Ec-28_003460.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003460.1
Unique NameEc-28_003460.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length298
Homology
BLAST of Ec-28_003460.1 vs. uniprot
Match: D8LTN2_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN2_ECTSI)

HSP 1 Score: 610 bits (1572), Expect = 9.090e-221
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 1
Query:    1 MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD 891
            MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD
Sbjct:    1 MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD 297          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A6H5KNK6_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK6_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 4.810e-86
Identity = 146/278 (52.52%), Postives = 189/278 (67.99%), Query Frame = 1
Query:   10 GSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTE 840
            GS +KR   W+ W+GN  FF  GRI++G H R L  +  +L  T  LFF FI LP+  YG W+F + V+ CL  GC +SL  ++ +DPGIIPRR  A     D    DV ++ S C+TC + RPPR KHCK CNNCV+ FDHHCP+TGNC+GARNYRAFMAFI +VTIS    CA+SV+H V  R  +VGP+ L +   +PGS+    +L +WTA++ VLVG LL FH++L+AKGQTTNEYLR E   G+   R F  +C ELWCG +P S+L+DM+E
Sbjct:  523 GSPKKR---WQRWRGNNKFFCEGRIMLGVHYRQLMTTTMLLFLTWLLFFVFI-LPS--YGRWSF-AMVAACLCTGCFVSLVFSSFLDPGIIPRR--AASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRAFMAFIILVTISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRLVSPVLGMWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQPASMLADMSE 790          
BLAST of Ec-28_003460.1 vs. uniprot
Match: D7FZN5_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN5_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 5.090e-76
Identity = 130/272 (47.79%), Postives = 172/272 (63.24%), Query Frame = 1
Query:   10 GSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATI---LLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARP 813
            GS +KR   W+ W+GN  FF  GR       R      ++   +   A L ++       +YG W+F + V+ CL  GC +SL  ++ +DPGIIPRR  A     D    DV ++ S C+TC + RPPR KHCK CNNCV+ FDHHCP+TGNC+GARNYR+FMAFI ++TIS    CA+SV+H V  R  +VGP+ L +   +PGS+F   +L LWTA++ VLVG LL FH++L+AKGQTTNEYLR E   G+   R F  +C ELWCG +P
Sbjct:  171 GSPKKR---WQRWRGNNKFFCEGRFFFRGGGRGTQGGGSLGSGVGGVAALAWSECCCSLPSYGRWSF-ALVAACLCTGCFVSLVFSSFLDPGIIPRR--AASGLPDSIPEDVRDQLSYCITCHIVRPPRTKHCKHCNNCVLTFDHHCPWTGNCVGARNYRSFMAFIILITISSSLVCAMSVVHTVT-RTGHVGPMYLTDSVNLPGSRFVSPVLGLWTAMITVLVGALLCFHVYLLAKGQTTNEYLRGEKRRGNVPHRSFGPNCRELWCGTQP 435          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A6H5LMK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMK7_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 7.070e-75
Identity = 131/223 (58.74%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  145 TLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARP 813
            TL   F SLPATTYG  AFFSTVSVCLFVGCI+SLASTAMMDPGIIPRRTLALWNSLDPASP +AERK C +CQLARPPRAK+CK                                                                      GSQF PHLLALWTAVVM+LVGGLL FH+FLV K QTTN YLRREAPSGSRLGRPFL+SCHELW GARP
Sbjct:   11 TLPLDFFSLPATTYGVQAFFSTVSVCLFVGCIVSLASTAMMDPGIIPRRTLALWNSLDPASPGIAERKFCGSCQLARPPRAKYCK----------------------------------------------------------------------GSQFVPHLLALWTAVVMILVGGLLCFHVFLVTKSQTTNLYLRREAPSGSRLGRPFLASCHELWSGARP 163          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A835YZ83_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ83_9STRA)

