NVEIHCDI PR A NFL LCE+ Y+D HR + FM+Q
Sbjct: 143 KSDVLTLQDPQNAEQMAKRDINNFSHLKTVREES----SKTREGESKIRQSLSTSNVMKEIESQRQLEK-ESGVK----RKTLEEIISNKSTEDNSDVERFLAL-QALTLDVTPGQVSTDGRASSSLTSTSSNLWTSNATRRATAEEIREARWKIMRQVGK---------------------KGYAQLQTTHGNLNVEIHCDIAPRTAWNFLTLCERGYFDDMTLHRLVPGFMVQA 347
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBR0_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.310e-25 Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 304 KVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKA-RLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
K T ++L G TSG SGSFTSS +AV+T+SK R A+ +EI ARW R +GKKA Y QLQT++GN+NVE++ ++VP+ AENFLGLC K+YYDG FHR I+ FM+Q
Sbjct: 62 KPTQDELHPGSGETSGTASGSFTSSGVAVATDSKKMRQASVEEIRLARWRLCRSIGKKA---------------------YVQLQTSQGNLNVEVYANMVPQTAENFLGLCGKKYYDGLSFHRLIKGFMVQ 171
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSR9_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.420e-24 Identity = 82/235 (34.89%), Postives = 124/235 (52.77%), Query Frame = 1
Query: 10 DVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELA-------KVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
DVI L DP D+E RD++NFVH +R++ + A K+ D +R + + I +I KR++D E D+K K + A K+ K+ T +L G MTSG+ SGSFTS+++ +S + R AT +EI + +Y +++ + KG+ T+ G+++VEIH DIVP+ A NFLGL +++ YDG FHRSIRNFM+Q
Sbjct: 162 DVIILQDPNDEEQQRLRDISNFVHTQTMRKQEETKNAAAAVDPNKLVSGD-VRHSVTASRIMDQIKKKREQDELE-------DQKR-KRKMAASTITSTNETKKPKIYTNELQGFGNMTSGQCSGSFTSTSMNISNTNAIREATQEEILQSLFYMMKRR---------------------KQKGFVHFITSLGDVDVEIHADIVPKTAMNFLGLVDQKAYDGCIFHRSIRNFMIQ 366 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11720.1436.1 >prot_Ecto-sp9_F_contig11720.1436.1 ID=prot_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=238bp TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQback to top mRNA from alignment at Ecto-sp9_F_contig11720:441..3266+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11720.1436.1 ID=mRNA_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2826bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11720:441..3266+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11720:441..3266+ >mRNA_Ecto-sp9_F_contig11720.1436.1 ID=mRNA_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1428bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11720:441..3266+ (Ectocarpus species9 EcSCA_722f female)back to top |