mRNA_Ecto-sp9_F_contig11096.948.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: DUF1995 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBB0_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 6.410e-157 Identity = 230/232 (99.14%), Postives = 231/232 (99.57%), Query Frame = 1
Query: 1 QGAVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDALLMSFIGRGTGVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGSRYKRVS 696
QGAVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDAL MSF+GRGTGVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGSRYKRVS
Sbjct: 34 QGAVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDALFMSFVGRGTGVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGSRYKRVS 265
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: DUF1995 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH17_9STRA) HSP 1 Score: 290 bits (742), Expect = 3.490e-95 Identity = 146/230 (63.48%), Postives = 184/230 (80.00%), Query Frame = 1
Query: 7 AVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDALLMSFIGRGTGVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A A +DG+ LVEVEFPPL D++ED+ SSAYD+S ANVRLAS+F + F+ EGK VS+LLPDE EL++A +DEG E+ V L T RS+ K TA +LD + F G +G + PI TD+YVA++FSCQELPDL++L++ P+ IVFFNL+LD+ RGDLGLPAFPPKSLHY+FLSQIKPVYLLRTRAYS+++++ P+LVNYQGAQFRVYPG YQ LLD+GS RYK+V
Sbjct: 35 AANKAIQDGYKLVEVEFPPLSVDFMEDTSSSAYDISRANVRLASQFGEFFSIEGKRVSVLLPDEPELERAVEDEGTDELFPRVKLTTARSNIKGTAQSLDQIFSGFFGGKSGEVVPIPNTDMYVAIIFSCQELPDLRKLHEADPEKPIVFFNLKLDSQRGDLGLPAFPPKSLHYEFLSQIKPVYLLRTRAYSKSLARPPYLVNYQGAQFRVYPGAYQSLLDIGSARYKQV 264
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IJG4_9STRA) HSP 1 Score: 224 bits (572), Expect = 8.600e-69 Identity = 123/230 (53.48%), Postives = 159/230 (69.13%), Query Frame = 1
Query: 19 AFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSG---KRTAATLDALLMSFIGRGT-GVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A +DG+ L+EVEFPPL + LE SAYDV+ AN+ LA FA+SFA K V+I+LPDE EL A +D+G GVT+ +LR S K D L ++ G G+ G ++ +EGTD+YV +V S QELPD++EL++L P+ IVF+NL+LD LRGDLG PAFP K FLSQ+KPVY LRTR YSR+ ++ PF+VNYQG FR YPG+YQ LLD G+ RY+RV
Sbjct: 89 AMDDGYRLIEVEFPPLPANVLEMDDVSAYDVAKANLNLAIDFAKSFAQNNKRVTIMLPDEDELGIALEDQGTDTPYPGVTVSSLRRSEGEEKERVFKPDQLFLNLFGTGSSGSVKAMEGTDVYVCIVASAQELPDIEELSELEPNKTIVFYNLKLDVLRGDLGAPAFPGKDFQDRFLSQVKPVYYLRTRQYSRSTARPPFMVNYQGCLFRSYPGQYQTLLDTGNGRYRRV 318
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWU4_9STRA) HSP 1 Score: 220 bits (561), Expect = 2.020e-68 Identity = 117/220 (53.18%), Postives = 150/220 (68.18%), Query Frame = 1
Query: 40 LVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDALLMSFIGRGTGV-IEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
++E+EFPPL D++E SAYDVSSANVRLA FA+SFA EGK V+I+ PD AE D+A + G E + LR L T ++ ++M G+ G + + D+Y+ LVFS QELPDL+ L+ P +V NL+LDTLRGDLGLPAFPPK L Y FLSQ+ PVY LRTR YS++I+K PFLVNYQGA FR +PG +Q +LDVG +Y+RV
Sbjct: 1 MMEIEFPPLPTDFMESPECSAYDVSSANVRLAIDFAKSFATEGKRVAIMFPDRAESDRAIETHGADEPFTNIILRPLAGPAPGTTSSPVDIVMGLFGKQGGRNVNAVPDADMYICLVFSAQELPDLEALHMADPSKPLVMMNLKLDTLRGDLGLPAFPPKDLQYRFLSQVLPVYYLRTRTYSKSITKPPFLVNYQGALFRAFPGGWQSMLDVGGGKYRRV 220