HSP 1 Score: 202 bits (515), Expect = 9.300e-60
Identity = 115/280 (41.07%), Postives = 161/280 (57.50%), Query Frame = 1
Query:   28 RQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS---------CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTE 840
            R+ W+ W+GNA F   G++++G HC  L  + +++L T  LF  F+   A  Y GW +   V   + V C+++LA TA+ +PGIIP +         P S D AE  S         C+TC + RPPRAKHC+ CN CV  FDHHCP+ GNCIG RNYR+F+ F+ ++         LS +H +  R  NVGP  L + + +PGS++    L +W  +V  +VGGLL  H++L+ +GQTTNE+L+ E P   R GR  +  C  LWC   PPSLL    E
Sbjct:   45 RKWWQQWRGNARFLCDGKLMLGVHCDQLWVTGSLILGTWLLFLVFV---APNYTGW-WCVGVGAAMLVLCLVTLAETAVTEPGIIPPQ---------PRS-DAAEGMSASTRGKLNYCITCHIVRPPRAKHCRHCNVCVRRFDHHCPWIGNCIGHRNYRSFLRFLIVLAXXXXXXXXLSAIHALT-RLGNVGPEDLTSQSGVPGSEYVSPFLGVWALLVTAIVGGLLLLHMYLLFQGQTTNEFLKGE-PVHVR-GR-VMRKCLLLWCERLPPSLLPPFDE 306          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A812WJG5_SYMMI (Palmitoyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WJG5_SYMMI)

HSP 1 Score: 174 bits (440), Expect = 3.650e-48
Identity = 111/290 (38.28%), Postives = 151/290 (52.07%), Query Frame = 1
Query:   34 QWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFT----FISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAER-KSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLL-----------ALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTD 855
            +++ W+G   F  GGRI++G+H   L  S T+L+ T +LF       + +P   Y G        V L VG +  L  TA+ +PGIIPRR  +    L+  S D  ++ + C TC++ RPPRAKHC+ C+NCV  FDHHCP+TG CIG RNY  F  FI++ T+S  FAC+ S               L+V WA   G    P LL             +T +V VLVG LL+FH+FL+ + QTTNE+LR   PS S        +  +L   + P S L  M E    D
Sbjct:   85 RYQLWEGKNKFLCGGRIMMGAHSNHLLLSITLLVVTYSLFLLGVVPLLHMPILFYIG--------VGLAVGTLTFLLLTALTEPGIIPRRPPS--KLLESMSEDARQKLQYCHTCRIVRPPRAKHCRYCDNCVEVFDHHCPWTGTCIGVRNYAYFCVFITLATVSAAFACSTSA-------------YLIVQWAE--GRNHEPRLLMYIRDVVAPLVCAFTLLVFVLVGSLLAFHLFLIGRQQTTNEFLRGVRPSHSDYKNSTTGNVVKLCNTSIPDSKLLPMWEKCQAD 349          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A7S3UWP6_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWP6_HETAK)

HSP 1 Score: 167 bits (422), Expect = 1.410e-45
Identity = 89/211 (42.18%), Postives = 115/211 (54.50%), Query Frame = 1
Query:  223 LFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRAD----NVGPVLLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRPFLSSCHELWCGARPPSLLSDMTE 840
            L    +  L  TA+ DPGIIPR   +    ++   P++ E+ + C TC + RPPR KHC+ CNNC+  FDHHCP+TGNCIG RNYR F  F+  +T S  +   +S  ++     D        +    W +I G QF   LL LWT +V  LVG LL FHI L+ +GQTTNEYLR E   G        ++C  LWC   P S L  M E
Sbjct:    9 LMAASVAFLLVTALRDPGIIPRHPPS--QLVESMPPEMKEKMNYCPTCHIVRPPRTKHCRHCNNCIQTFDHHCPWTGNCIGRRNYRFFYLFLMSITASSAYVLVMSANYLTRHLTDIDSKYFDAIFKDEW-KIKGGQFIAPLLILWTLLVTTLVGALLVFHIILLGRGQTTNEYLRGEKNRGDIPHGNIFTNCGNLWCHDMPESRLLPMWE 216          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A6A7G8Q1_9CRUS (Palmitoyltransferase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8Q1_9CRUS)

