Ec-28_003050.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-28_003050.1
Unique Name	Ec-28_003050.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	774

Homology

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BLAST of Ec-28_003050.1 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 592 bits (1526), Expect = 1.650e-199
Identity = 729/773 (94.31%), Postives = 729/773 (94.31%), Query Frame = 1

Query:    1 MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETVLSLVKAAAAXAATNITSTASSTAFFTTVGRRERAWSETLWSAAANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT 2319
            MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TVLSLVK                                          ASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT
Sbjct:    1 MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLHGSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKAGVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGALHALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLSLVK------------------------------------------ASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPGRSAESVRT 731

The following BLAST results are available for this feature:

BLAST of Ec-28_003050.1 vs. uniprot

BLAST of Ec-28_003050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LTS0_ECTSI	1.650e-199	94.31	PPR_long domain-containing protein n=2 Tax=Ectocar...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:2870185..2879753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	600.5
Seed ortholog evalue	1.1e-168
Seed eggNOG ortholog	2880.D8LTS0
Length	2322
Hectar predicted targeting category	other localisation
Gene id	Ec-28_003050.1
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_003050	Ec-28_003050	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_28 2870000..2880974 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003050.1	Ec-28_003050.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_28 2870185..2879753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003050.1.1	Ec-28_003050.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2870185..2870390 +
Ec-28_003050.1.2	Ec-28_003050.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2871199..2871453 +
Ec-28_003050.1.3	Ec-28_003050.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2872028..2872176 +
Ec-28_003050.1.4	Ec-28_003050.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2873414..2873666 +
Ec-28_003050.1.5	Ec-28_003050.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2874885..2875083 +
Ec-28_003050.1.6	Ec-28_003050.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2875289..2875413 +
Ec-28_003050.1.7	Ec-28_003050.1.7	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2875774..2876109 +
Ec-28_003050.1.8	Ec-28_003050.1.8	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2876959..2877133 +
Ec-28_003050.1.9	Ec-28_003050.1.9	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2877436..2877522 +
Ec-28_003050.1.10	Ec-28_003050.1.10	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2877712..2877812 +
Ec-28_003050.1.11	Ec-28_003050.1.11	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2878383..2878527 +
Ec-28_003050.1.12	Ec-28_003050.1.12	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_28 2879463..2879753 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-28_003050.1	CDS:Ec-28_003050.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_28 2870185..2870390 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_28:2870185..2879753+
coding sequence from alignment at chr_28:2870185..2879753+

mRNA sequence

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=774bp
MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLH
GSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKA
GVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGAL
HALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTY
SAAMRACRAAGRTGEALSLLETMRRSARGERERGGDAESGEANAASLRPD
AFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGMAG
LWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKEARL
AGIEVGASAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLID
VCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKSGDGTVS
SPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPL
VEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRADLLPTTYS
FSSAVKSCERAGKADEVLALLGRMKSGGVSRTLITFNSALLACAKDGRRE
DSLRILSEMKKEGVSPDGKSFRLAMQACGRAGDPAGALVILRGMAKAGIP
PGDRSFASAMEAFALAGDVETVLSLVKAAAAAAATNITSTASSTAFFTTV
GRRERAWSETLWSAAANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKA
LRLLADSFRTAGPPGRSAESVRT*

