Ec-28_003410.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003410.1
Unique NameEc-28_003410.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length323
Homology
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BLAST of Ec-28_003410.1 vs. uniprot
Match: D8LTN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN6_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 2.590e-180
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 1 
Query:    1 MRPTLALLSALLASLVHFPRAERVLLFRGGGPSGSPPSKTRATGSRGLSDDDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVHXXXXXXXXXXXXXXXXXXXXXXXXXAGEAMTSGLDKLAEALTPPPSSKXXXXXXXXXTSRSRSQNNSIGNNANDAARTDRGKSGYGTGKXXXXXXKLGRGFWKEAFEKGEGWRSGLWGAEDDGGRWRTKKRDGXXXXXXRVRQERQRSRDDRDEQWWNMPIWSGVDDGRE 966
            MRPTLALLSALLASLVHFPRAERVLLFRGGGPSGSPPSKTRATGSRGLSDDDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVHXXXXXXXXXXXXXXXXXXXXXXXXXAGEAMTSGLDKLAEALTPPPSSKXXXXXXXXXTSRSRSQNNSIGNNANDAARTDRGKSGYGTGKXXXXXXKLGRGFWKEAFEKGEGWRSGLWGAEDDGGRWRTKKRDGXXXXXXRVRQERQRSRDDRDEQWWNMPIWSGVDDGRE
Sbjct:    1 MRPTLALLSALLASLVHFPRAERVLLFRGGGPSGSPPSKTRATGSRGLSDDDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVHXXXXXXXXXXXXXXXXXXXXXXXXXAGEAMTSGLDKLAEALTPPPSSKXXXXXXXXXTSRSRSQNNSIGNNANDAARTDRGKSGYGTGKXXXXXXKLGRGFWKEAFEKGEGWRSGLWGAEDDGGRWRTKKRDGXXXXXXRVRQERQRSRDDRDEQWWNMPIWSGVDDGRE 322
The following BLAST results are available for this feature:
BLAST of Ec-28_003410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTN6_ECTSI2.590e-180100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3235652..3238461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length969
Hectar predicted targeting categorysignal peptide
Gene idEc-28_003410.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003410Ec-28_003410Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3235652..3238461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003410.1Ec-28_003410.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3235652..3238461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003410.1.1Ec-28_003410.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3235652..3235862 +
Ec-28_003410.1.2Ec-28_003410.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3236283..3236365 +
Ec-28_003410.1.3Ec-28_003410.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3236830..3236922 +
Ec-28_003410.1.4Ec-28_003410.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3237401..3237514 +