HSP 1 Score: 148 bits (373), Expect = 4.280e-39
Identity = 92/268 (34.33%), Postives = 135/268 (50.37%), Query Frame = 1
Query:   37 WECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVN-WARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRP----FLSSCHELWCGARPPSLL 825
            W+ W GN  F   GRI++GS    L  +  +L     +F  F+      Y      + V   LF  C++ L   A+ DPGI+PR  +   +   P        + C TC+L RPPRAKHCK C+NCV +FDHHCP+ G C+G RNYR F+ F+  V ++  F  A SV  +V    ++      +N +A    S      L ++TA V + V GL S+H+ L+ +GQTTNE +R+      R+  P    +  +C   +C   P S +
Sbjct:   19 WKQWPGNNIFLCHGRIMLGSDVSFLGVTVVLLTGPFVIFILFVGFEIH-YS----LAIVGAVLFAICLVFLTQAALTDPGILPRSNIPRPDPHQPHQITARGFRYCSTCKLYRPPRAKHCKYCDNCVRQFDHHCPWVGTCVGLRNYRFFVYFVFSVCLTSGFVFATSVAVLVLNTTNSDADGHWINRFADAITSNPASLALVIFTAFVFLSVLGLASYHVNLILQGQTTNENMRQVF---RRVHNPNDHGYKKNCDSTFCSRIPISQI 278          
BLAST of Ec-28_003460.1 vs. uniprot
Match: F0Y087_AURAN (Palmitoyltransferase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y087_AURAN)

