mRNA_Ecto-sp8_S_contig1050.786.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1050.786.1
Unique NamemRNA_Ecto-sp8_S_contig1050.786.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 1.280e-149
Identity = 219/232 (94.40%), Postives = 223/232 (96.12%), Query Frame = 1
Query:    1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLYMFSAPDQGGAXXXXXXXGGR 696
            MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATL+DASQMEEL+ANDGLYL+RVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKS VGPLASTRNCTKMPV EYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLL+MFSAPDQGGA       GGR
Sbjct:    1 MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLRDASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSAPDQGGAATPPAAGGGR 232          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S4D4Q0_HETAK (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q0_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 1.680e-19
Identity = 65/185 (35.14%), Postives = 104/185 (56.22%), Query Frame = 1
Query:   67 LSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQ---DASQMEELVANDGLYLVRVATDESS--NQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKE---QIGTKDAKAA-GNQSLL 594
            L VEH+F   ++++ R   E+ I P   +     LQ +      + +Q+++L+AN G Y +R+ ++ ++  +  V+AA+SAC L  A+FREEI LH++    I+G+ Y +P   LA  R+C   P+ E  +  TK+ V  A+  QSVPLQ     PPPGL+ L++     G +D K    +QS L
Sbjct:   52 LQVEHSFTEDSKFSPREDWEMAISPVSRQLTVDKLQGSAQSSGMERNQIKDLIANGGFYRIRLHSNPTNPDSPMVMAAISACDLHKANFREEIVLHLDPHQNIIGMTYSAPSSVLA--RDCHSKPLPEDIKFDTKIKVAEASIGQSVPLQAQAARPPPGLAGLQKFRAAAGGEDGKGGPASQSFL 234          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S2S2Z1_9STRA (ER membrane protein complex subunit 10 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2Z1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.360e-15
Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   67 LSVEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNC--TKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQS--------LLVKYWYIFLPCVLLYMFSA--PDQG 660
            L+VEH+FGP   W  RG + L ++  + K    FS +       D    + L+ N+G Y VR+ + +  +  + A++ AC L    FRE +  H++++  ++G D+     P+  TR C  +K   L+  ++V+K         Q VP   +    P G SA      T +  A G+           L KYWY+FLP VL+ +     P++G
Sbjct:   33 LAVEHSFGPGV-WKERGTIGLTVNTEKKKVALRFSTTSLNFEKDDREAFDALLKNNGFYRVRIRS-QFGDSWLTASIPACVLAAGHFRENLRFHIDKNAALIGFDHI----PVVKTRGCDASKYLGLDSIKLVSKGSASLPQEGQHVPKNAIPVGIPQG-SAGANVAQTMEKSAGGDSGEKQEEEPHFLRKYWYVFLPLVLISVLGPGPPEEG 238          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A7S3PTA5_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PTA5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.600e-11
Identity = 62/228 (27.19%), Postives = 106/228 (46.49%), Query Frame = 1
Query:   73 VEHAFGPAAEWTHRGFLELDIDPSRAKA---FSASLQPATLQDASQMEELVANDGLYLVRVAT--DESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVT--KVVVVRAASAQSVPLQV----------------LQNSPPPGLSALKE-QIGTKDAKAAG----NQSLLVKYWYIFLPCVLLYMF--SAPDQGGA 666