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIG6_TRICV) HSP 1 Score: 222 bits (566), Expect = 2.410e-68 Identity = 122/230 (53.04%), Postives = 156/230 (67.83%), Query Frame = 1
Query: 19 AFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSG---KRTAATLDALLMSFIGRGT-GVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A +DG L+EVEFPPL LE SAYD++ ANV LA FA+SFA GK V+I+LPDEAE + A D +G GV + +LR S K D L ++ G G+ G ++ +EGTD+Y+ LV S QELPD++EL++L PD IVF+NL+LD LRGDLG PAFP K FLS +KPVY LRTR YSR+ ++ PF+VNYQG FR YPG++Q LLD G+ RY+RV
Sbjct: 52 AIDDGHKLIEVEFPPLPAQVLEMDDVSAYDIAKANVNLAVDFAKSFAQNGKRVTIMLPDEAEAEIAVDSQGTDAPYPGVAISSLRRSEGEEKDRVFKPDQLFLNLFGGGSQGSVKAVEGTDMYIILVASAQELPDVEELSELEPDKTIVFYNLKLDILRGDLGAPAFPSKEFQDRFLSSVKPVYYLRTRQYSRSTARPPFMVNYQGCLFRSYPGQFQTLLDTGNGRYRRV 281
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QDH7_9STRA) HSP 1 Score: 221 bits (562), Expect = 2.320e-67 Identity = 123/230 (53.48%), Postives = 159/230 (69.13%), Query Frame = 1
Query: 19 AFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEIS-KGVTLRTLRSSGKRTAATL--DALLMSFIGRGTG-VIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A +DGF LVEVEFPPL LE SAYDVS AN++LA FA+SFA + K+V+ILLPDEAE + A DD G ++ GV + +LR S + + + + +S G+G+G ++ +E D+YV +V S QELPD++EL+ L P+ IVF+NL+LD LRGDLG PAFPPK FLS++KPVY LRTR YSR+ PFLVNYQG FR YPG++Q LLD GS Y+RV
Sbjct: 83 AIDDGFRLVEVEFPPLPASVLEMDDVSAYDVSQANLKLAIDFAKSFAQDNKKVAILLPDEAEANIAIDDLGLSDVPYPGVKISSLRKSDEDDDRSFKPEQIFLSLFGQGSGGTVKAMEDVDMYVCIVASAQELPDIEELSLLEPEKPIVFYNLKLDVLRGDLGAPAFPPKDFQDRFLSRVKPVYYLRTRQYSRSTPNPPFLVNYQGCLFRSYPGQFQTLLDTGSGNYRRV 312
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: DUF1995 (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSK6_NANGC) HSP 1 Score: 221 bits (562), Expect = 2.590e-67 Identity = 115/227 (50.66%), Postives = 154/227 (67.84%), Query Frame = 1
Query: 19 AFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEISKGVTLRTLRSSGKRTAATLDALLMSFIGRGT-GVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A +DG+ L+EVEFPPL + SSA + SAN+ LA+ AQ F EGK+V IL+PD+ ELD + G + S VT+R +R+ +A T+ L++ R G + P DIY++++ S QELPDL+ L++ P ++FFNL L+T RGDLGLPAFP K LHY FLS IKPVYLLRTR Y++T+S+ PF++NYQGA FR YPG YQC+LD G+ RY+RV
Sbjct: 92 AIKDGYKLLEVEFPPLPAAEMASQASSANSIGSANINLANEMAQYFVREGKQVVILVPDKDELDLIEEGLGTLSPSPNVTIRAVRARNSESADTMGELILGIFSRAAKGKVLPWYNADIYISVISSGQELPDLEALHQADPTKPLIFFNLNLETHRGDLGLPAFPSKDLHYRFLSNIKPVYLLRTRQYAQTLSRPPFILNYQGALFRTYPGGYQCMLDTGNGRYRRV 318
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXL7_9STRA) HSP 1 Score: 217 bits (553), Expect = 1.950e-66 Identity = 117/234 (50.00%), Postives = 165/234 (70.51%), Query Frame = 1
Query: 7 AVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADD-EGGVEISKGVTLRTLRSS--GKRTAATLDALLMSFIGRGTGVIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIV-FFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A + A +DG L+E+EFPPL LE SAY+V+ AN++LA ++++FAAEGK+V+ILLPDEAE + ++ GG GV++ +LR S G + L +S +G +GV++P++GTD+Y+ +V S QELPD++EL K + D K++ +NL+LD LRGDLG PAFP K H FLSQ++PVY LRTR YSR+I++ P+LVNYQG FR YPG++Q LLD G+ Y+RV