HSP 1 Score: 146 bits (368), Expect = 5.630e-38
Identity = 93/256 (36.33%), Postives = 135/256 (52.73%), Query Frame = 1
Query:   10 GSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPV-LLVNWARIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPSGSRLGRP 771
            G  R   +++E W GN  FF GGR+++G  C  L  +A ++  T    F F++ P   +        ++V     C + LA+ A  DPGI+PR  L   + L     +   R + C TCQ+ RPPRAKHC+ C+NCV  FDHHCP+ G C+GARNYRAF+ F+        + C+ +  ++V  R   V      V++ R         +   W+AVV + V  L++FH++L+   QTTNEYLR E     R G P
Sbjct:   20 GKARSSFKRYEQWPGNNFFFCGGRLMLGVDCDRLLATALLIATTWAGHF-FVTWPNLDFDERCGAGGIAVL----CFVCLAAAATRDPGIVPR--LPRSDRLSGLPCETQYRMNWCQTCQILRPPRAKHCRYCDNCVRVFDHHCPWLGTCVGARNYRAFVLFLVWTLAGALYVCSRAARYLV--RCSTVHACSAYVDFGR----PIVAGISVAWSAVVALPVATLIAFHLYLMGHDQTTNEYLRDE-----RRGHP 257          
BLAST of Ec-28_003460.1 vs. uniprot
Match: A0A7R9UDC7_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC7_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.120e-36
Identity = 90/248 (36.29%), Postives = 133/248 (53.63%), Query Frame = 1
Query:    7 VGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATLFFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLALWNSLDPASPDVAERKS-CVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTGNCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWARIPGSQFFPHLLAL----WTAVVMVLVGGLLSFHIFLVAKGQTTNEYLR 735
            V +L   ++ +E W+G  +F   GRI++G+    L  +  ++L T  +F   I +P       A    +S  LF   +++L  TA+ DPGI+PRR  +      P    + ER   C TC + +P R KHC+ C+NCV EFDHHCP+ GNCIGARNYR F+ FI    ++  F  ++S+   ++         L+V     PG+     +LAL    WT ++  LVG L  FH  L+  GQTTNEY++
Sbjct:  107 VSTLDMSKKHFEQWKGRNSFLLRGRIMLGAMAHQLGITLVLMLITWGIFLCLI-VPLLRN---AVLVVLSFMLFTTQLVALLCTALTDPGILPRRPPSAVVESMPMQ--MKERMHYCPTCHIIKPHRTKHCRICDNCVQEFDHHCPWVGNCIGARNYRFFLLFIISTVLACVFVLSVSLYAFLSGTGG-----LIVQVQDDPGADTVLRVLALVLVFWTFLLTALVGALTFFHCSLMCMGQTTNEYVK 343          
The following BLAST results are available for this feature:
BLAST of Ec-28_003460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTN2_ECTSI9.090e-221100.00Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KNK6_9PHAE4.810e-8652.52Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FZN5_ECTSI5.090e-7647.79Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5LMK7_9PHAE7.070e-7558.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ83_9STRA9.300e-6041.07Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A812WJG5_SYMMI3.650e-4838.28Palmitoyltransferase n=1 Tax=Symbiodinium microadr... [more]
A0A7S3UWP6_HETAK1.410e-4542.18Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A7G8Q1_9CRUS4.280e-3934.33Palmitoyltransferase n=1 Tax=Hirondellea gigas Tax... [more]
F0Y087_AURAN5.630e-3836.33Palmitoyltransferase n=1 Tax=Aureococcus anophagef... [more]
A0A7R9UDC7_9STRA5.120e-3636.29Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3278045..3281389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score610.9
Seed ortholog evalue3.1e-172
Seed eggNOG ortholog2880.D8LTN2
Length894
KEGG koko:K16675,ko:K20030,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal anchor
Gene idEc-28_003460.1
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003460Ec-28_003460Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3278045..3281389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003460.1Ec-28_003460.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3278045..3281389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003460.1.1Ec-28_003460.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3278045..3278120 +
Ec-28_003460.1.2Ec-28_003460.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3278295..3278385 +
Ec-28_003460.1.3Ec-28_003460.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3278743..3278849 +
Ec-28_003460.1.4Ec-28_003460.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3279805..3279973 +
Ec-28_003460.1.5Ec-28_003460.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3280264..3280428 +
Ec-28_003460.1.6Ec-28_003460.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3280703..3280912 +
Ec-28_003460.1.7Ec-28_003460.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3281314..3281389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003460.1CDS:Ec-28_003460.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3278045..3278120 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003460.1 ID=Ec-28_003460.1|Name=Ec-28_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=298bp
MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATL
FFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLA
LWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTG
NCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWA
RIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPS
GSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD*
back to top

spliced messenger RNA

>Ec-28_003460.1 ID=Ec-28_003460.1|Name=Ec-28_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=894bp|location=Sequence derived from alignment at chr_28:3278045..3281389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGTGGGATCTCTCCGCAAGCGCAGACAGCAATGGGAGTGCTGGCA
GGGGAATGCCAACTTCTTCGCAGGGGGACGAATTGTGGTTGGATCGCACT
GCCGAGCACTGGCATTCAGCGCGACAATTCTTCTCTTCACGGCGACGTTG
TTCTTCACTTTCATCAGCCTTCCTGCTACGACGTACGGGGGATGGGCCTT
CTTCTCCACGGTTTCGGTCTGCCTGTTCGTGGGGTGCATCATCTCGCTCG
CTTCTACGGCGATGATGGACCCTGGGATCATTCCTCGACGAACTCTGGCG
TTGTGGAACTCATTAGACCCGGCCTCTCCTGACGTTGCCGAGCGAAAATC
CTGTGTCACGTGCCAGCTCGCGCGTCCCCCGAGGGCCAAGCACTGCAAGA
GGTGCAATAACTGCGTCATGGAATTTGATCACCACTGCCCATTCACGGGC
AACTGCATCGGCGCACGCAACTATCGCGCGTTCATGGCCTTCATTTCTAT
TGTTACCATCAGCGAGTTCTTCGCCTGCGCGTTGAGCGTGCTGCACATCG
TCGCCCCCCGAGCTGACAACGTCGGTCCGGTCCTTCTCGTGAACTGGGCC
AGAATCCCGGGCAGTCAATTCTTCCCCCACCTGTTGGCTCTATGGACAGC
TGTGGTTATGGTTCTCGTGGGGGGGTTGCTATCTTTCCACATCTTCCTTG
TGGCGAAGGGTCAAACAACCAACGAGTACCTCAGACGCGAGGCGCCAAGC
GGCAGTCGCTTGGGTCGACCCTTCTTGTCTAGCTGCCACGAATTATGGTG
CGGGGCACGGCCACCGAGCCTGCTGTCAGACATGACGGAGTCCGTCAACA
CCGACAACTCCGCTGGTGGCACAGATGACACAAACCATGACTAG
back to top