spliced messenger RNA

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2322bp|location=Sequence derived from alignment at chr_28:2870185..2879753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCATGGTCAGCAGCCTGCTGCTTCTCTTGGTTTCGTGCTCGCATC
GCCATCAGCCCCCATCCCACTGCGAAGAAGCGCGCATAGGATCAGTTGCG
CCACAGCTGCGACGAGGACGCGGTGCTGGCGGGGGTCGAGCTCTCTGCAC
GGTTCTCGACTCTTAGACTCGGATGGTCACGTCGCTGCCTCTAGTGATAT
TGCAAGGGCGCAGAAACGACGTCGCCGTCCGAGGGAGAGCAGCGCCGGAG
GCTCGTGGCGGCAGTGGCGCGAAGGAGGAAAGGGTGCAGATGGGAAGGCG
GGTGTGCCAGCACCAGCACGTGGTAAGGCCGGAGGCAAGGTGGTGAGCCT
CAACGGGTCTCCGCCGCCCGAGGAGGAGGAGGGGGCCCACAGATTGTTGG
AGAGAGACATCAAGGCCAGGGGGAGACGCCGGGATTGGCGGGGCGCCCTC
CACGCTTTGCGGTCGGCGGAGGGGGCGGCTTGCGCACGGTGCCACACCTC
GGCTGTGGAGGCTATGGCCACGTCGGGGCGATGGAAGGAGGCGTTGGCGC
TCCTGAAGGACATGCCGAGACAGGGGGTGCGGCCGGATATACACACGTAC
AGCGCTGCGATGAGGGCCTGTAGGGCAGCAGGTCGAACGGGAGAAGCCCT
CTCTCTCCTAGAGACTATGCGGCGATCTGCGAGAGGGGAGCGGGAAAGAG
GGGGCGACGCCGAATCGGGGGAGGCGAACGCGGCGTCGTTAAGGCCGGAC
GCGTTTTGCTTCAACATTTGCATCGACGCGTGCGCTAAGGGACGCCTCCA
CGAGAGAGCGAAAGCGTTGCTTGGGGTCATGCGTTCGGACGGTGTATCGC
CGGACGTCGTCAGCTTCAACAGCGTGATCAACGCCTTGGGTATGGCGGGC
CTCTGGAAGGAAGCCCTCGGCGTGATGGAAGAGATGGTGATGGACGGTGG
GGTGACGCCGAATTCTGTAACGTACGCCTCCGCCATTAACGCCTGCGGGA
ACTCCCGGCAGCTGGACCGGGCACTCGGCCTGCTTAAGGAAGCTCGACTA
GCGGGGATTGAGGTGGGTGCGTCGGCGTACAACGCTGCGATCGCGGCTTG
CGGCCACGCGGGATCTGCCGACGAAGCCCTGCCGCTGCTGAAGGAGATGG
AGGAGAGGAGGGTGCCCCGCACCGTGATAACTTACAGCTCCTTGATAGAC
GTGTGCGGCAAAGGCGGGCTACCAGACGAGGCTCTCAACCTCTTCCAGAA
AATGATATCGGAGGGAATCCTGCCGAACGCCATCACCTACAACGCGCTCA
TTCACGCCTCCGCGGGCGGCGGATTAAAATCCGGGGACGGAACTGTTTCA
TCCCCTGTTTCCGGAGGACGCGGTAGAATAGGGGCTTCGGGCGGTGGCGA
AGATGATCCAAGGGACGAGGGGGGGGAGGTACTGGGTGCGGAGCCCGCGG
GAGGCAAGGGGTTGGGGGGGATAAGACGCTGGGAGCGCGTGATGCCGCTG
GTTGAGGAAATGCAGAAGGCGGGGTACCAACCCGACCTGCTGAGCTTCAA
CCTCGCCCTGTCTGCGTGCGCGAGAAGGGGAGACGCAAATAGGACGCTTC
GTCTGCTGGGGGACATGAGACGGGCGGACCTTCTCCCCACCACGTACAGC
TTCAGCTCGGCAGTGAAGTCATGCGAGAGGGCCGGGAAAGCGGACGAGGT
GCTGGCCCTCCTGGGCCGGATGAAGTCTGGTGGCGTGAGCCGCACCCTCA
TCACCTTCAACTCCGCACTCCTCGCCTGTGCTAAGGACGGTAGGCGAGAG
GACTCCCTCCGCATCCTGTCGGAGATGAAGAAAGAAGGTGTTTCCCCGGA
CGGGAAGTCTTTCCGCCTCGCCATGCAGGCTTGCGGGCGTGCCGGAGACC
CGGCAGGGGCTCTGGTGATTCTGCGGGGCATGGCAAAGGCGGGGATACCG
CCAGGGGATCGCTCGTTCGCGTCGGCAATGGAGGCGTTTGCTTTGGCTGG
GGACGTCGAAACCGTGCTCTCCCTCGTGAAGGCCGCCGCCGCCGCCGCCG
CCACCAACATCACGAGCACCGCCAGCAGTACCGCCTTCTTCACCACCGTG
GGGAGGCGGGAACGCGCGTGGAGCGAGACCCTGTGGTCGGCCGCCGCTAA
CGGGCAGGCGTCAGCGATGCTCGAGCTGCTGGTGGCGATACGGGAGGAGG
AGGAAGGGCTCCTTAAGCTCACGGGGGCGCACTACGTCTACAACAAGGCC
CTGCGGCTGCTAGCTGATTCGTTCAGGACTGCGGGGCCGCCAGGCAGAAG
CGCAGAGAGCGTCCGCACTTAA

protein sequence of Ec-28_003050.1

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=774bp
MHHGQQPAASLGFVLASPSAPIPLRRSAHRISCATAATRTRCWRGSSSLH
GSRLLDSDGHVAASSDIARAQKRRRRPRESSAGGSWRQWREGGKGADGKA
GVPAPARGKAGGKVVSLNGSPPPEEEEGAHRLLERDIKARGRRRDWRGAL
HALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTY
SAAMRACRAAGRTGEALSLLETMRRSARGERERGGDAESGEANAASLRPD
AFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGMAG
LWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKEARL
AGIEVGASAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLID
VCGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGGLKSGDGTVS
SPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPL
VEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRADLLPTTYS
FSSAVKSCERAGKADEVLALLGRMKSGGVSRTLITFNSALLACAKDGRRE
DSLRILSEMKKEGVSPDGKSFRLAMQACGRAGDPAGALVILRGMAKAGIP
PGDRSFASAMEAFALAGDVETVLSLVKAAAAAAATNITSTASSTAFFTTV
GRRERAWSETLWSAAANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKA
LRLLADSFRTAGPPGRSAESVRT*