Sbjct: 44 ATKQAIDDGERLIEIEFPPLPAQVLEMDDVSAYEVTEANLKLAIDYSKAFAAEGKKVTILLPDEAEANIVTENIGGGRNPHPGVSISSLRRSEEGDDRIFKPEQLFLSLLGGKSGVVKPVDGTDMYIIIVASAQELPDVEELAKQLDDDKVICMYNLKLDILRGDLGAPAFPSKEFHDRFLSQVRPVYYLRTRQYSRSIAQPPYLVNYQGCLFRTYPGQFQTLLDAGNGSYRRV 277
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: Hypothetical (protein n=2 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PW18_9STRA) HSP 1 Score: 214 bits (546), Expect = 1.750e-64 Identity = 119/230 (51.74%), Postives = 160/230 (69.57%), Query Frame = 1
Query: 19 AFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADDEGGVEIS-KGVTLRTLRSSGKRTAATL--DALLMSFIGRGTG-VIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAKIVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A DG L+EVEFPPL + LE SAYDV+ AN++LA FA++FA EGK+V++LLPDEAE + A ++ GG + VT+ +LR S + + +L+S G G+G +++ I T++YV +V S QELPD++EL+ L PDA IVF+NL+LD LRGDLG PAFP K FLS++KPVY LRTR YSR+ PF+VNYQG FR YPG++Q LLD G+ +Y+RV
Sbjct: 124 AMADGNKLIEVEFPPLPANVLELDDVSAYDVAQANLKLALDFAKNFAQEGKKVAVLLPDEAEANIAIENNGGTDNPYPDVTISSLRRSDENDERIFKPEQVLLSLFGNGSGGLVKVIPDTNMYVCIVASAQELPDIEELHGLDPDATIVFYNLKLDILRGDLGAPAFPSKEFQDRFLSEVKPVYYLRTRQYSRSTPNPPFMVNYQGCLFRSYPGQFQTLLDTGNGKYRRV 353
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Match: DUF1995 (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6X7_THAPS) HSP 1 Score: 212 bits (540), Expect = 2.090e-64 Identity = 122/241 (50.62%), Postives = 164/241 (68.05%), Query Frame = 1
Query: 7 AVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQSFAAEGKEVSILLPDEAELDQAADD-EGGVEISKGVTLRTLRSS--GKRTAATLDALLMSFIGRGTG-VIEPIEGTDIYVALVFSCQELPDLQELNKLVPDAK-------IVFFNLRLDTLRGDLGLPAFPPKSLHYDFLSQIKPVYLLRTRAYSRTISKKPFLVNYQGAQFRVYPGEYQCLLDVGS-RYKRV 693
A ++A DG+ L+EVEFPPL + LE SAYDV+ ANV LA FA+SFA+ G +V+I+LPDE+E + +D + G + GVTL +LR S G + LL+ +GRG+G ++PIEGT++Y+ +V S QELPD++EL + D K IVF+NL+LD LRGDLG PAFP K FLS++KPVY LRTR YSR+ +K PF++N+QG FR YPG YQ LLD G+ RY++V
Sbjct: 40 AAQNAIGDGYRLLEVEFPPLPANVLEMDDVSAYDVAKANVNLALDFAKSFASTGSQVAIMLPDESECNIMLEDLKVGDKPYPGVTLTSLRRSEEGDTRVFEPENLLIGLMGRGSGGTVKPIEGTNMYIVIVASAQELPDVEELYDQIKDTKEGEEQPVIVFYNLKLDVLRGDLGAPAFPGKDFQDRFLSRVKPVYYLRTRQYSRSTNKPPFILNFQGCIFRSYPGHYQTLLDTGTGRYRKV 280 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11096.948.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig11096.948.1 >prot_Ecto-sp9_F_contig11096.948.1 ID=prot_Ecto-sp9_F_contig11096.948.1|Name=mRNA_Ecto-sp9_F_contig11096.948.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=232bp QGAVEDAFEDGFNLVEVEFPPLQQDYLEDSGSSAYDVSSANVRLASRFAQback to top mRNA from alignment at Ecto-sp9_F_contig11096:644..3997+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig11096.948.1 ID=mRNA_Ecto-sp9_F_contig11096.948.1|Name=mRNA_Ecto-sp9_F_contig11096.948.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3354bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11096:644..3997+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11096:644..3997+ >mRNA_Ecto-sp9_F_contig11096.948.1 ID=mRNA_Ecto-sp9_F_contig11096.948.1|Name=mRNA_Ecto-sp9_F_contig11096.948.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1392bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11096:644..3997+ (Ectocarpus species9 EcSCA_722f female)back to top |