Ec-28_003410.1.5Ec-28_003410.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3237994..3238461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003410.1CDS:Ec-28_003410.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3235652..3235862 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003410.1 ID=Ec-28_003410.1|Name=Ec-28_003410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=323bp
MRPTLALLSALLASLVHFPRAERVLLFRGGGPSGSPPSKTRATGSRGLSD
DDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAG
DIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAV
VHRATDGAKKAWRDFKQYDEAHGLTSRAGEAMTSGLDKLAEALTPPPSSK
PGGRRNSSSTSRSRSQNNSIGNNANDAARTDRGKSGYGTGKTGTGRDKLG
RGFWKEAFEKGEGWRSGLWGAEDDGGRWRTKKRDGGGGGSKRVRQERQRS
RDDRDEQWWNMPIWSGVDDGRE*
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spliced messenger RNA

>Ec-28_003410.1 ID=Ec-28_003410.1|Name=Ec-28_003410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=969bp|location=Sequence derived from alignment at chr_28:3235652..3238461+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCTACCCTTGCTTTATTGTCAGCGTTGCTGGCGAGTCTTGTTCA
CTTCCCGCGAGCTGAACGCGTGCTTCTGTTTCGAGGGGGAGGCCCGTCAG
GATCACCGCCATCGAAAACGCGTGCTACTGGTAGCCGCGGCTTAAGCGAC
GATGATGACCCCCCGCCGATTAGAGAAGTTGTCGGGGCAGGCGCCGTGGG
GGTGTTGGCAGGCCAACTCGTTTTCCAGTCCCTGTTGATCTCGGCGGGCC
TCGGTGTGACAGCGATGACCATCGCGGCTAGCTCGGCCGATGGGGCGGGG
GACATCGCAAGGTCGTCGGGGAGGATGGCGGTCGCGGCCTTCGACAGGGG
CGCAGACTTGAACGAGCGTTACCATTTCACTGAGAGGTTGGTAAACGGTG
CGAAAATTACTGGGTGGAGGCTCAAGCAGTTCGACCAAGAACACGCGGTC
GTGCACCGGGCGACGGACGGCGCGAAAAAGGCTTGGCGCGACTTCAAGCA
GTACGACGAGGCGCACGGACTGACGTCGAGGGCGGGAGAGGCAATGACTT
CAGGTCTCGACAAGCTCGCGGAAGCGTTAACCCCACCGCCCTCCAGTAAA
CCAGGAGGCAGACGCAACAGCAGCAGCACCAGCAGAAGCAGAAGCCAGAA
CAACAGCATCGGAAACAACGCTAATGACGCGGCACGAACTGACCGGGGGA
AAAGTGGCTATGGAACCGGGAAGACGGGAACGGGGCGCGACAAGTTGGGT
CGAGGCTTTTGGAAGGAGGCGTTCGAGAAGGGTGAGGGTTGGAGAAGCGG
GCTATGGGGGGCGGAGGATGACGGTGGGCGGTGGCGCACGAAGAAAAGAG
ATGGAGGAGGTGGTGGGAGCAAGAGGGTGCGACAGGAGCGCCAGCGATCA
CGAGATGATCGAGATGAGCAGTGGTGGAACATGCCAATTTGGAGCGGTGT
TGATGATGGACGTGAATGA
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protein sequence of Ec-28_003410.1

>Ec-28_003410.1 ID=Ec-28_003410.1|Name=Ec-28_003410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=323bp
MRPTLALLSALLASLVHFPRAERVLLFRGGGPSGSPPSKTRATGSRGLSD
DDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAG
DIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAV
VHRATDGAKKAWRDFKQYDEAHGLTSRAGEAMTSGLDKLAEALTPPPSSK