mRNA from alignment at chr_28:2870185..2879753+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9569bp|location=Sequence derived from alignment at chr_28:2870185..2879753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCATGGTCAGCAGCCTGCTGCTTCTCTTGGTTTCGTGCTCGCATC
GCCATCAGCCCCCATCCCACTGCGAAGAAGCGCGCATAGGATCAGTTGCG
CCACAGCTGCGACGAGGACGCGGTGCTGGCGGGGGTCGAGCTCTCTGCAC
GGTTCTCGACTCTTAGACTCGGATGGTCACGTCGCTGCCTCTAGTGATAT
TGCAAGGTAAATGACAGCGGCAGGTGTCTCTACAACCAACGGTACCTTGT
TGTGCGGAAGCGAGTTGGCTACCGCTGACCTCGGCTGCCTGTATATACCC
CTGCTATGTCTATGTTCAACGCTGTGCTTTGCCTGAGTTTTTACCTGCTG
CATAGACGAGAGATGGACATGGGACAACACTGATATTGGCGCTCTAAATT
CAAGATGATTTGGGTCGAACATCGAAAACGGCCCGGGCTCATGTACAGCA
GCATGTAAGACTTGCAGAAGTAACCCTTCCTTTTGCGCAAATACCTGTAG
CCATTGAACGTAGTGCATGGCGACGTGTGCGTTGGTATGCATACTCTCAG
ATCTGATGCTGGGGCTTTGATGTCGAAGGCTGCCGCCGGGTCGCCGGGTC
CAAAAACTCGCAGTTCTGGTTCCAAACCCAAATATCATCGCTTCACAGCA
GGCCACGAGCCCCTATCCCCCCGACTGCGGGTCGCCCAAAGCAGCTATGT
ACAAGGGAGTTACTGCTGTACACCCGCAGTTCAGGAGATCGGGCCTTTTG
ACGACGAGTGCAGCTGCTGTAGAATATGGTATGGCTTGGCATCGACGGTT
GGTCCACTGGTGTGTGTGTGTCTGTGTAGCATGCGAACCATTTTCGCCCC
TATCTATCAAGGAAACTTCCGACGCCCAATGAATCTAATTTCTCGAGCAA
CAAGCGCCCCCAGTTGTGATAGCCCTAACCCTAACCCTAGTCCTAGTGCT
GCTAAGTACGCACAAGCAAGAGAAGTAACAGCAGTACCCTGCCTTGCTGC
ATTGTTTTTGTCAGGGCGCAGAAACGACGTCGCCGTCCGAGGGAGAGCAG
CGCCGGAGGCTCGTGGCGGCAGTGGCGCGAAGGAGGAAAGGGTGCAGATG
GGAAGGCGGGTGTGCCAGCACCAGCACGTGGTAAGGCCGGAGGCAAGGTG
GTGAGCCTCAACGGGTCTCCGCCGCCCGAGGAGGAGGAGGGGGCCCACAG
ATTGTTGGAGAGAGACATCAAGGCCAGGGGGAGACGCCGGGATTGGCGGG
GCGCCCTCCACGCTTTGCGGTGAGCGCTTTCAAGAGTGGAGTCACCACGC
GTGCAAGGATGCCCCGCACGTGGCCTTGCCTCAGTATTGAGATGGCGTTT
TTGGGAGGGGGCTGGAAGACACAACCAGTACGGCGCCGTTCATCTCTCGC
CGTTCGCGGGGGCTTCCCGGGAGGGACGGCATTATTTCCATTCTACATTA
CGGTGCCCCACGCTGCTCGGTACAATCGATCTTCACCGGCCAGGTTTTCT
GTGTTTTCGGGGTCAACGCGCCGACGATCCACAGCTAGTGTTGCCAAAGA
ACATTGTCCTTCCTACGTTAGCTGCTGCTACTGCCGCCTATATGCCGTCA
GTGTTGTGTCGCCCTCGGCGTGGTCCGGACCGTGATAATGATGGACTTCC
CTTTCCCTCCCTCCATTTTATACATTTGCGCAGGCTTGATGTCTTCGGTT
CTCGTTCTCCCTCCCCTCCTCAGGTGCCTGTGTCACTATTCGGTTGTGTC
