mRNA_Ecto-sp8_S_contig1050.786.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI) HSP 1 Score: 424 bits (1091), Expect = 1.280e-149 Identity = 219/232 (94.40%), Postives = 223/232 (96.12%), Query Frame = 1
Query: 1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLYMFSAPDQGGAXXXXXXXGGR 696
MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATL+DASQMEEL+ANDGLYL+RVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKS VGPLASTRNCTKMPV EYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLL+MFSAPDQGGA GGR
Sbjct: 1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPDQGGAATPPAAGGGR 232
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S4D4Q0_HETAK (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q0_HETAK) HSP 1 Score: 94.0 bits (232), Expect = 1.680e-19 Identity = 65/185 (35.14%), Postives = 104/185 (56.22%), Query Frame = 1
Query: 67 LSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQ---DASQMEELVANDGLYLVRVATDESS--NQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKE---QIGTKDAKAA-GNQSLL 594
L VEH+F ++++ R E+ I P + LQ + + +Q+++L+AN G Y +R+ ++ ++ + V+AA+SAC L A+FREEI LH++ I+G+ Y +P LA R+C P+ E + TK+ V A+ QSVPLQ PPPGL+ L++ G +D K +QS L
Sbjct: 52 LQVEHSFTEDSKFSPREDWEMAISPVSRQLTVDKLQGSAQSSGMERNQIKDLIANGGFYRIRLHSNPTNPDSPMVMAAISACDLHKANFREEIVLHLDPHQNIIGMTYSAPSSVLA--RDCHSKPLPEDIKFDTKIKVAEASIGQSVPLQAQAARPPPGLAGLQKFRAAAGGEDGKGGPASQSFL 234
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S2S2Z1_9STRA (ER membrane protein complex subunit 10 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2Z1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.360e-15 Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 1
Query: 67 LSVEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNC--TKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQS--------LLVKYWYIFLPCVLLYMFSA--PDQG 660
L+VEH+FGP W RG + L ++ + K FS + D + L+ N+G Y VR+ + + + + A++ AC L FRE + H++++ ++G D+ P+ TR C +K L+ ++V+K Q VP + P G SA T + A G+ L KYWY+FLP VL+ + P++G
Sbjct: 33 LAVEHSFGPGV-WKERGTIGLTVNTEKKKVALRFSTTSLNFEKDDREAFDALLKNNGFYRVRIRS-QFGDSWLTASIPACVLAAGHFRENLRFHIDKNAALIGFDHI----PVVKTRGCDASKYLGLDSIKLVSKGSASLPQEGQHVPKNAIPVGIPQG-SAGANVAQTMEKSAGGDSGEKQEEEPHFLRKYWYVFLPLVLISVLGPGPPEEG 238
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S3PTA5_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PTA5_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.600e-11 Identity = 62/228 (27.19%), Postives = 106/228 (46.49%), Query Frame = 1
Query: 73 VEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLQDASQMEELVANDGLYLVRVAT--DESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVT--KVVVVRAASAQSVPLQV----------------LQNSPPPGLSALKE-QIGTKDAKAAG----NQSLLVKYWYIFLPCVLLYMF--SAPDQGGA 666
++H+F ++ RG L + + K FS+ + + M++LV N+ LY VR+ D+ S+ +VA++ ACQ+ F+E H+++ G I + S K P E S+ ++ K VV+++ + S+P + + N PP ++E + +KD K A NQS + KYWY+FLP +L+ +F S Q GA
Sbjct: 57 IQHSFSYDGQFVDRGKLLVQVMKKSKKISIKFSSKTYEFSSDEMKGMKKLVENNRLYRVRIPLKPDDPSSPWLVASIPACQMLENDFKESFRFHLDKSGTITSFELSS------------KTPSRECSQGLSFPKSVVLKSKAVASIPKEAHGAPKRGGLNDSKGAKVANMPPELQGVIEENKPKSKDGKEAEEEAENQSFVRKYWYLFLPMLLMSVFGGSPEPQAGA 272
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A6P8SKT0_GEOSA (ER membrane protein complex subunit 10 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SKT0_GEOSA) HSP 1 Score: 64.3 bits (155), Expect = 9.850e-9 Identity = 58/213 (27.23%), Postives = 100/213 (46.95%), Query Frame = 1
Query: 58 ARSLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQG 660
A + +EH+F + +T RG L +P+ + + S + T ++ ++ ++ + +G+Y +R+ DE S QHV + V AC + + ++IT+H + G I+GV + G +CT V + E+ V V+ A +VP +A E++ + A+ A N +S KYW +P VL M S APD G
Sbjct: 40 ALEVQLEHSFELDSSIRFTKRG--SLLWNPASEGSVTISQKQLTEEERIKLRDIASLNGVYRIRIPRKPGLDEGSVQHVTSFVPACSMVESHLSDQITIHTDLAGNIIGVSIVTVPG------SCTGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDTG 234
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A8C8S1I8_9SAUR (ER membrane protein complex subunit 10 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8S1I8_9SAUR) HSP 1 Score: 62.4 bits (150), Expect = 4.930e-8 Identity = 56/213 (26.29%), Postives = 96/213 (45.07%), Query Frame = 1
