mRNA_Ecto-sp9_F_contig11720.1436.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11720.1436.1
Unique NamemRNA_Ecto-sp9_F_contig11720.1436.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 5.390e-129
Identity = 208/231 (90.04%), Postives = 210/231 (90.91%), Query Frame = 1
Query:    1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            T++DVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK                     KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ
Sbjct:  150 TKRDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK---------------------KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 359          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: PPIase (cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW48_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.240e-52
Identity = 97/118 (82.20%), Postives = 97/118 (82.20%), Query Frame = 1
Query:  340 MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK                     KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ
Sbjct:    1 MTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGK---------------------KGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 97          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 8.440e-50
Identity = 106/230 (46.09%), Postives = 140/230 (60.87%), Query Frame = 1
Query:    4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            R D+IKLNDP D+   A RD NNF HL E+RE       + +H  KIRQT +T+ IF+EI  KR+ D  ++             ++   +AAG  LWKR +V  ED+  G  +T+   +GSFTS+A  VST +++R AT +EI+ AR+ RLR L K                     KGY QLQT+ GNIN+E+H D+VP+ AENFLGLCEK YYDGT FHRSIR+F++Q
Sbjct:  151 RADIIKLNDPADEALCALRDANNFKHLKELREAEAKRQEQASHTSKIRQTLTTQQIFKEIEEKRQSDERDRTXXXXXXXXXXXXKDAEAVAAGAPLWKRLRVLLEDISEGTHVTTNVMAGSFTSTAQQVSTTAQSREATPEEIDRARFSRLRALKK---------------------KGYVQLQTSHGNINIEVHVDMVPKTAENFLGLCEKGYYDGTIFHRSIRHFVIQ 359          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5H9_AURAN)

HSP 1 Score: 145 bits (365), Expect = 1.350e-36
Identity = 107/264 (40.53%), Postives = 139/264 (52.65%), Query Frame = 1
Query:    4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKA--AKDEEDR-----------------------KTAKEREEA--------GLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQV 696
            + D++ ++DP D    A RD+ NF HL E RE R A LA     D IR + S+  +  E  AKR   AAE+A  AK+  +R                       + AK   +A        GL       +    TT++++ G  +TSG TSGSFTSSAL+V T +K R AT+DE+  ARW RLR LGK                     KGY QL+T+ GN+NVEIH D+VPR AENFLGLC K YYDG+ FHR +R+F+ Q 
Sbjct:  152 KADLVMIHDPEDAALCARRDLANFAHLREEREAREARLATSRPEDHIRTSDSSRAVLDE--AKRNVAAAEEARSAKEAANRAAKGGNRPRYEPLKLGISHPFAAQAAKRLADADPDLPRNKGLTEAFLRVRTLGATTDEILKGSKLTSGATSGSFTSSALSVETSAKLRDATEDELKTARWKRLRGLGK---------------------KGYAQLRTSHGNLNVEIHADMVPRAAENFLGLCAKGYYDGSPFHRVVRHFVAQA 392          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A007_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.830e-35