CGCCCGTCTATCTGTCTCCAACAACCCGAACCCGTTGCACCCACCAACCC
AGCGACGTTTCACTCCTCCACGCCCCAACGCGCACGGCGACAGGTCGGCG
GAGGGGGCGGCTTGCGCACGGTGCCACACCTCGGCTGTGGAGGCTATGGC
CACGTCGGGGCGATGGAAGGAGGCGTTGGCGCTCCTGAAGGACATGCCGA
GACAGGGGGTGCGGCCGGATATACACACGTACAGCGCTGCGAGTGAGAAA
AACCGGCCGGTACTCTTGTTTTTGTTTTGGTAGGGGTTTCCTTTCTTCTC
TTTCGAAGGACGTTCATTCCACTTGAAGAGGCCAAGGCTGCAACAACCAA
GGGAGTGAAACGGCACAGCCATCACGGTCTCGCCACCGGTGTTTCGCGTT
CGGGTGGGCGCGCTTCTCCCGTGAAAGGAAAAAGAAATTCAGACGAATGT
GTGAGGCAAAGCTTGAAGCTGGCGCACAAACCCAATCCCTCTTCCCCTTC
GCTGGCTTCGGGCAGACTTCCACATCGCGTTTCTGCCCGAAGCCTGACTT
GATATCTACCTTTCCTCGGGCAGAACCATCGCCATGTAGGACTCTGTGCC
AAGCCAAACAGTAGGCAAGAGGGATTGGGTTTAGGCGCCAGCCTCGAACT
GTGCCTCACACAATATCGGAAGTATTTTCGAACTCGTGGGGGGGACACCC
CCCAGGCTCTAGTGCATACAGCAGAGACCCTGGGTCAAACCATGTCGTGA
TACTTACCTCTCTTGTGAACTGAACAGAACGCCGCGATGTTGATATGCTG
TTACCTTGGTCTCGACTAGGCTAGGGCCGGGGGGTTACCCCAAGAGGACC
CCTACGGCGCGATTCGATATTCTCACGCATGAAATCTCCTTTGAGCCGTG
CGATTTTTGTATCGCGTCCACCTAGTGCAAGAGAGCGGTTGCGAGCGAGG
CGCGCGCTCCCGACCCCCCGCCCCCCGCAAACCACGGCACACGATCTGAG
TTGTAATTCTGCCGTACTCCAATAACCCGAGCAATTCAGCCGGTGCCCTA
AGGGTTGTCGTGGTTGATGCTACAATGCTGTTCAACAAAGAATGCCCGCT
TGCACATTTCGGTGTAATAGCTGTGTGGTGACGGGTTGGATGTATTTCCG
GGTGAGCTTGTCTCCGTTGAGCATATGAATGTGCATGGGAATTGAAGTTC
GTTGGCGGAACGAAGCAGGTTCTTTCTTCCCCTCTTTCTTACGGAGCCCC
CCTTCCCCTCGGTACTTGTAGCCCTGCGGTGCGAGACAATAGTCCTCCTT
TCGTGCTCCTTATCACCCACATCTCCCACATCTCCCGTTTCCACGATTTC
CCTTTACTCCCTATTACAACTGCGGCTGTGTGTTGTGTCCTTTGGTAGTG
AGACACTGGCCTTTTTGTAGTGACAATCTGGCCATTTCTCATCACTACTA
GCTGCCGTTGTGCGTCTCGTATTTTACAGTGAGGGCCTGTAGGGCAGCAG
GTCGAACGGGAGAAGCCCTCTCTCTCCTAGAGACTATGCGGCGATCTGCG
AGAGGGGAGCGGGAAAGAGGGGGCGACGCCGAATCGGGGGAGGCGAACGC
GGCGTCGTTAAGGCCGGACGCGTTTTGCTTCAACATTTGCATCGACGCGT
GCGCTAAGGGACGCCTCCACGAGAGAGCGAAAGCGTTGCTTGGGGTCATG
CGTTCGGACGGTGTATCGCCGGACGTCGTCAGGTTAGTTAGGGCATCGGT
TTTGCACACCTCAGCTGTTAGAAGAAGCGTTCTCGAGAGGACGGAGCATT
TGTTCCGACAGAACCGATCACCGATGGCCAATCGTTCCTTCCTACCCTGC
CAAAGGTGGCTCAAGAACGTTTTCGCTGTCCTCTCTATCCTGTCGAAATC
ACTTCCCGCCTGTGTCCGCCCAACTTCTGTGCCCCAGTATAGGTGCCGTC
