Ec-28_003820.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003820.1
Unique NameEc-28_003820.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length71
Homology
[Close]
BLAST of Ec-28_003820.1 vs. uniprot
Match: D7G060_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G060_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.040e-10
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 MMVDDGTTINGIMIDAPEQDNSGDPAGVLSHMHTLRC 111
            MMVDDGTTINGIMIDAPEQDNSGDPAG  +  H   C
Sbjct:    1 MMVDDGTTINGIMIDAPEQDNSGDPAGFPATWHGPPC 37
[Close]
BLAST of Ec-28_003820.1 vs. uniprot
Match: D8LTK1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 8.920e-5
Identity = 22/26 (84.62%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:    4 MVDDGTTINGIMIDAPEQDNSGDPAG 81
            M DDGTTING MID PEQDNSGDP G
Sbjct:    1 MEDDGTTINGTMIDGPEQDNSGDPPG 26
The following BLAST results are available for this feature:
BLAST of Ec-28_003820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G060_ECTSI2.040e-1078.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTK1_ECTSI8.920e-584.62Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3691745..3692429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length213
Hectar predicted targeting categoryother localisation
Gene idEc-28_003820.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003820Ec-28_003820Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3691745..3692429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003820.1.3Ec-28_003820.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3691745..3691782 -
Ec-28_003820.1.2Ec-28_003820.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3692015..3692108 -
Ec-28_003820.1.1Ec-28_003820.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3692349..3692429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003820.1CDS:Ec-28_003820.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3691745..3691782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003820.1Ec-28_003820.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3691745..3692429 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003820.1 ID=Ec-28_003820.1|Name=Ec-28_003820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=71bp
MMVDDGTTINGIMIDAPEQDNSGDPAGVLSHMHTLRCRTPSLSMRVLASH
LEILVLAKVSGDLAWASLLC*
back to top

spliced messenger RNA

>Ec-28_003820.1 ID=Ec-28_003820.1|Name=Ec-28_003820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=213bp|location=Sequence derived from alignment at chr_28:3691745..3692429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTGGACGACGGCACCACCATCAACGGCATCATGATCGATGCTCC
GGAACAGGACAACAGTGGCGACCCTGCTGGGGTCCTGTCGCATATGCATA
CACTTCGATGTCGGACGCCATCATTGTCTATGCGTGTGCTTGCCAGCCAT
CTCGAGATCCTTGTCCTAGCGAAAGTTTCCGGCGACTTGGCATGGGCCTC
CCTGCTCTGCTGA
back to top

protein sequence of Ec-28_003820.1

>Ec-28_003820.1 ID=Ec-28_003820.1|Name=Ec-28_003820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=71bp
MMVDDGTTINGIMIDAPEQDNSGDPAGVLSHMHTLRCRTPSLSMRVLASH
LEILVLAKVSGDLAWASLLC*
back to top

mRNA from alignment at chr_28:3691745..3692429-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003820.1 ID=Ec-28_003820.1|Name=Ec-28_003820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=685bp|location=Sequence derived from alignment at chr_28:3691745..3692429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGTGGACGACGGCACCACCATCAACGGCATCATGATCGATGCTCC
GGAACAGGACAACAGTGGCGACCCTGCTGGGGTGAGAAGGTTGCGCGGGC
TTTATATTTCTGGTGTTGTAGCTGCTGTGCCGTGGGTTACGGAAACCGGT
TGTCTGCCTTTAGTCGTTGGCTCCCCCTTCCGGCTACTTTACTTCCATGT
GAAAGACTTTCAAGATGGGCCCATGAAGGATGCCTAAAGGGGTGAGGATG
CGCAAGTACAAAATATTTTGAACAAATAATTGTGGGGTGTTGTCCTTTCA
CGTCTGTCTTTCCTGCCGCAGGTCCTGTCGCATATGCATACACTTCGATG
TCGGACGCCATCATTGTCTATGCGTGTGCTTGCCAGCCATCTCGAGATCC
TTGTCCTAGCGAAAGGTGAAATCCGTGTAGACTACAAGTATGCCGTGCAA
GGAAGGAAGGGCACAGCAGGCACGGCACGAAAGGGGCGACACACAAGAGA
CATTTTTTTTCAAGACCCTAGACCACGCCTACAGTAGTCTAAAGTAGGTT
GGAATCTGACGCTGGTGTGTGTAACACCAGGCGTGTGTGCAGTTTTTGGC
TGTTGTTGTATTTCTTGTCTTTTTCCATTTACCGTCGTCGCTGGCAGTTT
CCGGCGACTTGGCATGGGCCTCCCTGCTCTGCTGA
back to top

Coding sequence (CDS) from alignment at chr_28:3691745..3692429-

>Ec-28_003820.1 ID=Ec-28_003820.1|Name=Ec-28_003820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=213bp|location=Sequence derived from alignment at chr_28:3691745..3692429- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGTGGACGACGGCACCACCATCAACGGCATCATGATCGATGCTCC
GGAACAGGACAACAGTGGCGACCCTGCTGGGGTCCTGTCGCATATGCATA
CACTTCGATGTCGGACGCCATCATTGTCTATGCGTGTGCTTGCCAGCCAT
CTCGAGATCCTTGTCCTAGCGAAAGTTTCCGGCGACTTGGCATGGGCCTC
CCTGCTCTGCTGA
back to top
Synonyms
The feature 'Ec-28_003820.1' has the following synonyms
Synonym
Esi0394_0016
Esi_0394_0016