mRNA_Ecto-sp8_S_contig101881.308.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A9DD57_HOEPD (RTX toxin n=2 Tax=Hoeflea TaxID=274591 RepID=A9DD57_HOEPD) HSP 1 Score: 199 bits (507), Expect = 5.450e-56 Identity = 104/146 (71.23%), Postives = 126/146 (86.30%), Query Frame = 1
Query: 1 TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSG-DTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
TS TFT+DV N++DE PTDITFTGGTVNETV GG+IDS+Y+PSG+TVA LS TDAD G D+F++AITNDPSGHFEIVG+EVR++SGQ ID+ETA +HD+TI+VTDA G TY ETITINV D+EG+YT + AG+ ITGT EEDV+
Sbjct: 2032 TSNQTFTIDVTNVVDEAPTDITFTGGTVNETVASGGSIDSSYNPSGATVAVLSTTDADGGIDSFTYAITNDPSGHFEIVGNEVRVRSGQNIDYETATSHDVTIQVTDANGATYLETITINVADYEGSYTTSDAGQNITGTSEEDVL 2177
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A317PJI6_9HYPH (Ca2+-binding RTX toxin-like protein (Fragment) n=1 Tax=Hoeflea marina TaxID=274592 RepID=A0A317PJI6_9HYPH) HSP 1 Score: 169 bits (429), Expect = 1.520e-45 Identity = 91/146 (62.33%), Postives = 115/146 (78.77%), Query Frame = 1
Query: 1 TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDT-FSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
TS TFT+ V N+ D PTDITFTGGT+ ETV+ GG+ID AYDPSGSTVA LS TDAD D F + IT+DPSGHFEIV +E+R++SGQ+IDFE+ D+T+EVTDAGG ++SETI + V+D+ G++TA + GET TGT EEDV+
Sbjct: 22 TSTQTFTLAVQNISDMAPTDITFTGGTLRETVVSGGSIDGAYDPSGSTVAVLSTTDADGPDDGFVYVITSDPSGHFEIVDNEIRVESGQSIDFESQTGFDVTVEVTDAGGFSHSETIRLTVEDYNGSFTAGNGGETATGTSEEDVL 167
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A640W0B8_9RHOB (Cadherin domain-containing protein n=2 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640W0B8_9RHOB) HSP 1 Score: 142 bits (358), Expect = 5.790e-36 Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1
Query: 52 PTDITF-TGGTVNETVLDGGTIDSAYDPSGSTVATLSATDAD-SGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
PT ++F +GG+VNETV DGGTI +AYDPSGSTV L TDA +GD S+++ DPSG+FEIVG+E+R++SGQTIDFET + +T+ TD GNT+ + +TINV DFEG+YT A E + GT EEDVI
Sbjct: 1122 PTAVSFASGGSVNETVADGGTIATAYDPSGSTVGVLQTTDASGAGDAHSYSLVADPSGNFEIVGNEIRVRSGQTIDFETDTSFTVTVRTTDISGNTHDQVLTINVNDFEGSYTVAGAAENVVGTSEEDVI 1251
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: UPI001653326D (cadherin domain-containing protein n=1 Tax=Roseobacter litoralis TaxID=42443 RepID=UPI001653326D) HSP 1 Score: 122 bits (306), Expect = 5.290e-29 Identity = 78/150 (52.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query: 34 NLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDF-------EGAYTATSAG---ETITGTREEDVIDAHADG 453
N+++ PTDIT + TV E +SA G+ VATLS TDA++GDTF++AITNDPSG FEIVGDE+R+ SG IDFETA +HD+T++VTDAGG TYSET T+ V D +G T T G +I+G D I AHADG
Sbjct: 698 NVLNTAPTDITSSASTVAE--------NSAV---GTVVATLSTTDANAGDTFTYAITNDPSGFFEIVGDEIRVASGADIDFETATSHDVTVQVTDAGGATYSETFTLTVSDTAENLQLGDGGVTFTDVGVAETSISGGTGNDSITAHADG 836
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A0M7B2T0_9HYPH (Hemolysin IA n=2 Tax=Roseibium album TaxID=311410 RepID=A0A0M7B2T0_9HYPH) HSP 1 Score: 114 bits (285), Expect = 3.720e-26 Identity = 62/122 (50.82%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGA 378
TF++DV N++DE PTDI GG ++E +G+ VATLS TD D+GD+ +++ITNDPSG+FEIVGDE+R+ G +D E A+TH IT++VTDA G TYSE +TI V D A
Sbjct: 491 TFSIDVTNIIDETPTDIETAGGAIDEN-----------SSAGAVVATLSTTDKDAGDSHTYSITNDPSGYFEIVGDEIRVSDGAKLDHERADTHTITVQVTDAAGLTYSEDVTITVNDVNEA 601
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A3P1SR83_9GAMM (Uncharacterized protein (Fragment) n=2 Tax=Amphritea balenae TaxID=452629 RepID=A0A3P1SR83_9GAMM) HSP 1 Score: 110 bits (274), Expect = 1.090e-24 Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 16 FTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETIT-GTREEDVID 438