TTCTACTGGCTATTTCATGCCTTACACCTCTATATATGGAGGGCGGTTAT
TGTATTTATGTGGTCAAGCCTGGTCGGCGAAAACGAGCTCTTGTTTCCGA
CAGCCCGTAGTCACCAGCACACGTAATTGCAGCTCCAAAAGTGTGGGGCT
GGTCAGGACTAACCTTTAAACGCGCTCGTGTCCTTCGGTGCTGTGATCGA
TCTCATCTCATCAAGTGGTGTGCGAGTCGTATGCTACGGCGCAACCCCCT
GGCAGTTGCGGCTTAAGCCGTGTGAACGATCATCAGAGCGCGACCAGCAG
AATGTCGACAATACAAGTCGTTCGGACGCCTGTTCTCTGCTTTTTTTTTG
TCGTCACTCTTTGTTTTGCTCTCTTTACTTGCGATGAAAAATCACAATCA
TTCTGTCGTTTCACATGTTCACATGACAAAGTTCCAGCTCCCCCGGCGTG
ATCGACGCTCTAGGAAATACGCCATTGTCTGTGCCAACCCATTTGCTGGT
ATGCGTTGGTTTTGCGAGATTCAACCGCAGCGTGATCAACCATCAACCAC
GAGCAACTGCCTATGATGAAATCACACGCGGCTCGTTGTTCGGCATGTGC
CAGTATAACCTACGCTGCTTCTTGGCATAAACATTTTCTGCGGCAAGAGA
AAAACACCATACTCGAAGTACTTATATTCGAATGTGTTGGTAAATTAATT
GCTCGTCACACGCACTAGGTACACTGTTTTTCTCCAGACTCAATAGCCAG
CAGGGTTGTGAGAACATCCAAGGATAACTTCTCAGAACCATACAGACGGC
CGAACCATCTAACGTTTCGGTATGCCGCCCTCAACAACGTGTTGCCGCAT
ATCCACGGTTGCACGTTCCAGCTTCAACAGCGTGATACCGCATCCCACGG
TTGCACTATTCCAGCTTCAACAGTGTGATACCGCATCCCACGGTTGCACT
ATTCCAGCTTCAACAGCGTGATACCGCATCCCACGTTTTCACTATCCCAG
CTTCAACAGCGTGATCAACGCCTTGGGTATGGCGGGCCTCTGGAAGGAAG
CCCTCGGCGTGATGGAAGAGATGGTGATGGACGGTGGGGTGACGCCGAAT
TCTGTAACGTACGCCTCCGCCATTAACGCCTGCGGGAACTCCCGGCAGCT
GGACCGGGCACTCGGCCTGCTTAAGGAAGCTCGACTAGCGGGGATTGAGG
TACGCTAATACGTTAAAAGGGGTAGAGATGGCACCTCCCATATCCTCAGT
GCAAACACCACCACCACCACCAAGATGTTCCACTATCGAGAAACCACAAT
AATATTGTCCGTGCCTTCGCGCAACCGATGTCCACCCCAACCCCAAGCGC
AACCAAACCATCGGCTATGTGTGTATCGCGACGCCCCCCCCCCCCCCGAA
AAAGGTGGGTGCGTCGGCGTACAACGCTGCGATCGCGGCTTGCGGCCACG
CGGGATCTGCCGACGAAGCCCTGCCGCTGCTGAAGGAGATGGAGGAGAGG
AGGGTGCCCCGCACCGTGATAACTTACAGGTAAGTGCGTGTTTTGTTTTT
CTTTTGTCGTTTTTTTTGCTTTGTTTCCCCACACCGCCACAGCCTCCTAC
TCACGACTACAACTCCTGCTTTACCGCCGTTCGACACAATATTTTTTCCC
CTTTTGCGGTTGGCTCTGTCGGCGCTTCTCTCTTTACCATTGGCTGCCCG
TATTGTCTCCGTCTGTGTCTGTGTCTGTGTCTTTGTCTTTCTGTGCCTCT
GTAGTTGTCTGCGTCTCTTGGTTTCTGGTGTATCTGTCTCTGTCTGTGTC
TGTCTCACACACCTTTGTGTGTGTCTATCCTTCCATGCTTTTTTGTACCC
CCCCCCCCTCCTCCCCCCACCCCTATTCCCCACACACAGCTCCTTGATAG
ACGTGTGCGGCAAAGGCGGGCTACCAGACGAGGCTCTCAACCTCTTCCAG