protein sequence of Ec-28_003460.1

>Ec-28_003460.1 ID=Ec-28_003460.1|Name=Ec-28_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=298bp
MNVGSLRKRRQQWECWQGNANFFAGGRIVVGSHCRALAFSATILLFTATL
FFTFISLPATTYGGWAFFSTVSVCLFVGCIISLASTAMMDPGIIPRRTLA
LWNSLDPASPDVAERKSCVTCQLARPPRAKHCKRCNNCVMEFDHHCPFTG
NCIGARNYRAFMAFISIVTISEFFACALSVLHIVAPRADNVGPVLLVNWA
RIPGSQFFPHLLALWTAVVMVLVGGLLSFHIFLVAKGQTTNEYLRREAPS
GSRLGRPFLSSCHELWCGARPPSLLSDMTESVNTDNSAGGTDDTNHD*
back to top

mRNA from alignment at chr_28:3278045..3281389+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003460.1 ID=Ec-28_003460.1|Name=Ec-28_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3345bp|location=Sequence derived from alignment at chr_28:3278045..3281389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACGTGGGATCTCTCCGCAAGCGCAGACAGCAATGGGAGTGCTGGCA GGGGAATGCCAACTTCTTCGCAGGGGGTGAGCAACTTAGGGCTGCAGTAA CACGATGGTTATAATCGACCCGCGCGAGCATCGAGGCTGAATGAAGAACT ACCTTCGAGATGTGAACAGTTTAGGCTACGATTGTTCTTCGTTTTCCCCT CGTTACGATAACGTACCTTTACCCAATCACCTGGGTGGATTCTGGCTCAG GACGAATTGTGGTTGGATCGCACTGCCGAGCACTGGCATTCAGCGCGACA ATTCTTCTCTTCACGGCGACGTTGTTCTTCACTTTCATCAGGTAAGCGAA GGGCAATTCAGAGCTAAGATGGCGTACACTGCCCGGGGTGTATCCATGGC TCGAAGCGGGTTGAACATAATCATTTTTGCAGTTGCCGAAGGGGTCATCC ACTAGTCCTGGGCCCATAGACATTGGTGTCGTGCTCGCTCGCCTTTATCC GTATGTATCGGTTTCTTGTTACTGCTGTACATGTTCTTCGAGTAAAGTTC CAGATGCTCGCCCACAAAGGTATCACGTTGGAATGATCGCAGCAAATTGT TCCACGTCGATGCTTGAAATGCGCGTGACTTGAGAGCTAGGCGCCCGAAG ATGAACGGTAGACATCGACCCACCCACTCTCCCCCTTGGTTTTTTCAGCC TTCCTGCTACGACGTACGGGGGATGGGCCTTCTTCTCCACGGTTTCGGTC TGCCTGTTCGTGGGGTGCATCATCTCGCTCGCTTCTACGGCGATGATGGA CCCTGGTGCGCAAGCAAATGGTTTTAAATGCGTATGATACGTCGAGGCGA TCGAAAAAGGATCGCGAGCCCCCAACGCCTTTCGACGACGATTTGTTTTT CCATGTTGGTGTCGGCGAAGAGATGTGTGATGCTGGTGGCAGAAGATGCG AATCGAATCCCGTCACCCACCAACAGCGGTGGTAGCAACCAACAATGTTC CCAACAACAGATGGTGGCAGCCACCAAGAACGAGAAGGGCCAAAACAACG GGAAATCGAATAATTTAATAGAAGTTCTGATGACGTAGCGGGTATGGGGC ACTCGTGAACATACCCAGAAGACTGAGACGAGGAAACTTGATTAACCGGC TGCCGTCCGGGTTCCGGTTCCCCCTAAAAAGGCTCTAATGTTATTGGTCA CATTTACCTAATGTCTACCGACGACGACGCCTTCTTGTTGGATCGGACAC TTACCTTTGGCGCTGCAACGTCATTTCGACCCAACTTTTTCTCGTTTTCG