mRNA_Ecto-sp8_S_contig101881.308.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101881.308.1
Unique NamemRNA_Ecto-sp8_S_contig101881.308.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A9DD57_HOEPD (RTX toxin n=2 Tax=Hoeflea TaxID=274591 RepID=A9DD57_HOEPD)

HSP 1 Score: 199 bits (507), Expect = 5.450e-56
Identity = 104/146 (71.23%), Postives = 126/146 (86.30%), Query Frame = 1
Query:    1 TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSG-DTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
            TS  TFT+DV N++DE PTDITFTGGTVNETV  GG+IDS+Y+PSG+TVA LS TDAD G D+F++AITNDPSGHFEIVG+EVR++SGQ ID+ETA +HD+TI+VTDA G TY ETITINV D+EG+YT + AG+ ITGT EEDV+
Sbjct: 2032 TSNQTFTIDVTNVVDEAPTDITFTGGTVNETVASGGSIDSSYNPSGATVAVLSTTDADGGIDSFTYAITNDPSGHFEIVGNEVRVRSGQNIDYETATSHDVTIQVTDANGATYLETITINVADYEGSYTTSDAGQNITGTSEEDVL 2177          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A317PJI6_9HYPH (Ca2+-binding RTX toxin-like protein (Fragment) n=1 Tax=Hoeflea marina TaxID=274592 RepID=A0A317PJI6_9HYPH)

HSP 1 Score: 169 bits (429), Expect = 1.520e-45
Identity = 91/146 (62.33%), Postives = 115/146 (78.77%), Query Frame = 1
Query:    1 TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDT-FSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
            TS  TFT+ V N+ D  PTDITFTGGT+ ETV+ GG+ID AYDPSGSTVA LS TDAD  D  F + IT+DPSGHFEIV +E+R++SGQ+IDFE+    D+T+EVTDAGG ++SETI + V+D+ G++TA + GET TGT EEDV+
Sbjct:   22 TSTQTFTLAVQNISDMAPTDITFTGGTLRETVVSGGSIDGAYDPSGSTVAVLSTTDADGPDDGFVYVITSDPSGHFEIVDNEIRVESGQSIDFESQTGFDVTVEVTDAGGFSHSETIRLTVEDYNGSFTAGNGGETATGTSEEDVL 167          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A640W0B8_9RHOB (Cadherin domain-containing protein n=2 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640W0B8_9RHOB)

HSP 1 Score: 142 bits (358), Expect = 5.790e-36
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1
Query:   52 PTDITF-TGGTVNETVLDGGTIDSAYDPSGSTVATLSATDAD-SGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
            PT ++F +GG+VNETV DGGTI +AYDPSGSTV  L  TDA  +GD  S+++  DPSG+FEIVG+E+R++SGQTIDFET  +  +T+  TD  GNT+ + +TINV DFEG+YT   A E + GT EEDVI
Sbjct: 1122 PTAVSFASGGSVNETVADGGTIATAYDPSGSTVGVLQTTDASGAGDAHSYSLVADPSGNFEIVGNEIRVRSGQTIDFETDTSFTVTVRTTDISGNTHDQVLTINVNDFEGSYTVAGAAENVVGTSEEDVI 1251          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: UPI001653326D (cadherin domain-containing protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001653326D)

HSP 1 Score: 122 bits (306), Expect = 5.290e-29
Identity = 78/150 (52.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query:   34 NLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDF-------EGAYTATSAG---ETITGTREEDVIDAHADG 453
            N+++  PTDIT +  TV E        +SA    G+ VATLS TDA++GDTF++AITNDPSG FEIVGDE+R+ SG  IDFETA +HD+T++VTDAGG TYSET T+ V D        +G  T T  G    +I+G    D I AHADG
Sbjct:  698 NVLNTAPTDITSSASTVAE--------NSAV---GTVVATLSTTDANAGDTFTYAITNDPSGFFEIVGDEIRVASGADIDFETATSHDVTVQVTDAGGATYSETFTLTVSDTAENLQLGDGGVTFTDVGVAETSISGGTGNDSITAHADG 836          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A0M7B2T0_9HYPH (Hemolysin IA n=2 Tax=Roseibium album TaxID=311410 RepID=A0A0M7B2T0_9HYPH)