AAAATGATATCGGAGGGAATCCTGCCGAACGCCATCACCTACAACGCGCT
CATTCACGCCTCCGCGGGCGGCGGATTAAAATCCGGGGACGGAACTGTTT
CATCCCCTGTTTCCGGAGGACGCGGTAGAATAGGGGCTTCGGGCGGTGGC
GAAGATGATCCAAGGGACGAGGGGGGGGAGGTACTGGGTGCGGAGCCCGC
GGGAGGCAAGGGGTTGGGGGGGATAAGACGCTGGGAGCGCGTGATGCCGC
TGGTTGAGGAAATGCAGAAGGCGGGGTGCGTGTCCTTCTGCCGACGGCAG
TTATTGTAGCTAACCGGTGTAACGACGAGATGTTTTATGGTCATTGGATA
ACGTTGAGATGAGGAGCATGAGACACGACGTACATGTGTTGAGAAGGAAA
CGAAGACATGTTGGACGGGTTGGATACGCTGGGATACCACGATGGTAGAA
GCGCTGGCTTGACAGTCTCGTGTAACTGTCGCATCCCGAAAGCCGTAGAT
GTTTCACCAATCGCTCATTTCCCTATAGATCAAGAGTCCTTTGACAGCAT
GCAACGTCGATCTCGCGTTTATCGTACATTCAGACCAGTCCGTAAGGAAG
ACTCCACGACCCGGCTTGCCGAGCTTGTCTCTGCGAGGCAGTCGCCTTCT
AAGGTTTTTCTATTGAGTAAAAATGTTGGATAAGGCATGCAATCGGGGAA
GTTGGGTTAGGGTTAGGGTTAGGGAATGCGGTCTGCGTGCCCCCTCCCTG
ATCTATTTCCTCATGGCCTTATCAATCTCGGGAAGGCGGTCCTGTCTCTC
CCTGTTGGCTGAGCACGAGGGTCGATGCAGCTCCGTACAGCCCGTACCTT
TTCATGGAGGTCGCTCGGTTTCGTTGCTGGGTTTGACGAGCCATCAGGCG
CAACCTCGATGCGCGCAGCTCCAAACCAACGTCGCCAGACAGTCGGACAA
CCGCAGGCCCTGATTTTGGCCCTTCGTCTTGTGTACAGTTGTTTTTGTTG
TTGACGTGTAAAGATACCTCGTTCGCTCTTTCACGTCAAGAACTGATCCG
ATCCGTCATCAACCTTTGCCATCTACCTACACGTCTCCGGTTAACGTGAT
ACCTCTGTTTGGTCAACGAAACAGGTACCAACCCGACCTGCTGAGCTTCA
ACCTCGCCCTGTCTGCGTGCGCGAGAAGGGGAGACGCAAATAGGACGCTT
CGTCTGCTGGGGGACATGAGACGGGCGGACCTTCTCCCCACCACGTACAG
CTTCAGCTCGGCAGTGAAGTCATGCGAGAGGGCCGGGAAAGCGGACGAGG
TATGGTATATCTTAACGCGCTAACCAACTACGTACCGCGCCGTAGATTAT
ATGTTTACACGCTAATGTTACTTCCGCGTTAGTTGGAGTAGAGGAATGGA
TGGTATTCGAAGGCGTAACCTTTATTTGATGTATTTTTTTTTATGTGAAA
GACAACAGTAGTAGGCAGAAGCCGAAACCGTTTTTTTTTGTGAAAAAAAT
TAACAAGAACGACAACAGCGGGAACACCAACTCATTGTGGAGGCATCAAT
ACCAACCATTTTTACACGATTCGCTTTTTGTTTGTCTTATTACCCCGGCA
GGTGCTGGCCCTCCTGGGCCGGATGAAGTCTGGTGGCGTGAGCCGCACCC
TCATCACCTTCAACTCCGCACTCCTCGCCTGTGCTAAGGTGAGTCGATGA
ACCCCGCTACCGTTTTGTACCGGACTTTGTTGTTAATTTTTTTTCTTCTG
TTCCAGTAGCTTGTGATAAAAGTCAGGGCAAGCACCGCAGAAGGCACGCG
AAGAAACACTTTGTGGCTGCCCGATGTTTACACACACTGTTCTGGCGCAT
CGCCCCACTTTTTTGCTGTCTTGGCAGGACGGTAGGCGAGAGGACTCCCT
CCGCATCCTGTCGGAGATGAAGAAAGAAGGTGTTTCCCCGGACGGGAAGT