            ++H+F    ++  RG L + +     K    FS+     +  +   M++LV N+ LY VR+    D+ S+  +VA++ ACQ+    F+E    H+++ G I   +  S            K P  E S+ ++  K VV+++ +  S+P +                 + N PP     ++E +  +KD K A     NQS + KYWY+FLP +L+ +F  S   Q GA
Sbjct:   57 IQHSFSYDGQFVDRGKLLVQVMKKSKKISIKFSSKTYEFSSDEMKGMKKLVENNRLYRVRIPLKPDDPSSPWLVASIPACQMLENDFKESFRFHLDKSGTITSFELSS------------KTPSRECSQGLSFPKSVVLKSKAVASIPKEAHGAPKRGGLNDSKGAKVANMPPELQGVIEENKPKSKDGKEAEEEAENQSFVRKYWYLFLPMLLMSVFGGSPEPQAGA 272          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A6P8SKT0_GEOSA (ER membrane protein complex subunit 10 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SKT0_GEOSA)

HSP 1 Score: 64.3 bits (155), Expect = 9.850e-9
Identity = 58/213 (27.23%), Postives = 100/213 (46.95%), Query Frame = 1
Query:   58 ARSLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQG 660
            A  + +EH+F    +  +T RG   L  +P+   + + S +  T ++  ++ ++ + +G+Y +R+      DE S QHV + V AC +  +   ++IT+H +  G I+GV   +  G      +CT   V +   E+    V V+   A +VP            +A  E++  + A+ A N    +S   KYW   +P VL  M S APD G
Sbjct:   40 ALEVQLEHSFELDSSIRFTKRG--SLLWNPASEGSVTISQKQLTEEERIKLRDIASLNGVYRIRIPRKPGLDEGSVQHVTSFVPACSMVESHLSDQITIHTDLAGNIIGVSIVTVPG------SCTGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDTG 234          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: A0A8C8S1I8_9SAUR (ER membrane protein complex subunit 10 n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8S1I8_9SAUR)

HSP 1 Score: 62.4 bits (150), Expect = 4.930e-8
Identity = 56/213 (26.29%), Postives = 96/213 (45.07%), Query Frame = 1
Query:   64 SLSVEHAFGP--AAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRVAT------DESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
            SL +EH+F P  +  +  RG L   + P    + S + +  + ++ S++ ++ A +GLY VR+        +E+  ++V + V AC L  +   +++T+H +  G ++GV   +  G              E  +V  +         Q VP  V      P  +A  E++  + A+ A N    +S   KYW   +P VL  M S APD GG
Sbjct:   46 SLQLEHSFEPDDSIHFRKRGTLLWSLAPE--SSLSLTQKQLSEEEHSKLRDVAALNGLYRVRIPRQPLGIGEEAGAEYVSSFVRACSLVDSHLSDQLTVHTDGAGNVIGVSIVTVPGSCHGA---------EVEDVDLEAFNTTVLLQQPVPAAV------PETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDAGG 241          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI0018E85024 (ER membrane protein complex subunit 10 isoform X1 n=4 Tax=Durocryptodira TaxID=1579337 RepID=UPI0018E85024)

HSP 1 Score: 61.6 bits (148), Expect = 1.020e-7
Identity = 57/216 (26.39%), Postives = 95/216 (43.98%), Query Frame = 1
Query:   49 QASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV------ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
            +A   +L +EH+F P      R    L   P    + S S +    ++ +++ ++ A +GLY VR+        +E+   +V + V AC L  +   +++T+H +  G ++GV   +  G      +C   P  E  +V  +         Q VP  V      P  +A  E++  + A+ A N    +S   KYW   +P VL  M S APD GG