HSP 1 Score: 114 bits (285), Expect = 3.720e-26
Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGA 378
            TF++DV N++DE PTDI   GG ++E              +G+ VATLS TD D+GD+ +++ITNDPSG+FEIVGDE+R+  G  +D E A+TH IT++VTDA G TYSE +TI V D   A
Sbjct:  491 TFSIDVTNIIDETPTDIETAGGAIDEN-----------SSAGAVVATLSTTDKDAGDSHTYSITNDPSGYFEIVGDEIRVSDGAKLDHERADTHTITVQVTDAAGLTYSEDVTITVNDVNEA 601          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A3P1SR83_9GAMM (Uncharacterized protein (Fragment) n=2 Tax=Amphritea balenae TaxID=452629 RepID=A0A3P1SR83_9GAMM)

HSP 1 Score: 110 bits (274), Expect = 1.090e-24
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 1
Query:   16 FTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETIT-GTREEDVID 438
            F + VNNL +EGPTDIT +GG+V+E              +G  VATLSA+D DSG+TFS+++T+D  G FE+VG+E+R+K G  ++FETAE HD+T+ VTD+ GNTY E   + V D     TA +   T+  G  +E V D
Sbjct: 1079 FDLSVNNL-NEGPTDITLSGGSVDENST-----------AGVVVATLSASDQDSGETFSYSLTDDAGGRFEVVGNEIRVKEGADLNFETAEDHDVTVRVTDSDGNTYDENFNLQVNDLFEDLTAETPNLTVNLGADQETVYD 1208          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A6N6SZ44_9HYPH (Uncharacterized protein (Fragment) n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SZ44_9HYPH)

HSP 1 Score: 108 bits (271), Expect = 1.270e-24
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   46 EGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITG 414
            E PTDIT TGGTV E              +G+ VATL A D D+G++F++A+ +DPSG FE+VG+EVR+K+G T+D+E+A  HDIT+ VTDAGG ++SET+T+ V +  G+   T+  + + G
Sbjct:  281 EAPTDITVTGGTVEENAA-----------AGTVVATLGAVDPDAGESFTYALASDPSGKFEVVGNEVRVKAGATLDYESATAHDITVTVTDAGGLSHSETLTVAVTNQSGSIVGTAGNDVLNG 392          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A426W415_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) TaxID=2496632 RepID=A0A426W415_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 5.190e-21
Identity = 57/141 (40.43%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
            T T+DV ++ +E P DI F+G +++E              +G+ VA LSATD D G+ FS+A+T+DPSG+FEIVG+++R+K G  ID+E +  H++T++VTD+ GN+++E +TI+V+D +       AG  + GT   D +
Sbjct:  328 TVTIDVTDV-NEAPVDIIFSGDSLDENA-----------EAGTVVANLSATDEDGGEVFSYALTDDPSGNFEIVGNQIRVKEGADIDYEDSSEHNLTVQVTDSDGNSFAEMVTIDVRDVDER----PAGMVLLGTNNADQL 452          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A8G1E8N7_9GAMM (Uncharacterized protein n=6 Tax=Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) TaxID=2496632 RepID=A0A8G1E8N7_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 6.280e-21
Identity = 57/141 (40.43%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
            T T+DV ++ +E P DI F+G +++E              +G+ VA LSATD D G+ FS+A+T+DPSG+FEIVG+++R+K G  ID+E +  H++T++VTD+ GN+++E +TI+V+D +       AG  + GT   D +
Sbjct: 1206 TVTIDVTDV-NEAPVDIIFSGDSLDENA-----------EAGTVVANLSATDEDGGEVFSYALTDDPSGNFEIVGNQIRVKEGADIDYEDSSEHNLTVQVTDSDGNSFAEMVTIDVRDVDER----PAGMVLLGTNNADQL 1330          
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A3P1SNF9_9GAMM (Tandem-95 repeat protein n=1 Tax=Amphritea balenae TaxID=452629 RepID=A0A3P1SNF9_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 8.860e-21
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  136 GSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDF-EGAYTATSAGETITGTREEDVI 435
            G+ V  LSATD D  DTF+F+I NDP+ +FEIVG+E+R+K+G T+D+E+A++HDIT+ VTDAGG TY E +T+ V+D  E    AT+ G T+      ++I
Sbjct: 1604 GAVVGYLSATDPDVVDTFTFSIINDPANNFEIVGNEIRVKAGATLDYESAQSHDITVRVTDAGGLTYDEVVTVQVEDINESPTVATNTGSTVAEGSTNNII 1704          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9DD57_HOEPD5.450e-5671.23RTX toxin n=2 Tax=Hoeflea TaxID=274591 RepID=A9DD5... [more]
A0A317PJI6_9HYPH1.520e-4562.33Ca2+-binding RTX toxin-like protein (Fragment) n=1... [more]
A0A640W0B8_9RHOB5.790e-3658.46Cadherin domain-containing protein n=2 Tax=Roseoba... [more]
UPI001653326D5.290e-2952.00cadherin domain-containing protein n=1 Tax=Roseoba... [more]
A0A0M7B2T0_9HYPH3.720e-2650.82Hemolysin IA n=2 Tax=Roseibium album TaxID=311410 ... [more]
A0A3P1SR83_9GAMM1.090e-2446.48Uncharacterized protein (Fragment) n=2 Tax=Amphrit... [more]
A0A6N6SZ44_9HYPH1.270e-2447.15Uncharacterized protein (Fragment) n=1 Tax=Hyphomi... [more]
A0A426W415_9GAMM5.190e-2140.43Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A8G1E8N7_9GAMM6.280e-2140.43Uncharacterized protein n=6 Tax=Gammaproteobacteri... [more]
A0A3P1SNF9_9GAMM8.860e-2150.50Tandem-95 repeat protein n=1 Tax=Amphritea balenae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101881contigEcto-sp8_S_contig101881:6..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score202.6
Seed ortholog evalue1.5e-49
Seed eggNOG ortholog411684.HPDFL43_02864
Model size531
KEGG koko:K20276
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.COG2931 RTX toxins and related Ca2 -binding proteins
EggNOG OGs1MU7T@1224,2TRVY@28211,43I5T@69277,COG2304@1,COG2304@2,COG2911@1,COG2911@2,COG2931@1,COG2931@2
Cds size531
COG Functional cat.Q
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143116.7942238-CDS-Ecto-sp8_S_contig101881:5..5361681143116.7942238-CDS-Ecto-sp8_S_contig101881:5..536Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101881 6..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101881.308.1prot_Ecto-sp8_S_contig101881.308.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101881 6..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101881.308.1