Identity = 102/243 (41.98%), Postives = 139/243 (57.20%), Query Frame = 1
Query:    4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKE--REEAGLAAGERLWKRGKV-----------TTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            ++DVI L+DP DK+ V+ RD+ NF HL E R++R AEL         +QT +     +E+ A+ KR+  E+ A+     + AKE  R+EA L A +R   RG             TT+++  G  +TSG TSGSFTSSA+  ST +  R ATDDE+  ARW  LR LG+                     KGY +++T+ G++NVEIHCD+VPR AENFLGLC    YD T FHR +R+F+ Q
Sbjct:  247 KEDVISLHDPDDKDLVSRRDLANFWHLQEERKKRDAELGSKGS---FKQTDAQ----KEVLAEAKRNVQEREAQ-----RLAKEKARQEA-LNAPDRPENRGLTEAYLRVRQLGATTDEVTPGSKLTSGATSGSFTSSAMDRSTTAALRAATDDELKTARWKVLRSLGQ---------------------KGYARIRTSLGDLNVEIHCDMVPRAAENFLGLCRDGKYDETLFHRVVRHFVAQ 455          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: RING-type (E3 ubiquitin transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R4_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.160e-34
Identity = 91/247 (36.84%), Postives = 130/247 (52.63%), Query Frame = 1
Query:    1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKI----RQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERL---------WKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQVRC 702
            TR+D+I L DP +   +A RD++NF HL EVR E  A +A  +  +KI    R   STE++  E   +++     +A +  +      ERE         L          +R  +  EDL  G+ +T+GK + SFT++ + ++T +  R AT++E  + R+   RKLGK                     KGY QLQT+ GN+N+EIHCD VPR AENFLGLC + +YDG  FHR I+ FM Q  C
Sbjct:  150 TRKDIITLQDPSNAAHMALRDISNFKHLEEVRAEEQARVAGASAEEKIASSIRTNASTEMVLAEFQRQQRERXXXEALRAAQAEAXXVEREXXXAXXXXXLRXXXXXXXXXRRRSILIEDLHPGKSVTTGKAAASFTATGVDLATGNTCRTATEEETREVRYKFARKLGK---------------------KGYVQLQTSLGNLNLEIHCDFVPRTAENFLGLCLRGFYDGLSFHRVIKGFMAQTGC 375          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RH75_THAOC)

HSP 1 Score: 125 bits (314), Expect = 1.630e-29
Identity = 85/238 (35.71%), Postives = 135/238 (56.72%), Query Frame = 1
Query:    1 TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHAD-KIRQTKSTELIFREIGA-KRKRDAA-----EKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            ++ DVI LNDP DK+    RD+ NF H   +REE   + +  + +   ++   + + I +++   KRKR+ A     +K  K EED   +K+   +G +  +      K+  ++L+  + MTSGK SGS TS+A+ +  E+ ARLAT+DEI D++  +L++L K                     KG  ++ T +GN+++ +HCDIVPR A NF+ L  +  YDG+KFHRSI+NFM+Q
Sbjct:  156 SKDDVIVLNDPDDKDLQRMRDIQNFCHTKAMREENDRKQSSASGSQANVKYNLTADRILQKLDKEKRKREKASEEQAKKLLKTEEDEDVSKK---SGYSTKDL-----KIYADELISAKHMTSGKASGSLTSTAMDIQRENTARLATEDEIVDSQVEQLKRLKK---------------------KGTVRMYTNRGNMDISVHCDIVPRTALNFMLLAHQGEYDGSKFHRSIKNFMIQ 364          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ04_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.550e-29
Identity = 91/236 (38.56%), Postives = 127/236 (53.81%), Query Frame = 1
Query:    4 RQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHAD-KIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKE----REEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQV 696