Sbjct:   51 EACVLTLQLEHSFEPDDSIHFRKRGTLLWSPVPEPSLSLSQKQLCEEERTKLRDVAALNGLYRVRIPRRPLGTVEEAGAGYVTSFVRACSLVDSHLSDQLTVHTDGAGNVIGVSIVTVPG------SC---PGAEVEDVDLEAFNTTVLLQQPVPAAV------PETAAFIERLELEQAQRAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDAGG 251          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI001E1DD8C3 (ER membrane protein complex subunit 10 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD8C3)

HSP 1 Score: 58.5 bits (140), Expect = 9.810e-7
Identity = 51/181 (28.18%), Postives = 82/181 (45.30%), Query Frame = 1
Query:  154 AFSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQ------HVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQGG 663
            + S S +  + +D S++ ++ A +GLY +RV     + +      HV + V AC L  +   +++TLHV+  G +VGV   +  G       C    V +    +            +V LQ    +P P  +A  E++  + A+ A N    +S   KYW   +P VL  M S APD GG
Sbjct:   59 SLSLSQRQLSEEDRSRLRDVAAVNGLYRLRVPRRPGATEGLEAGGHVSSFVPACSLVESHLSDQLTLHVDIAGNVVGVSVVTQPG------GCRGHEVEDVDLELFNT---------TVQLQPPTTAPGPETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPFVLFLMMSGAPDAGG 224          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI001128ED8F (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001128ED8F)

HSP 1 Score: 57.4 bits (137), Expect = 2.760e-6
Identity = 56/208 (26.92%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   73 VEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYS-EVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFS-APDQG 660
            +EH+F    +  +T RG L L   P  A + + S +  T ++ +++ ++ + +G+Y +R+     TD  S ++V + V AC +  +   ++IT+H +  G I+GV   +  G      +C+   V +   E+    V V+   A +VP            +A  E++  + A+ A N    +S   KYW   +P VL  M S APD G
Sbjct:   48 LEHSFELDDSIHYTKRGSL-LWSTPLEA-SITLSQKQLTEEERNKLRDIASLNGIYRLRIPRKLGTDGDSAEYVTSFVPACSMVESHLSDQITVHTDIAGNIIGVSIVTVPG------SCSGAEVEDVDLELFNTTVQVQQPVAAAVP----------ETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSGAPDAG 237          
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Match: UPI000854FDC3 (ER membrane protein complex subunit 10 isoform X1 n=2 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854FDC3)

HSP 1 Score: 57.0 bits (136), Expect = 4.410e-6
Identity = 50/210 (23.81%), Postives = 95/210 (45.24%), Query Frame = 1
Query:   64 SLSVEHAF--GPAAEWTHRGFLELDIDPSRAKAFSASLQPATLQDASQMEELVANDGLYLVRV----ATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGN----QSLLVKYWYIFLPCVLLYMFSAPDQGG 663
            ++ +EH+F    +  +  RG   L ++PS  ++ S   +  T  + +++ ++   +GLY VR+       E S+ +V + V AC +  +   +++T+H +  G IVG+     +  L  + N  ++  ++  +  T V +      Q +P  V      P  +A  E++  + A  A N    +S   KYW   +P VL  M S     G
Sbjct:   67 NIDLEHSFELDDSIHFKKRG--SLILNPSPDQSVSILQKQLTEDERNRLRDIANLNGLYRVRIPHKLGLSEESSHYVTSFVRACSMVESHLSDQLTVHTDISGNIVGIS----IVTLPGSCNGVEVEDVDLEQFNTTVYI-----QQPIPAAV------PETAAFIERLEMEQAHKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGASDAG 259          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1050.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G914_ECTSI1.280e-14994.40ER membrane protein complex subunit 10 n=1 Tax=Ect... [more]