CTTTCCGCCTCGCCATGCAGGCTTGCGGGTAAGCAGCATTTTGCTTTCTT
TTTTTTTGTAATATACATCCCACAGAAAGACTGACAGTGCCACAGTCGAT
CAGTCGATGGGAATGTGTCGCAGTCTTCGAAGCGAGTGGGACAATTTGCT
ATTTTTGCGGTTGTTTTTTCGCCAAGAATGTTTGTGTGTGGTTTTGGGTG
GGGGGGTCGTCAGGGCGGATAAGAACATTTCGATACGTGTTGTACCGAGC
ACCGGCGTTCGCTGCCTTGTCGTAGGGCCAACGTCGCGGTGGTATGTAAG
GGGTTGCAGACCACTTCCCCAGCAACCTCAGCACTACTCTCCGCATGTTA
TTTTCGTGTTTTTTTTTTCGCCAAGAAGGTACGTATGCGTGCGCGGACAG
AAGGCGACGGGGGTGGAAGGTGGAAGCCTTTGCCTCTCTCTGAATTTGGT
ATTCGTTTTTCTTGTTTTCTGGCGTTTTGCGCCGTAGTATACAAACGGAA
AAGTGGGCCTTCTTGCACGCACATTCGAATCTCGCGTATCGGCTCCACAC
CACCCCATGCTCGCCGAAAAATCGACGAAAAATGAAATGAAAACGCAGGC
GTGCCGGAGACCCGGCAGGGGCTCTGGTGATTCTGCGGGGCATGGCAAAG
GCGGGGATACCGCCAGGGGATCGCTCGTTCGCGTCGGCAATGGAGGCGTT
TGCTTTGGCTGGGGACGTCGAAACCGTGCTCTCCCTCGTGAAGGTATATT
TGTTGTTGTCAAAAAGACGGCGAAACCGTGCTCTCCCTCATGAAGGTGGT
ATATTCGTTGTTGGCAATGCGCGTGTGCGCACAGCAATAGTTCGTTCGAC
CAAGGGAGAGGCCCTTGGTGCCATGTCCAAGTCCCCCCAGAGCGAAAGAA
ACACCGTGAAACGTTTTTGCCATGCCCTCTTTACGCCGGTTGGTGGTCTT
TCTACGGTCGTGGTAGCTCCTGCGCGCTCTCAAACCTGACACTTGCCACA
TATTCTACATGTCGAGAATATTACGTAATGCCATCGTTATCGAACAGAGT
GTGTGAATGCAGAACAAGCTCCACAAGGCGAAGCTGAGGTATTCGTTGCT
GTTTCCTTATTGACGAAAAAATAGCAGCCGCCAGCTAATCCCCATGCTTC
CAACTGGGGCAATACGCTCGATCTCTGTGGCGCTGGTACTCATGGATTAC
TGCGGCCACCCCCCTTGCTTCATCCCCCAACCACCTGGAATGACACCGCA
CCCCCCTCGTCCCGAGCCGCATTTTTTTGTTGTTGAAAACCGTCCGTGTG
ATGAAAACGAAACCCCAGGAAGCGCGGGCTGCATCCCTTAGCGGGGACGG
AAAGCCGTACTGGTCGAGCACCCTGACCGGTGCGAAGGCGTGCGCGGCTG
CCGGGAGGTCGGCGGACGCCGTTGGTCTGTTGCGGGATCTTCCCCCGGAC
AGCGACGATGACGACCTCTGTCCGGACCGGAGATCCCCCCCGGTGGCGGT
GGTTCTTGAGGCGGAGAGCGAGATGCCCGCTCGGCGAGGGTACCACCAGC
AGCAGCAGCAGCAGCAGCAACAACAACAACAGCATCAGCAACAGCAGCAG
AAGTACCAGCAGCACCAGCACCAGCAGGAATCGCAGCACCAGCAGCGGCC
CCTCCTTGGTGCTGATCACGCCCCAGAGGCCGCCGCCGCCGCCGCCGCCA
CCAACATCACGAGCACCGCCAGCAGTACCGCCTTCTTCACCACCGTGGGG
AGGCGGGAACGCGCGTGGAGCGAGACCCTGTGGTCGGCCGCCGCTAACGG
GCAGGCGTCAGCGATGCTCGAGCTGCTGGTGGCGATACGGGAGGAGGAGG
AAGGGCTCCTTAAGCTCACGGGGGCGCACTACGTCTACAACAAGGCCCTG
CGGCTGCTAGCTGATTCGTTCAGGACTGCGGGGCCGCCAGGCAGAAGCGC
AGAGAGCGTCCGCACTTAA