            + DV+ L DP + E +A RD+NNF HL  VREE     +K    + KIRQ+ ST  + +EI ++R+ +  E   K    RKT +E    +     +  ER     +  T D+  G++ T G+ S S TS++  + T +  R AT +EI +ARW  +R++GK                     KGY QLQTT GN+NVEIHCDI PR A NFL LCE+ Y+D    HR +  FM+Q 
Sbjct:  143 KSDVLTLQDPQNAEQMAKRDINNFSHLKTVREES----SKTREGESKIRQSLSTSNVMKEIESQRQLEK-ESGVK----RKTLEEIISNKSTEDNSDVERFLAL-QALTLDVTPGQVSTDGRASSSLTSTSSNLWTSNATRRATAEEIREARWKIMRQVGK---------------------KGYAQLQTTHGNLNVEIHCDIAPRTAWNFLTLCERGYFDDMTLHRLVPGFMVQA 347          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Peptidyl-prolyl (cis-trans isomerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FBR0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.310e-25
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 1
Query:  304 KVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKA-RLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            K T ++L  G   TSG  SGSFTSS +AV+T+SK  R A+ +EI  ARW   R +GKKA                     Y QLQT++GN+NVE++ ++VP+ AENFLGLC K+YYDG  FHR I+ FM+Q
Sbjct:   62 KPTQDELHPGSGETSGTASGSFTSSGVAVATDSKKMRQASVEEIRLARWRLCRSIGKKA---------------------YVQLQTSQGNLNVEVYANMVPQTAENFLGLCGKKYYDGLSFHRLIKGFMVQ 171          
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSR9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.420e-24
Identity = 82/235 (34.89%), Postives = 124/235 (52.77%), Query Frame = 1
Query:   10 DVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELA-------KVAHADKIRQTKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKRGKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWYRLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIVPRMAENFLGLCEKEYYDGTKFHRSIRNFMLQ 693
            DVI L DP D+E    RD++NFVH   +R++   + A       K+   D +R + +   I  +I  KR++D  E       D+K  K +  A         K+ K+ T +L G   MTSG+ SGSFTS+++ +S  +  R AT +EI  + +Y +++                      + KG+    T+ G+++VEIH DIVP+ A NFLGL +++ YDG  FHRSIRNFM+Q
Sbjct:  162 DVIILQDPNDEEQQRLRDISNFVHTQTMRKQEETKNAAAAVDPNKLVSGD-VRHSVTASRIMDQIKKKREQDELE-------DQKR-KRKMAASTITSTNETKKPKIYTNELQGFGNMTSGQCSGSFTSTSMNISNTNAIREATQEEILQSLFYMMKRR---------------------KQKGFVHFITSLGDVDVEIHADIVPKTAMNFLGLVDQKAYDGCIFHRSIRNFMIQ 366          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11720.1436.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type5.390e-12990.04E3 ubiquitin transferase n=1 Tax=Ectocarpus silicu... [more]
PPIase2.240e-5282.20cyclophilin-type domain-containing protein n=1 Tax... [more]
RING-type8.440e-5046.09E3 ubiquitin transferase n=1 Tax=Tribonema minus T... [more]
RING-type1.350e-3640.53E3 ubiquitin transferase n=1 Tax=Aureococcus anoph... [more]
RING-type9.830e-3541.98E3 ubiquitin transferase (Fragment) n=3 Tax=Pelago... [more]
RING-type7.160e-3436.84E3 ubiquitin transferase n=2 Tax=Monodopsidaceae T... [more]
Uncharacterized1.630e-2935.71protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