A0A7S4D4Q0_HETAK1.680e-1935.14ER membrane protein complex subunit 10 (Fragment) ... [more]
A0A7S2S2Z1_9STRA2.360e-1528.64ER membrane protein complex subunit 10 n=1 Tax=lab... [more]
A0A7S3PTA5_9STRA3.600e-1127.19ER membrane protein complex subunit 10 n=1 Tax=Apl... [more]
A0A6P8SKT0_GEOSA9.850e-927.23ER membrane protein complex subunit 10 n=2 Tax=Geo... [more]
A0A8C8S1I8_9SAUR4.930e-826.29ER membrane protein complex subunit 10 n=1 Tax=Pel... [more]
UPI0018E850241.020e-726.39ER membrane protein complex subunit 10 isoform X1 ... [more]
UPI001E1DD8C39.810e-728.18ER membrane protein complex subunit 10 n=1 Tax=Ech... [more]
UPI001128ED8F2.760e-626.92ER membrane protein complex subunit 10 isoform X1 ... [more]
UPI000854FDC34.410e-623.81ER membrane protein complex subunit 10 isoform X1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1050contigEcto-sp8_S_contig1050:1591..5948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.6
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog112098.XP_008618017.1
Preferred nameEMC10
Model size699
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0072546,GO:0098796,GO:0098827
Exons8
EggNOG OGsKOG4827@1,KOG4827@2759
Cds size699
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1050.786.1prot_Ecto-sp8_S_contig1050.786.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1050 1591..5948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143148.3103743-CDS-Ecto-sp8_S_contig1050:1590..16921681143148.3103743-CDS-Ecto-sp8_S_contig1050:1590..1692Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 1591..1692 +
1681143148.3216815-CDS-Ecto-sp8_S_contig1050:2943..30481681143148.3216815-CDS-Ecto-sp8_S_contig1050:2943..3048Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 2944..3048 +
1681143148.3316092-CDS-Ecto-sp8_S_contig1050:3773..38601681143148.3316092-CDS-Ecto-sp8_S_contig1050:3773..3860Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 3774..3860 +
1681143148.3409705-CDS-Ecto-sp8_S_contig1050:4123..41941681143148.3409705-CDS-Ecto-sp8_S_contig1050:4123..4194Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 4124..4194 +
1681143148.3509197-CDS-Ecto-sp8_S_contig1050:4612..46731681143148.3509197-CDS-Ecto-sp8_S_contig1050:4612..4673Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 4613..4673 +
1681143148.3698592-CDS-Ecto-sp8_S_contig1050:5089..51511681143148.3698592-CDS-Ecto-sp8_S_contig1050:5089..5151Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 5090..5151 +
1681143148.3806953-CDS-Ecto-sp8_S_contig1050:5451..55661681143148.3806953-CDS-Ecto-sp8_S_contig1050:5451..5566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 5452..5566 +
1681143148.3927636-CDS-Ecto-sp8_S_contig1050:5852..59481681143148.3927636-CDS-Ecto-sp8_S_contig1050:5852..5948Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1050 5853..5948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1050.786.1

>prot_Ecto-sp8_S_contig1050.786.1 ID=prot_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=233bp
MKSLKTATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRA
KAFSASLQPATLQDASQMEELVANDGLYLVRVATDESSNQHVVAAVSACQ
LRLASFREEITLHVERDGVIVGVDYKSPVGPLASTRNCTKMPVLEYSEVV
TKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVK
YWYIFLPCVLLYMFSAPDQGGAAAPPAAGGGR*
back to top

mRNA from alignment at Ecto-sp8_S_contig1050:1591..5948+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1050.786.1 ID=mRNA_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4358bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1050:1591..5948+ (Ectocarpus species8 EcLAC_412)
ATGAAGTCACTGAAAACGGCCACCAGTGTTGCGTTTGCCTGGTGTGTACA AGCCAGTGCGCGAAGCCTTAGCGTGGAGCATGCGTTCGGACCGGCGGCCG AGGTAGGTTGGGTTCTATCGTACAGTACCCCGTTTGGCCAGGATTTGTTC ACTCCTTCTGGACTGCTGTGTAAAACCATCAAAGGAGGAACATTGGCGAG CAGCAGTAACCCAGTAAAGCACAACTATTGTAGTGGATATTGGTTTGGAC GCGGAAAAAATCGTCCAAAACTACCATTTGGCCGAGCTATTGCTGTACAC CCACAGCAGTTCAGGAGACTGCTGTGTGACGACGCCCACAGCAGTGGAAG ATGAACGGTTCGGACCCAGGTTTGCGGAGTTTTCGGACCGCAGCTGTAAC CTTCGACACCACGGCTGCAGCATCAGATCTGGACGTGCCAACGCGCATGT CGCTGCTCCATCGTGCCCTCTCTACGGATTTTTCATCAAACAGTAACACT TTTTAATCGCAAAGAACCTCGTGTGGCAACCCGCCGTGGTATCTGTCTTC ATCAGCGTTTTGAGAAATTTGAGCTTGGTTGAGAACGTGTTTTATGTGGA GGAGACTGCCTGGTATGGAGAGACAGATCGCCGCTGCTCTGTGCTGCAAG TAAGAGGTTTTTTCCTGCGCAACGCTTCCCATCTGGTCTCATGCGTCTCT TTTCTGATCGCTGGGTGCTAGTAGTTCGGTCGTTTCGAAACCACCCAAAA ACCAAGATTAGTATGAGTAAACATCCAGTAGCTCCTCTCCCTCAACAAAT TTAAATAGTTTTAATATGTCACTCTTGAAGGCATAGAAATGAATTTCCGT TTATCTCAAGCTTCCCAAAAATAAGAAGGTGCTACATAGAAAGACGCGGA GTCTCCACTTCTCCCGAAGAAATCTTCAAGCAAAGAAGCGCCCCCATTTA TAGTGTAAATCCAGAAAAAAATACGGGCTCCAGGTATGCGGTTCCGGTCG ACTGCTGTAGCACGGGTGTATCTGTCTAAGACCATAACACAAACGAGAGG CCCATGGTGTTGGTGTTGTGGGCATGGTTACGTAACAGCTGCGGTATGCT CGGTTCCATTGTCATTCAGGCACCGTCGCTCGCAGTTGCCTACTGCTGTA CGGTCTGCACTCTCTCACAAAAACCCTCAATGCGGGGTCGCACAGAAGAA TGCCCCTATGGTACCAGTGTTCGGTTGGGTTTCTGTTTGTTCTGTAGCTA TCGGTGTACTGATCAGGCGAAGCCGTTCGCGAATGGCGAATTAATACATT ATTTTCTCCGCATCTTGCTTTTTCAACCCCATTCCGAAATTTGCACTCAC AAGTGGACGCACCGAGGGTTCTTGGAACTTGACATCGATCCCTCGAGAGC CAAGGCATTTTCTGCTTCACTCCAGCCGGCCACGCTGCAGGATGCATCTC AAATGGAGGTAAGACCACCGAAAAGCTTCGTTTTGGTTCATGTTCTCTAC AACGGTACTTCACCTCCTGTTTTTCAATAGGACATATGTCGCCTGCCTCC GAAAGTTGCTGCCAGCGCACCCACTGCACCTCTCCTACATGTTCGCCAAC TCTTTTTTGCATGATTGGTATGCTGTTTGTACGTGGTCCTAAGCTCTACA CACATGCAGCCCTACACATATTTTCAGCAGTTTGTGAACACAAACGACCG TACGAGTTGAATCGAGCTTTGGGATGGATGTTTATAAGAAGTAGACGTTT ACGGGGATGAGTCAATCTCGTCCCCGGGGTTTCCATGTCATCGTCATTTC TCCCCTATCCCGATTTTGCATTAGTGGGGCAGTGCTAAGGGCGGTGCAAA TTAGCCGCACCCTCTCAGTCGTGTCATTGAAGCGATATTCCAGCAAGATT ACAAGGCGAAGCAGATATTGCAGGGACTAAAGGCGGACTTGCGCGCGCAT GAGAGCTGAGTGTGAGAGCAAGAACGTGCCCGTTGCACCGCAACTTCGCC GATACAATCTGATTTGCAAGAGCTGAGAGGATAGTGTCTGGATCCCGAAC CATACAAAAGCATAGAACGACACCGAAAAGATAAGTATTCCTGCGCTATC CAGAACTCTGGATGAAATAAAAGAGGATTATATTATGCATACATGGTGTA GAAGTTACGTCTGCCACCGTCGCATTTACGCAGGAACTGGTCGCGAATGA TGGACTTTACCTCGTCAGAGTGGCCACTGATGAATCATCTAATCAGCACG TGGTGGCAGCGGTATCCGCGGTGAGTATGGCAGCGAGCACGTGCAGAGTG AGTAGCTGCCACTAGGCTAAGATGCGTGTGGTGCATGAGAGTCCCTGGTG TGGGGGCGCACGAACAACCGTTGTTGGACACGTTGTTCGGCTTGAACGGA