PGGRRNSSSTSRSRSQNNSIGNNANDAARTDRGKSGYGTGKTGTGRDKLG
RGFWKEAFEKGEGWRSGLWGAEDDGGRWRTKKRDGGGGGSKRVRQERQRS
RDDRDEQWWNMPIWSGVDDGRE*
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mRNA from alignment at chr_28:3235652..3238461+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003410.1 ID=Ec-28_003410.1|Name=Ec-28_003410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2810bp|location=Sequence derived from alignment at chr_28:3235652..3238461+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGCCTACCCTTGCTTTATTGTCAGCGTTGCTGGCGAGTCTTGTTCA
CTTCCCGCGAGCTGAACGCGTGCTTCTGTTTCGAGGGGGAGGCCCGTCAG
GATCACCGCCATCGAAAACGCGTGCTACTGGTAGCCGCGGCTTAAGCGAC
GATGATGACCCCCCGCCGATTAGAGAAGTTGTCGGGGCAGGCGCCGTGGG
GGTGTTGGCAGGTACGACCTCAGTGAATCTCGCATGTTCAAGCTGCCGTG
GTGGCCGTGTCTAGGAGTGACTAACTAGATAGACACGGGATAACGCCGGA
ACCCATCAGATTAAAAAACTCAAGTTGCAAATGCCCTTAGTGTTGTCGAC
CGGTGATCTCCTTGTGCGCACGTAGTTGCTACACGAAACACCTCCGAGTG
CGGGAGTTGTGATCACTGTGCCACGGGAACGGTTTTTCGACGCCGATAGT
CGAAAGATGCAATTAGTGCCACGAGCATTGGTGGTACGCAGATAGACTGC
CCACTCCCCCCGACACAAAAGAAAAATTGTACGCGTCGATATCTGTTGTG
CCGAAAAGCGGTTCTGGCTCCAAATGTCCAACCTTTTGACTACACGCGTC
CGTCCTGTTGCGCTCCTTGGAATGTGGGCAGGCCAACTCGTTTTCCAGTC
CCTGTTGATCTCGGCGGGCCTCGGTGTGACAGCGATGACCATCGCGGCTA
GCTCGGCCGATGGGGTAAGAGCGCCCCCGCCAATGCGTTTTGAACCGGCT
GTATTTCCTGCCGCATTCAAGCCTCTCTTAGTGTGTTGGGAATGAACTCG
TGGTGGCAGTTAGAAATAGCGACACGCACTTGCCAGGTGCACTCGAGCTG
CCGCGAATTGGGTCGCTGAGGTCCCGAGTAATGGTTGAAATATTCGTTGG
CGTATGAAATTGCTGTTGGGACCTTGGAAAAGAGCGTTGGGGGGCTAGGT
GAGGTGCAAGAAGCTGGCGCAAGCCCGTAGGAAGTGGGTTTCACTTCATC
GGTAACCGTTTGCAAGTGTTCCGAAAGAATTCACGTCGTGCGCTGCCAAC
TTGCTCGAGTCGAGTGTTTGCTGATTTAGTCAACGGTCTTGTACCGAACA
AAGGACACAACGAAATGCGTCGGTCTGAAAGCAGCGTTGCCTGTGTGCGC
TTGACTCGATCGACTCGACTGGAATCAGGCGGGGGACATCGCAAGGTCGT
CGGGGAGGATGGCGGTCGCGGCCTTCGACAGGGGCGCAGACTTGAACGAG
CGTTACCATTTCACTGAGAGGGTAAGCACGTCATGATGTTCTTGATTGTA
CTGGCTGGGTTCGGTGCTTTTCAGGTGTACGTCCGACTAAGTTGCCAAAA
TAGCGCAGACTATGCGGTTTGAACGGAAGTGGATTTTTCGGGGGGGGGGA
AGGATGGCCGTGGCGTTTCAAGATTGGTTGATGTCCACTGATGCGAACAA
GCTCGAGCACAGAATTGCGACTTTGGCGCATGGCGCTGGTACCAACAAGG
CTTGGACGGTTCGCCCTAAGGCTATACTCTGCTTACTTTCCCGCGAAGTT
CTTTACGGTGAAGCATATACTCGTTGGATCGGGCCGCGGTGTATGAAGTT
GCACGGAATTTTCCCTCTGAGTTTAGCAATCCGTGGCTCACTTCCGATAC
CTCACACCTACAAGACGATAATCTCGTTGACCTTGCAACAAACGTAGCTG
AAGTCGGTGTTCGAATGCCTCTTGTTGTGGTACGCCGCAATCATCGCAGT
TGGTAAACGGTGCGAAAATTACTGGGTGGAGGCTCAAGCAGTTCGACCAA
GAACACGCGGTCGTGCACCGGGCGACGGACGGCGCGAAAAAGGCTTGGCG
CGACTTCAAGCAGGTGACGGTCTCATGCTGTACCACATTGTGTATCTTCC