Hypothetical3.550e-2938.56protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
Peptidyl-prolyl7.310e-2548.09cis-trans isomerase (Fragment) n=1 Tax=Dictyocha s... [more]
Hypothetical3.420e-2434.89protein (Fragment) n=1 Tax=Ditylum brightwellii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11720contigEcto-sp9_F_contig11720:441..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue1e-104
Seed eggNOG ortholog2880.D8LLL2
Preferred namePPIL2
KEGG koko:K06532,ko:K10598
KEGG Pathwayko04120,ko05202,map04120,map05202
GOsGO:0000003,GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0002376,GO:0003006,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007530,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016477,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0018992,GO:0019538,GO:0019787,GO:0022414,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0034450,GO:0034613,GO:0034641,GO:0036211,GO:0040011,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0048870,GO:0050900,GO:0051179,GO:0051641,GO:0051674,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0070727,GO:0071704,GO:0071944,GO:0072657,GO:0072659,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990778
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0883@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110,ko04090,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-04_005350.1
Exons5
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11720.1436.1prot_Ecto-sp9_F_contig11720.1436.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11720 441..3266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928431.5021446-CDS-Ecto-sp9_F_contig11720:440..6161622928431.5021446-CDS-Ecto-sp9_F_contig11720:440..616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 441..616 +
1692277868.776747-CDS-Ecto-sp9_F_contig11720:440..6161692277868.776747-CDS-Ecto-sp9_F_contig11720:440..616Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 441..616 +
1622928431.513959-CDS-Ecto-sp9_F_contig11720:1098..11791622928431.513959-CDS-Ecto-sp9_F_contig11720:1098..1179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 1099..1179 +
1692277868.788271-CDS-Ecto-sp9_F_contig11720:1098..11791692277868.788271-CDS-Ecto-sp9_F_contig11720:1098..1179Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 1099..1179 +
1622928431.52538-CDS-Ecto-sp9_F_contig11720:1863..19931622928431.52538-CDS-Ecto-sp9_F_contig11720:1863..1993Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 1864..1993 +
1692277868.7989569-CDS-Ecto-sp9_F_contig11720:1863..19931692277868.7989569-CDS-Ecto-sp9_F_contig11720:1863..1993Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 1864..1993 +
1622928431.5362115-CDS-Ecto-sp9_F_contig11720:2266..24161622928431.5362115-CDS-Ecto-sp9_F_contig11720:2266..2416Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 2267..2416 +
1692277868.8062816-CDS-Ecto-sp9_F_contig11720:2266..24161692277868.8062816-CDS-Ecto-sp9_F_contig11720:2266..2416Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 2267..2416 +