TACGTCGATTTTACGTAGCTGCTTGAGATCCCTGCTTGTCCAGCATGCCA TTCATCTGCTGCCGTCCCAGTTCCTGAAAATGACCTGCAACGCTGCTTCA TTTCTCTTCCGGTCGACCGTCTTCTGCCACCAGTGCCAACTTCGCCTGGC GTCCTTCAGAGAGGAAATTACACTGCACGTCGAGCGGGATGGAGTAATAG TGGGGTAAGATTGGTTCGTTGATGTGTACACGGATAGATAAGCTCAGTCT GCCACACGCATTCAAGAAGCGTAGACCAGCGATCAATCAATTTCCAATGC TGTGTGCTTCATGTCAGATGTCAGGAAGCTCTCGCCTTTGCTGTTTGCAC GCTGGTTGGGGTTGAGTGATGCCACGTGTAGTAGGTGCTGGTCTTGCTTC AAGTAGTTGATTTCCTTGATTAGCAAGGGCTGCTTGTTGTTTCGCTGTCA CGGTATTCTGGTCCTGTTTTGATCTTACAATCCTCGCACCAATCGCCTTG TTGCGGTTGTTCATTCTCGTTCTTGCATCGGTAAAAGCTAGTTCGCTTCA CTGCAACAGTGCCATCTTGAATAATTCGATATCAGCACGGTTTTCTCCCC TCACGTATTTTGTACACACCAGGGTTGACTACAAATCTCCGGTTGGGCCT CTCGCTAGCACCCGGAACTGCACGAAAATGCCGGTGAGAACGTGCCTACA AGATTGTGCTGTCCTCGATAGAATTAACCCTCTATTTTAGCCTACCTCCC GTGTTCCCCTCGACTTATGCCCCCCTGCTGCAAACAACGCCATGAAAAAC GTTAGTCCCGTAGAAAGACTCCCGTGTAACTAGCTCTGAGACCCCCAGAG ATATCACCCGGGGTCATCTCTCGAATGGAGGCAAGGAGTAATACAAGCAT ATGCTACGGCAAAAGTAGCCCATGCCCCATACAGCAGCTAAATATATGTT CCTGGTAGGGCCGTTTTGGTTGGGATATTGTGGTTACGCACGACCAAACC GTACGGCGCGTGCTGTTTGTCCCCCGTGGAACATTCAACCTTCATTCAGC ACGTGACTCACACGGTACACCACGCCCCCATGCATTGGTGAATCGCAAGG TGCTGGAGTATTCGGAAGTTGTGACCAAGGTCGTGGTTGTCAGAGCCGCT AGTGCTCAAAGGTGAGTGTTTTCGGTAAAAGCCCAAAAGAGCTAGCTTCA CAAAGCCTGGCTAAATTCTAATTTCGTCACGTACATTTGGGGGCACGTGC ACCGGACTGTTCGCAAAAGGTCAAAACCCACGACGGAAATGTTGTTTTGT GGTCTCAGCTACAGCATGGCCCTCCGCACTGAACCTGTAGGATTTTTGCA CTAGGATTTTTGCACTGTAGCAATGGTAGATCTTTGCCGCCAGCTGCAAG CATATGCCGGTTCTACTTTTACCAACGCACAAACGTCCTCGCGTGCGTTC CACCCTGCAAGTGTCCCTCTGCAAGTGCTGCAGAATAGCCCTCCTCCTGG ACTGTCGGCATTGAAAGAACAGATTGGGACGAAAGATGCGAAGGCTGCCG GTAACCAGAGTCTCCTGGTAAAATACGTAAGTGCATACATTGGGTACCTC AATCGAAGAAAACTACTTGTTGAGGCATCCGTACGAACTTGCTTGCTGTA GGCGAAGCCTTCCAACTGACATGTGAACTCCTTTCCGTCTCCCCACCGCT TGGGTTGGGTATTATGCGTGTAACTATTCCGTGGAACCTGCGAAACCTTG CGCTGAGAGGTACATCGGGTGAAATGAAAGGTTTCCTTGGACACTGCTGT AGGCCGTGCTTTCAATTAATCATTGCTGGATGTCCGCTTCTGTTTCCCTT GCTCCCTTGCAGTGGTACATTTTTTTGCCTTGCGTACTACTCTACATGTT CAGCGCGCCGGATCAAGGGGGGGCAGCTGCGCCGCCGGCTGCGGGCGGAG GCAGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1050:1591..5948+

>mRNA_Ecto-sp8_S_contig1050.786.1 ID=mRNA_Ecto-sp8_S_contig1050.786.1|Name=mRNA_Ecto-sp8_S_contig1050.786.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1050:1591..5948+ (Ectocarpus species8 EcLAC_412)
ATGAAGTCACTGAAAACGGCCACCAGTGTTGCGTTTGCCTGGTGTGTACA
AGCCAGTGCGCGAAGCCTTAGCGTGGAGCATGCGTTCGGACCGGCGGCCG
AGTGGACGCACCGAGGGTTCTTGGAACTTGACATCGATCCCTCGAGAGCC
AAGGCATTTTCTGCTTCACTCCAGCCGGCCACGCTGCAGGATGCATCTCA
AATGGAGGAACTGGTCGCGAATGATGGACTTTACCTCGTCAGAGTGGCCA
CTGATGAATCATCTAATCAGCACGTGGTGGCAGCGGTATCCGCGTGCCAA
CTTCGCCTGGCGTCCTTCAGAGAGGAAATTACACTGCACGTCGAGCGGGA
TGGAGTAATAGTGGGGGTTGACTACAAATCTCCGGTTGGGCCTCTCGCTA
GCACCCGGAACTGCACGAAAATGCCGGTGCTGGAGTATTCGGAAGTTGTG
ACCAAGGTCGTGGTTGTCAGAGCCGCTAGTGCTCAAAGTGTCCCTCTGCA
AGTGCTGCAGAATAGCCCTCCTCCTGGACTGTCGGCATTGAAAGAACAGA
TTGGGACGAAAGATGCGAAGGCTGCCGGTAACCAGAGTCTCCTGGTAAAA
TACTGGTACATTTTTTTGCCTTGCGTACTACTCTACATGTTCAGCGCGCC
GGATCAAGGGGGGGCAGCTGCGCCGCCGGCTGCGGGCGGAGGCAGATAG
back to top