Ec-28_003050.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-28_003050.1
Unique NameEc-28_003050.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length774
Homology
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BLAST of Ec-28_003050.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 1.650e-199
Identity = 729/773 (94.31%), Postives = 729/773 (94.31%), Query Frame = 0 
Query:    1 MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETVLSLVKAAAAXAATNITSTASSTAFFTTVGRRERAWSETLWSAAANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT 773
            MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TVLSLVK                                          ASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT
Sbjct:    1 MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLSLVK------------------------------------------ASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT 731
The following BLAST results are available for this feature:
BLAST of Ec-28_003050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS0_ECTSI1.650e-19994.31PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 323..355
e-value: 0.003
score: 15.6
coord: 252..286
e-value: 8.8E-6
score: 23.6
coord: 164..197
e-value: 1.9E-4
score: 19.4
coord: 584..617
e-value: 2.3E-5
score: 22.2
coord: 287..321
e-value: 1.4E-6
score: 26.0
coord: 359..389
e-value: 0.0011
score: 17.0
coord: 393..427
e-value: 2.0E-9
score: 35.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 171..207
e-value: 2.2E-7
score: 31.0
coord: 391..436
e-value: 6.4E-11
score: 42.3
coord: 284..332
e-value: 1.2E-10
score: 41.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 359..387
e-value: 0.0024
score: 18.0
coord: 253..282
e-value: 0.0037
score: 17.4
coord: 515..542
e-value: 1.2
score: 9.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 486..511
score: 5.152
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 161..195
score: 9.701
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 582..616
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 196..226
score: 9.175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 250..284
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 391..425
score: 12.737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 321..355
score: 9.394
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 547..581
score: 9.054
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 617..651
score: 9.317
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 512..546
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 10.26
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 356..390
score: 9.558
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 566..739
e-value: 2.2E-24
score: 88.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 337..451
e-value: 2.8E-28
score: 101.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 130..232
e-value: 1.1E-16
score: 62.7
coord: 241..336
e-value: 3.8E-26
score: 93.5
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 551..674
e-value: 2.6E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 281..436
coord: 495..680
coord: 166..352
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..773
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2870185..2879753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003050.1Ec-28_003050.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_28 2870185..2879753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=774bp
MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLH
GSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKA
GVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGAL
HALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTY
SAAMRACRAAGRTGEALSLLETMRRSARGERERGGDAESGEANAASLRPD
AFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGMAG
LWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKEARL
AGIEVGASAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLID
VCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKSGDGTVS
SPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPL
VEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRADLLPTTYS
FSSAVKSCERAGKADEVLALLGRMKSGGVSRTLITFNSALLACAKDGRRE
DSLRILSEMKKEGVSPDGKSFRLAMQACGRAGDPAGALVILRGMAKAGIP
PGDRSFASAMEAFALAGDVETVLSLVKAAAAAAATNITSTASSTAFFTTV
GRRERAWSETLWSAAANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKA
LRLLADSFRTAGPPGRSAESVRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long