F + VNNL +EGPTDIT +GG+V+E +G VATLSA+D DSG+TFS+++T+D G FE+VG+E+R+K G ++FETAE HD+T+ VTD+ GNTY E + V D TA + T+ G +E V D
Sbjct: 1079 FDLSVNNL-NEGPTDITLSGGSVDENST-----------AGVVVATLSASDQDSGETFSYSLTDDAGGRFEVVGNEIRVKEGADLNFETAEDHDVTVRVTDSDGNTYDENFNLQVNDLFEDLTAETPNLTVNLGADQETVYD 1208
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A6N6SZ44_9HYPH (Uncharacterized protein (Fragment) n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SZ44_9HYPH) HSP 1 Score: 108 bits (271), Expect = 1.270e-24 Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 1
Query: 46 EGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITG 414
E PTDIT TGGTV E +G+ VATL A D D+G++F++A+ +DPSG FE+VG+EVR+K+G T+D+E+A HDIT+ VTDAGG ++SET+T+ V + G+ T+ + + G
Sbjct: 281 EAPTDITVTGGTVEENAA-----------AGTVVATLGAVDPDAGESFTYALASDPSGKFEVVGNEVRVKAGATLDYESATAHDITVTVTDAGGLSHSETLTVAVTNQSGSIVGTAGNDVLNG 392
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A426W415_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) TaxID=2496632 RepID=A0A426W415_9GAMM) HSP 1 Score: 99.4 bits (246), Expect = 5.190e-21 Identity = 57/141 (40.43%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
T T+DV ++ +E P DI F+G +++E +G+ VA LSATD D G+ FS+A+T+DPSG+FEIVG+++R+K G ID+E + H++T++VTD+ GN+++E +TI+V+D + AG + GT D +
Sbjct: 328 TVTIDVTDV-NEAPVDIIFSGDSLDENA-----------EAGTVVANLSATDEDGGEVFSYALTDDPSGNFEIVGNQIRVKEGADIDYEDSSEHNLTVQVTDSDGNSFAEMVTIDVRDVDER----PAGMVLLGTNNADQL 452
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A8G1E8N7_9GAMM (Uncharacterized protein n=6 Tax=Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) TaxID=2496632 RepID=A0A8G1E8N7_9GAMM) HSP 1 Score: 99.4 bits (246), Expect = 6.280e-21 Identity = 57/141 (40.43%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 13 TFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDFEGAYTATSAGETITGTREEDVI 435
T T+DV ++ +E P DI F+G +++E +G+ VA LSATD D G+ FS+A+T+DPSG+FEIVG+++R+K G ID+E + H++T++VTD+ GN+++E +TI+V+D + AG + GT D +
Sbjct: 1206 TVTIDVTDV-NEAPVDIIFSGDSLDENA-----------EAGTVVANLSATDEDGGEVFSYALTDDPSGNFEIVGNQIRVKEGADIDYEDSSEHNLTVQVTDSDGNSFAEMVTIDVRDVDER----PAGMVLLGTNNADQL 1330
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Match: A0A3P1SNF9_9GAMM (Tandem-95 repeat protein n=1 Tax=Amphritea balenae TaxID=452629 RepID=A0A3P1SNF9_9GAMM) HSP 1 Score: 99.0 bits (245), Expect = 8.860e-21 Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query: 136 GSTVATLSATDADSGDTFSFAITNDPSGHFEIVGDEVRIKSGQTIDFETAETHDITIEVTDAGGNTYSETITINVQDF-EGAYTATSAGETITGTREEDVI 435
G+ V LSATD D DTF+F+I NDP+ +FEIVG+E+R+K+G T+D+E+A++HDIT+ VTDAGG TY E +T+ V+D E AT+ G T+ ++I
Sbjct: 1604 GAVVGYLSATDPDVVDTFTFSIINDPANNFEIVGNEIRVKAGATLDYESAQSHDITVRVTDAGGLTYDEVVTVQVEDINESPTVATNTGSTVAEGSTNNII 1704 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101881.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig101881.308.1 >prot_Ecto-sp8_S_contig101881.308.1 ID=prot_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=177bp TSVTTFTVDVNNLMDEGPTDITFTGGTVNETVLDGGTIDSAYDPSGSTVAback to top mRNA from alignment at Ecto-sp8_S_contig101881:6..536- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig101881.308.1 ID=mRNA_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101881:6..536- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101881:6..536- >mRNA_Ecto-sp8_S_contig101881.308.1 ID=mRNA_Ecto-sp8_S_contig101881.308.1|Name=mRNA_Ecto-sp8_S_contig101881.308.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101881:6..536- (Ectocarpus species8 EcLAC_412)back to top |