ACATCAACACATGTTCCATTTCGTGTCCATCTACCTCTTCTACTCTCTTG
ACCCGTTTGCACGATTGTTGGTAAATGATTGATGCTGAGCATGGACCACA
ACCAGCATGACGGTGCATGTGGCCGTAGGCTCCCAGTGTACGACGATGTC
GCTACTGGTGAGATGAGGCACAAGCAGATTGTTGGAAGCAGGGCCCGACA
CGCTTCCACCCCCGATTTGTTGTTTATAGTTGTCCGTGGAAACAGACGAT
GGACCTGTTGCCTGCACATGCCGTCGTTTCTGCTGCGACATGCGCCGGCG
TTCATACTCCGGAAGCCATCTCAGCCTTGACGTTTATTTTTTTCTGACAT
GCAGTTGGTAATTTCGCACACCTTATACATCCGAAGATTCGCTCGCTGGC
TTCTGGTTCCCTTGTTTTTCACCCTCCGCCACAACACCAAAGTACGACGA
GGCGCACGGACTGACGTCGAGGGCGGGAGAGGCAATGACTTCAGGTCTCG
ACAAGCTCGCGGAAGCGTTAACCCCACCGCCCTCCAGTAAACCAGGAGGC
AGACGCAACAGCAGCAGCACCAGCAGAAGCAGAAGCCAGAACAACAGCAT
CGGAAACAACGCTAATGACGCGGCACGAACTGACCGGGGGAAAAGTGGCT
ATGGAACCGGGAAGACGGGAACGGGGCGCGACAAGTTGGGTCGAGGCTTT
TGGAAGGAGGCGTTCGAGAAGGGTGAGGGTTGGAGAAGCGGGCTATGGGG
GGCGGAGGATGACGGTGGGCGGTGGCGCACGAAGAAAAGAGATGGAGGAG
GTGGTGGGAGCAAGAGGGTGCGACAGGAGCGCCAGCGATCACGAGATGAT
CGAGATGAGCAGTGGTGGAACATGCCAATTTGGAGCGGTGTTGATGATGG
ACGTGAATGA
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Coding sequence (CDS) from alignment at chr_28:3235652..3238461+

>Ec-28_003410.1 ID=Ec-28_003410.1|Name=Ec-28_003410.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=969bp|location=Sequence derived from alignment at chr_28:3235652..3238461+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGGCCTACCCTTGCTTTATTGTCAGCGTTGCTGGCGAGTCTTGTTCA
CTTCCCGCGAGCTGAACGCGTGCTTCTGTTTCGAGGGGGAGGCCCGTCAG
GATCACCGCCATCGAAAACGCGTGCTACTGGTAGCCGCGGCTTAAGCGAC
GATGATGACCCCCCGCCGATTAGAGAAGTTGTCGGGGCAGGCGCCGTGGG
GGTGTTGGCAGGCCAACTCGTTTTCCAGTCCCTGTTGATCTCGGCGGGCC
TCGGTGTGACAGCGATGACCATCGCGGCTAGCTCGGCCGATGGGGCGGGG
GACATCGCAAGGTCGTCGGGGAGGATGGCGGTCGCGGCCTTCGACAGGGG
CGCAGACTTGAACGAGCGTTACCATTTCACTGAGAGGTTGGTAAACGGTG
CGAAAATTACTGGGTGGAGGCTCAAGCAGTTCGACCAAGAACACGCGGTC
GTGCACCGGGCGACGGACGGCGCGAAAAAGGCTTGGCGCGACTTCAAGCA
GTACGACGAGGCGCACGGACTGACGTCGAGGGCGGGAGAGGCAATGACTT
CAGGTCTCGACAAGCTCGCGGAAGCGTTAACCCCACCGCCCTCCAGTAAA
CCAGGAGGCAGACGCAACAGCAGCAGCACCAGCAGAAGCAGAAGCCAGAA
CAACAGCATCGGAAACAACGCTAATGACGCGGCACGAACTGACCGGGGGA
AAAGTGGCTATGGAACCGGGAAGACGGGAACGGGGCGCGACAAGTTGGGT
CGAGGCTTTTGGAAGGAGGCGTTCGAGAAGGGTGAGGGTTGGAGAAGCGG
GCTATGGGGGGCGGAGGATGACGGTGGGCGGTGGCGCACGAAGAAAAGAG
ATGGAGGAGGTGGTGGGAGCAAGAGGGTGCGACAGGAGCGCCAGCGATCA
CGAGATGATCGAGATGAGCAGTGGTGGAACATGCCAATTTGGAGCGGTGT
TGATGATGGACGTGAATGA
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Synonyms
The feature 'Ec-28_003410.1' has the following synonyms
Synonym
Esi0009_0068
Esi_0009_0068