1622928431.550222-CDS-Ecto-sp9_F_contig11720:3089..32661622928431.550222-CDS-Ecto-sp9_F_contig11720:3089..3266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 3090..3266 +
1692277868.8137467-CDS-Ecto-sp9_F_contig11720:3089..32661692277868.8137467-CDS-Ecto-sp9_F_contig11720:3089..3266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11720 3090..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11720.1436.1

>prot_Ecto-sp9_F_contig11720.1436.1 ID=prot_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=238bp
TRQDVIKLNDPGDKEFVASRDVNNFVHLSEVREERVAELAKVAHADKIRQ
TKSTELIFREIGAKRKRDAAEKAAKDEEDRKTAKEREEAGLAAGERLWKR
GKVTTEDLVGGRIMTSGKTSGSFTSSALAVSTESKARLATDDEINDARWY
RLRKLGKKARRRITETAFRLQQRQGIRSKGYCQLQTTKGNINVEIHCDIV
PRMAENFLGLCEKEYYDGTKFHRSIRNFMLQVRCLCT*
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mRNA from alignment at Ecto-sp9_F_contig11720:441..3266+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11720.1436.1 ID=mRNA_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2826bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11720:441..3266+ (Ectocarpus species9 EcSCA_722f female)
ACACGCCAGGACGTGATCAAGCTCAACGACCCGGGAGACAAGGAGTTCGT GGCCTCGAGGGATGTTAACAACTTCGTGCACCTTTCGGAGGTGCGGGAGG AGCGTGTGGCAGAGCTTGCCAAGGTGGCGCACGCGGACAAGATCCGACAG ACCAAGTCCACCGAGCTCATATTCAGGTGCATAAAGGGGGCGGGGGGGGT CGTTGGGGCTTGTTACTCCTTTTTCTCTATCTTGATCGTCTTCCACGGCG AACCGGATGCAGGAAAATAAGCTATGTATTTCGCTCTTGATCCCGCTACT TTCCGAATAAAACTGCTCCGATTGCGTAGCATGTTGCCACGAGTTTGGAA TCTTGTTCTGCTGCAGAACACAGCCTTTTTTTACTTGCGCGACTTAGATG TTGATCCAATCGTCCGGTTCTGTCATAAGTATGTGCTGCATCTACGCCCA GGTGTACTACTAGACTACGTCTTGCCGCGCTACGTTTCTCAGAAGCACCA CGACCATTAATAGTGAAGAACGACAACCACCACCCCGTGTAAATCTTAAA TTTCTGGTCCTTAATGACACCTTGCTCGATGTTGGTATGCGTTTGTTGGT TGTGCGGTCCTGAGATGATCTCTCTCCGTTTCTTGTGTACCTGCCCGGGT TCGTGCAGGGAGATTGGTGCGAAGCGCAAGCGAGACGCGGCAGAGAAGGC GGCGAAGGATGAAGAGGACAGAAAAACCGCCAAGGAGAGGTGGGGAAACG GGTATTTGTTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGTTG CTGCCTCTGTTGATCTTGATCTTGATCTTGATACTACTGGTGCTGTTTCG TTGTTGTCGTCGTGTCGCTGTTGTGGGTGATGCCGGAAACGGATTGCCCT CTTTTCCCCGCGCTTCCATGTCAAGAACGATCACCTCTGCCCGGTGGTAT CATTCCGGTCGAAGAAGATCGAAACACTCCTCCATCCGCAGTCGGCCTGA AAGACAACCGACCGAAACCGAAACAAAGCGGAGATTAGAAAGGATAGAAA ACAAGAACGTATTCACCTTGACTGCGTCCGTTTTGCACAAAGCTCGAAAA GCTCTGTCTTGAATGGCGTGAACTCGCGACCGTGATGGCGTTTGTATAAT AGCTTGTATTCGTGTACGATCAACATAGCGTGCAACGTGTCTGCGAGCGA CATGTGCTATGTACGGCACTAGACCTTATAGGCAAGAGAGTAGTCAGCAA CAGCAACAGCAACAGCAACGCCCCAAAGAACTTCTCCGCGCCACCACGAA TACGTCCCGTGTGTACCCCCCTCCCCCCCCCGCTCATTGTTTCACATTTC AAGTATAACACAAGATGTTCCGTGTGTGCCCCCCCTCCCCCCGCTCATTG ACGGTTCACAAAAAACGCCAAAGGGAGGAGGCCGGGCTTGCTGCGGGGGA GAGGCTGTGGAAGCGAGGCAAGGTGACGACGGAAGATCTTGTCGGGGGCA GGATCATGACCAGCGGGAAGACGTCGGGCTCCTTCACCTCCAGCGCGCTT GCGGTAAGAAGAATGGGGGAGCGGCTCTCCTCTGTCACGTTTTCTACGGC GGTGAAAGACAGGGAAAGAAAGGCGATCATCCTCGGATCACCAACGCTTC GTTTGTCTACAGCAGTGTTCCCTCCTGATTTGCCAACTCCATTGGTCCTC CTTGCCCATTATCTCTTGCTCTCTCGTCTAACGGTGTTTGCTTCGTGTTC