CCGAGGAACCTGCAGCATCTTCTAATATTCCAGTTTGGCTTATTGCTCTT CGCTGTCCAACGACGTCGTCCGGCTGAGATATCGACTTCCTCACTATTGG GATCTCAGAATAATTTTTTTTGCTCTAATCGTGACACGAGTCTTGTCGGT GTGTCTTTCAATATTCCGAGTTCGCCTTGAACGACCTGCGTGATATATCG CCATCTCATTTATTGAACGTCACTCTAGATCTCTACCTGCCCTACAACCT GTTCCCTAACTCAAGATCCCCGACCCGGGGTCAGACAGCAGAAAAGGGTC CAGGCGCCCATCCTTCAAATCCTTGAAAAACCCTCACGAACAAAAGCTTA TCATACCTAGGGTTTCTCTATCCCCCCTCCCAGGAGGTCGCCATTGCAAG TGTTTGTATTGCATCACATATCTCCCCTACTCCCCACCGCGGCTTCGTGT TCTTTGGCAGGGATCATTCCTCGACGAACTCTGGCGTTGTGGAACTCATT AGACCCGGCCTCTCCTGACGTTGCCGAGCGAAAATCCTGTGTCACGTGCC AGCTCGCGCGTCCCCCGAGGGCCAAGCACTGCAAGAGGTGCAATAACTGC GTCATGGAATTTGATCACCACTGCCCATTGTAAGTCATTTCGCAGTGTAG CTTGCACATCAACGTTGCAGAAAACATAGTAGCATTATGATGGATTGAGA TTATATGACTATTATTAGAAAAACTGATGTTTAGTAAGTGCAACACCCCA ACACACCCCAACCTCCTTTTCAAGTACTCGTGGATGGTTTTGTGACAGCC GTACTTGTTCGGTCGCACGAATACATTTTTGGAGTGGCTGCATCGGCGAT CTCGATCACTGCAGAAATGAACGCGCTGCCCTACATGACCTTTGTCTTGT TGCTACTCGCTCCTTCTAGCACGGGCAACTGCATCGGCGCACGCAACTAT CGCGCGTTCATGGCCTTCATTTCTATTGTTACCATCAGCGAGTTCTTCGC CTGCGCGTTGAGCGTGCTGCACATCGTCGCCCCCCGAGCTGACAACGTCG GTCCGGTCCTTCTCGTGAACTGGGCCAGAATCCCGTGAGATTGACTATTG TCGTATTTCCTTGCAAATCGCTCGCAGGTGTTTAGCTCCAATTGCACTAT GTTTGTTTAGGGTCTCTCAAGTGGTCAGTACAATCCGTGGTTGTAGAATC AACACGAGCCCAAAACAAGGCCGGCAAGATTCACGTGTCGTGGAGCTGAA GGAATCTTCGTGGTATGGTGGTAGGTATTTCGCGTGTTTGCGTCAGCATT TCATCATAGATGACTTCCACCCTACCTCCTGCGTGTCCTGCCTCCTGCTT GTTCGCAGGGGCAGTCAATTCTTCCCCCACCTGTTGGCTCTATGGACAGC TGTGGTTATGGTTCTCGTGGGGGGGTTGCTATCTTTCCACATCTTCCTTG TGGCGAAGGGTCAAACAACCAACGAGTACCTCAGACGCGAGGCGCCAAGC GGCAGTCGCTTGGGTCGACCCTTCTTGTCTAGCTGCCACGAATTATGGTG CGGGGCACGGCCACCGAGGTGAGTACATGCGTGGAAAGAGAACAATGGTC GTCCTTAGGAAATAAGGGCATGGAGAAGACAGGGGCGTACGCGGGAAAGA GAGAGGGTGTGCCGGGGGAGGCACTCTGAGCCAACCTCAGGATCCAACAC CCGCATAGAATTGCCACAGAATACACCCACCCACGACCACAAGGGTGGGA CTAATGCCATCCCAATACTTTTGAACGTTGCTGCCGATCGGTCATGGGTG TCATTCCCTGACCGACCGCCTACCCGGCGCGATAATTTCCGTCCGGGGCC GCCTGTTTCGTTTGTTCTTGATCTTCCCCTGTTCTCTGTGCCGTTTCCCT TTTTTCTCTCTCTCGCGCGTCGAAATCCTGTGCATTACCCCATCAAATGA CCGTTGGACGGACAATCAGCCTGCTGTCAGACATGACGGAGTCCGTCAAC ACCGACAACTCCGCTGGTGGCACAGATGACACAAACCATGACTAG
back to top