Query: 64 SLSVEHAFGP--AAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRVAT------DESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
SL +EH+F P + + RG L + P + S + + + ++ S++ ++ A +GLY VR+ +E+ ++V + V AC L + +++T+H + G ++GV + G E +V + Q VP V P +A E++ + A+ A N +S KYW +P VL M S APD GG
Sbjct: 46 SLQLEHSFEPDDSIHFRKRGTLLWSLAPE--SSLSLTQKQLSEEEHSKLRDVAALNGLYRVRIPRQPLGIGEEAGAEYVSSFVRACSLVDSHLSDQLTVHTDGAGNVIGVSIVTVPGSCHGA---------EVEDVDLEAFNTTVLLQQPVPAAV------PETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDAGG 241
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI0018E85024 (ER membrane protein complex subunit 10 isoform X1 n=4 Tax=Durocryptodira TaxID=1579337 RepID=UPI0018E85024) HSP 1 Score: 61.6 bits (148), Expect = 1.020e-7 Identity = 57/216 (26.39%), Postives = 95/216 (43.98%), Query Frame = 1
Query: 49 QASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV------ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
+A +L +EH+F P R L P + S S + ++ +++ ++ A +GLY VR+ +E+ +V + V AC L + +++T+H + G ++GV + G +C P E +V + Q VP V P +A E++ + A+ A N +S KYW +P VL M S APD GG
Sbjct: 51 EACVLTLQLEHSFEPDDSIHFRKRGTLLWSPVPEPSLSLSQKQLCEEERTKLRDVAALNGLYRVRIPRRPLGTVEEAGAGYVTSFVRACSLVDSHLSDQLTVHTDGAGNVIGVSIVTVPG------SC---PGAEVEDVDLEAFNTTVLLQQPVPAAV------PETAAFIERLELEQAQRAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDAGG 251
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI001E1DD8C3 (ER membrane protein complex subunit 10 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD8C3) HSP 1 Score: 58.5 bits (140), Expect = 9.810e-7 Identity = 51/181 (28.18%), Postives = 82/181 (45.30%), Query Frame = 1
Query: 154 AFSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQ------HVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
+ S S + + +D S++ ++ A +GLY +RV + + HV + V AC L + +++TLHV+ G +VGV + G C V + + +V LQ +P P +A E++ + A+ A N +S KYW +P VL M S APD GG
Sbjct: 59 SLSLSQRQLSEEDRSRLRDVAAVNGLYRLRVPRRPGATEGLEAGGHVSSFVPACSLVESHLSDQLTLHVDIAGNVVGVSVVTQPG------GCRGHEVEDVDLELFNT---------TVQLQPPTTAPGPETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPFVLFLMMSGAPDAGG 224
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI001128ED8F (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001128ED8F) HSP 1 Score: 57.4 bits (137), Expect = 2.760e-6 Identity = 56/208 (26.92%), Postives = 99/208 (47.60%), Query Frame = 1
Query: 73 VEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQG 660
+EH+F + +T RG L L P A + + S + T ++ +++ ++ + +G+Y +R+ TD S ++V + V AC + + ++IT+H + G I+GV + G +C+ V + E+ V V+ A +VP +A E++ + A+ A N +S KYW +P VL M S APD G
Sbjct: 48 LEHSFELDDSIHYTKRGSL-LWSTPLEA-SITLSQKQLTEEERNKLRDIASLNGIYRLRIPRKLGTDGDSAEYVTSFVPACSMVESHLSDQITVHTDIAGNIIGVSIVTVPG------SCSGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDAG 237
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI000854FDC3 (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854FDC3) HSP 1 Score: 57.0 bits (136), Expect = 4.410e-6 Identity = 50/210 (23.81%), Postives = 95/210 (45.24%), Query Frame = 1
Query: 64 SLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFSAPDQGG 663
++ +EH+F + + RG L ++PS ++ S + T + +++ ++ +GLY VR+ E S+ +V + V AC + + +++T+H + G IVG+ + L + N ++ ++ + T V + Q +P V P +A E++ + A A N +S KYW +P VL M S G
Sbjct: 67 NIDLEHSFELDDSIHFKKRG--SLILNPSPDQSVSILQKQLTEDERNRLRDIANLNGLYRVRIPHKLGLSEESSHYVTSFVRACSMVESHLSDQLTVHTDISGNIVGIS----IVTLPGSCNGVEVEDVDLEQFNTTVYI-----QQPIPAAV------PETAAFIERLEMEQAHKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGASDAG 259 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig1050.786.1 >prot_Ecto-sp8_S_contig1050.786.1 ID=prot_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=233bp MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAback to top mRNA from alignment at Ecto-sp8_S_contig1050:1591..5948+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig1050.786.1 ID=mRNA_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4358bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1050:1591..5948+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1050:1591..5948+ >mRNA_Ecto-sp8_S_contig1050.786.1 ID=mRNA_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1050:1591..5948+ (Ectocarpus species8 EcLAC_412)back to top |