Coding sequence (CDS) from alignment at chr_28:2870185..2879753+

>Ec-28_003050.1 ID=Ec-28_003050.1|Name=Ec-28_003050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2322bp|location=Sequence derived from alignment at chr_28:2870185..2879753+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACCATGGTCAGCAGCCTGCTGCTTCTCTTGGTTTCGTGCTCGCATC
GCCATCAGCCCCCATCCCACTGCGAAGAAGCGCGCATAGGATCAGTTGCG
CCACAGCTGCGACGAGGACGCGGTGCTGGCGGGGGTCGAGCTCTCTGCAC
GGTTCTCGACTCTTAGACTCGGATGGTCACGTCGCTGCCTCTAGTGATAT
TGCAAGGGCGCAGAAACGACGTCGCCGTCCGAGGGAGAGCAGCGCCGGAG
GCTCGTGGCGGCAGTGGCGCGAAGGAGGAAAGGGTGCAGATGGGAAGGCG
GGTGTGCCAGCACCAGCACGTGGTAAGGCCGGAGGCAAGGTGGTGAGCCT
CAACGGGTCTCCGCCGCCCGAGGAGGAGGAGGGGGCCCACAGATTGTTGG
AGAGAGACATCAAGGCCAGGGGGAGACGCCGGGATTGGCGGGGCGCCCTC
CACGCTTTGCGGTCGGCGGAGGGGGCGGCTTGCGCACGGTGCCACACCTC
GGCTGTGGAGGCTATGGCCACGTCGGGGCGATGGAAGGAGGCGTTGGCGC
TCCTGAAGGACATGCCGAGACAGGGGGTGCGGCCGGATATACACACGTAC
AGCGCTGCGATGAGGGCCTGTAGGGCAGCAGGTCGAACGGGAGAAGCCCT
CTCTCTCCTAGAGACTATGCGGCGATCTGCGAGAGGGGAGCGGGAAAGAG
GGGGCGACGCCGAATCGGGGGAGGCGAACGCGGCGTCGTTAAGGCCGGAC
GCGTTTTGCTTCAACATTTGCATCGACGCGTGCGCTAAGGGACGCCTCCA
CGAGAGAGCGAAAGCGTTGCTTGGGGTCATGCGTTCGGACGGTGTATCGC
CGGACGTCGTCAGCTTCAACAGCGTGATCAACGCCTTGGGTATGGCGGGC
CTCTGGAAGGAAGCCCTCGGCGTGATGGAAGAGATGGTGATGGACGGTGG
GGTGACGCCGAATTCTGTAACGTACGCCTCCGCCATTAACGCCTGCGGGA
ACTCCCGGCAGCTGGACCGGGCACTCGGCCTGCTTAAGGAAGCTCGACTA
GCGGGGATTGAGGTGGGTGCGTCGGCGTACAACGCTGCGATCGCGGCTTG
CGGCCACGCGGGATCTGCCGACGAAGCCCTGCCGCTGCTGAAGGAGATGG
AGGAGAGGAGGGTGCCCCGCACCGTGATAACTTACAGCTCCTTGATAGAC
GTGTGCGGCAAAGGCGGGCTACCAGACGAGGCTCTCAACCTCTTCCAGAA
AATGATATCGGAGGGAATCCTGCCGAACGCCATCACCTACAACGCGCTCA
TTCACGCCTCCGCGGGCGGCGGATTAAAATCCGGGGACGGAACTGTTTCA
TCCCCTGTTTCCGGAGGACGCGGTAGAATAGGGGCTTCGGGCGGTGGCGA
AGATGATCCAAGGGACGAGGGGGGGGAGGTACTGGGTGCGGAGCCCGCGG
GAGGCAAGGGGTTGGGGGGGATAAGACGCTGGGAGCGCGTGATGCCGCTG
GTTGAGGAAATGCAGAAGGCGGGGTACCAACCCGACCTGCTGAGCTTCAA
CCTCGCCCTGTCTGCGTGCGCGAGAAGGGGAGACGCAAATAGGACGCTTC
GTCTGCTGGGGGACATGAGACGGGCGGACCTTCTCCCCACCACGTACAGC
TTCAGCTCGGCAGTGAAGTCATGCGAGAGGGCCGGGAAAGCGGACGAGGT
GCTGGCCCTCCTGGGCCGGATGAAGTCTGGTGGCGTGAGCCGCACCCTCA
TCACCTTCAACTCCGCACTCCTCGCCTGTGCTAAGGACGGTAGGCGAGAG
GACTCCCTCCGCATCCTGTCGGAGATGAAGAAAGAAGGTGTTTCCCCGGA
CGGGAAGTCTTTCCGCCTCGCCATGCAGGCTTGCGGGCGTGCCGGAGACC
CGGCAGGGGCTCTGGTGATTCTGCGGGGCATGGCAAAGGCGGGGATACCG
CCAGGGGATCGCTCGTTCGCGTCGGCAATGGAGGCGTTTGCTTTGGCTGG
GGACGTCGAAACCGTGCTCTCCCTCGTGAAGGCCGCCGCCGCCGCCGCCG
CCACCAACATCACGAGCACCGCCAGCAGTACCGCCTTCTTCACCACCGTG
GGGAGGCGGGAACGCGCGTGGAGCGAGACCCTGTGGTCGGCCGCCGCTAA
CGGGCAGGCGTCAGCGATGCTCGAGCTGCTGGTGGCGATACGGGAGGAGG
AGGAAGGGCTCCTTAAGCTCACGGGGGCGCACTACGTCTACAACAAGGCC
CTGCGGCTGCTAGCTGATTCGTTCAGGACTGCGGGGCCGCCAGGCAGAAG
CGCAGAGAGCGTCCGCACTTAA

Synonyms

The feature 'Ec-28_003050.1' has the following synonyms


Synonym
Esi0009_0122
Esi_0009_0122