Coding sequence (CDS) from alignment at chr_28:3278045..3281389+

>Ec-28_003460.1 ID=Ec-28_003460.1|Name=Ec-28_003460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=894bp|location=Sequence derived from alignment at chr_28:3278045..3281389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACGTGGGATCTCTCCGCAAGCGCAGACAGCAATGGGAGTGCTGGCA
GGGGAATGCCAACTTCTTCGCAGGGGGACGAATTGTGGTTGGATCGCACT
GCCGAGCACTGGCATTCAGCGCGACAATTCTTCTCTTCACGGCGACGTTG
TTCTTCACTTTCATCAGCCTTCCTGCTACGACGTACGGGGGATGGGCCTT
CTTCTCCACGGTTTCGGTCTGCCTGTTCGTGGGGTGCATCATCTCGCTCG
CTTCTACGGCGATGATGGACCCTGGGATCATTCCTCGACGAACTCTGGCG
TTGTGGAACTCATTAGACCCGGCCTCTCCTGACGTTGCCGAGCGAAAATC
CTGTGTCACGTGCCAGCTCGCGCGTCCCCCGAGGGCCAAGCACTGCAAGA
GGTGCAATAACTGCGTCATGGAATTTGATCACCACTGCCCATTCACGGGC
AACTGCATCGGCGCACGCAACTATCGCGCGTTCATGGCCTTCATTTCTAT
TGTTACCATCAGCGAGTTCTTCGCCTGCGCGTTGAGCGTGCTGCACATCG
TCGCCCCCCGAGCTGACAACGTCGGTCCGGTCCTTCTCGTGAACTGGGCC
AGAATCCCGGGCAGTCAATTCTTCCCCCACCTGTTGGCTCTATGGACAGC
TGTGGTTATGGTTCTCGTGGGGGGGTTGCTATCTTTCCACATCTTCCTTG
TGGCGAAGGGTCAAACAACCAACGAGTACCTCAGACGCGAGGCGCCAAGC
GGCAGTCGCTTGGGTCGACCCTTCTTGTCTAGCTGCCACGAATTATGGTG
CGGGGCACGGCCACCGAGCCTGCTGTCAGACATGACGGAGTCCGTCAACA
CCGACAACTCCGCTGGTGGCACAGATGACACAAACCATGACTAG
back to top
Synonyms
The feature 'Ec-28_003460.1' has the following synonyms
Synonym
Esi0009_0062
Esi_0009_0062