TTTGTTATTTCGAGGTTTTATTTTTTGGGTAAATGCTAGTTTCCGATATG CTGATATGTTCTTCGTGTGTTGTCAGGTGAGCACGGAGAGCAAAGCCCGC CTTGCCACGGACGACGAAATCAACGACGCGCGCTGGTACCGCCTCCGAAA ACTTGGGAAGAAGGCAAGACGAAGAATAACAGAAACCGCTTTTAGACTGC AGCAGCGTCAGGGCATTAGGTCTAAGGTCGTGAGGTTTGTAAGTTGGGTA GGGGTGGAGGGACTACACCCAACGCACATTCATGCTCAGAGGCGGCTGGG TAGATATGAGAAAGACAGGGACAACATAAAGAGGGACAACCACCGAGAAA AGAGGTAAAAGGGCACGGGCATGCAAGTTTGAGAAGTGGGAAGAGACACC TTACGTCCGTGAAGCGCAGACCCCCCGTCGGGACAGCCGGCAGGATAGAA GAAGGCCTTGTGGCGCTTTTTACCCCGCTGAGACTGACTTTACGTATTTT AAATACCCGGCGGGTGACCGAGGTCGATGCTTTGTAGCAGTCCTTCAAAG CTACACACTTGTAGCGACGACGGTGGCATCTTGATTTCTATCGACCATCG TGCCAGGGCGCGACGAAAAGAACAAGACGTATCCTTCACTCGTTGGATGG TTTGTATGTCGAATTGCCAGCATCGAGTGATGTGTCGATTGGAAGTTGCA TCCGTACGCCCTCAGCAAATTCTGCCTTCATTCGGACATGCCGTGCTGCC CCTGCTACTGTGACACACTACTAAGTTCTGATATCGATGCTTGCCACGTC GTCATTCTCTGAGTCCTAATATCGATGCGTACCACGTCGTCATTCCCTAA TCCTGTCATGTCGACGCTTACGACGGGGGGGGACCGCACCGAACAACAGG GGTACTGCCAGCTTCAGACCACCAAGGGGAACATCAACGTCGAGATACAC TGCGACATCGTTCCGCGCATGGCGGAGAACTTCCTGGGGCTGTGTGAGAA GGAGTACTACGACGGGACCAAGTTCCACCGAAGCATTCGTAATTTCATGC TTCAGGTACGTTGCCTCTGCACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11720:441..3266+

>mRNA_Ecto-sp9_F_contig11720.1436.1 ID=mRNA_Ecto-sp9_F_contig11720.1436.1|Name=mRNA_Ecto-sp9_F_contig11720.1436.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1428bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11720:441..3266+ (Ectocarpus species9 EcSCA_722f female)
ACACGCCAGGACGTGATCAAGCTCAACGACCCGGGAGACAAGGAGTTCGT
GGCCTCGAGGGATGTTAACAACTTCGTGCACCTTTCGGAGGTGCGGGAGG
AGCGTGTGGCAGAGCTTGCCAAGGTGGCGCACGCGGACAAGATCCGACAG
ACCAAGTCCACCGAGCTCATATTCAGACACGCCAGGACGTGATCAAGCTC
AACGACCCGGGAGACAAGGAGTTCGTGGCCTCGAGGGATGTTAACAACTT
CGTGCACCTTTCGGAGGTGCGGGAGGAGCGTGTGGCAGAGCTTGCCAAGG
TGGCGCACGCGGACAAGATCCGACAGACCAAGTCCACCGAGCTCATATTC
AGGGAGATTGGTGCGAAGCGCAAGCGAGACGCGGCAGAGAAGGCGGCGAA
GGATGAAGAGGACAGAAAAACCGCCAAGGAGAGGGAGATTGGTGCGAAGC
GCAAGCGAGACGCGGCAGAGAAGGCGGCGAAGGATGAAGAGGACAGAAAA
ACCGCCAAGGAGAGGGAGGAGGCCGGGCTTGCTGCGGGGGAGAGGCTGTG
GAAGCGAGGCAAGGTGACGACGGAAGATCTTGTCGGGGGCAGGATCATGA
CCAGCGGGAAGACGTCGGGCTCCTTCACCTCCAGCGCGCTTGCGGGAGGA
GGCCGGGCTTGCTGCGGGGGAGAGGCTGTGGAAGCGAGGCAAGGTGACGA
CGGAAGATCTTGTCGGGGGCAGGATCATGACCAGCGGGAAGACGTCGGGC
TCCTTCACCTCCAGCGCGCTTGCGGTGAGCACGGAGAGCAAAGCCCGCCT
TGCCACGGACGACGAAATCAACGACGCGCGCTGGTACCGCCTCCGAAAAC
TTGGGAAGAAGGCAAGACGAAGAATAACAGAAACCGCTTTTAGACTGCAG
CAGCGTCAGGGCATTAGGTCTAAGGTGAGCACGGAGAGCAAAGCCCGCCT
TGCCACGGACGACGAAATCAACGACGCGCGCTGGTACCGCCTCCGAAAAC
TTGGGAAGAAGGCAAGACGAAGAATAACAGAAACCGCTTTTAGACTGCAG
CAGCGTCAGGGCATTAGGTCTAAGGGGTACTGCCAGCTTCAGACCACCAA
GGGGAACATCAACGTCGAGATACACTGCGACATCGTTCCGCGCATGGCGG
AGAACTTCCTGGGGCTGTGTGAGAAGGAGTACTACGACGGGACCAAGTTC
CACCGAAGCATTCGTAATTTCATGCTTCAGGTACGTTGCCTCTGCACGTA
AGGGTACTGCCAGCTTCAGACCACCAAGGGGAACATCAACGTCGAGATAC
ACTGCGACATCGTTCCGCGCATGGCGGAGAACTTCCTGGGGCTGTGTGAG
AAGGAGTACTACGACGGGACCAAGTTCCACCGAAGCATTCGTAATTTCAT
GCTTCAGGTACGTTGCCTCTGCACGTAA
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