>prot_Ecto-sp8_S_contig101881.308.1 ID=prot_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=177bp
TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVA
TLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDI
TIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVIDAHAD
GSTIDGGWGSDTINGSASDDDITGNRG
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mRNA from alignment at Ecto-sp8_S_contig101881:6..536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101881.308.1 ID=mRNA_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101881:6..536- (Ectocarpus species8 EcLAC_412)
ACATCGGTAACAACATTTACTGTTGATGTGAACAATCTCATGGATGAAGG TCCAACAGACATCACCTTTACGGGCGGTACGGTCAATGAAACTGTTCTTG ATGGCGGCACAATTGATAGCGCCTATGACCCGTCTGGTTCAACAGTTGCA ACATTGTCTGCAACGGATGCTGATTCTGGCGACACGTTCAGTTTTGCGAT CACCAATGATCCATCGGGGCATTTTGAAATTGTTGGCGATGAAGTGCGTA TTAAATCTGGTCAAACCATCGATTTTGAAACAGCTGAAACGCACGATATT ACAATTGAAGTGACCGATGCGGGTGGCAACACATATTCCGAGACGATAAC CATCAATGTTCAGGATTTTGAAGGCGCATATACGGCAACAAGCGCTGGTG AGACGATTACAGGTACTCGCGAAGAGGATGTCATCGATGCCCATGCTGAT GGTAGTACGATAGATGGAGGTTGGGGATCCGATACGATCAACGGCAGTGC AAGTGATGACGACATCACCGGTAATCGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101881:6..536-

>mRNA_Ecto-sp8_S_contig101881.308.1 ID=mRNA_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101881:6..536- (Ectocarpus species8 EcLAC_412)
ACATCGGTAACAACATTTACTGTTGATGTGAACAATCTCATGGATGAAGG
TCCAACAGACATCACCTTTACGGGCGGTACGGTCAATGAAACTGTTCTTG
ATGGCGGCACAATTGATAGCGCCTATGACCCGTCTGGTTCAACAGTTGCA
ACATTGTCTGCAACGGATGCTGATTCTGGCGACACGTTCAGTTTTGCGAT
CACCAATGATCCATCGGGGCATTTTGAAATTGTTGGCGATGAAGTGCGTA
TTAAATCTGGTCAAACCATCGATTTTGAAACAGCTGAAACGCACGATATT
ACAATTGAAGTGACCGATGCGGGTGGCAACACATATTCCGAGACGATAAC
CATCAATGTTCAGGATTTTGAAGGCGCATATACGGCAACAAGCGCTGGTG
AGACGATTACAGGTACTCGCGAAGAGGATGTCATCGATGCCCATGCTGAT
GGTAGTACGATAGATGGAGGTTGGGGATCCGATACGATCAACGGCAGTGC
AAGTGATGACGACATCACCGGTAATCGTGGT
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