Ec-28_001430.3 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001430.3
Unique NameEc-28_001430.3
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length224
Homology
[Close]
BLAST of Ec-28_001430.3 vs. uniprot
Match: A0A6H5LF55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF55_9PHAE)

HSP 1 Score: 483 bits (1242), Expect = 1.020e-149
Identity = 293/504 (58.13%), Postives = 315/504 (62.50%), Query Frame = 1 
Query:  739 MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFRE--------ENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTSKRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPKAKHSSWLRDRKRLEELKAQVHR----------------------R*CCPRSGFH--LRGLLGDSF*KTNLQLLRRGGRWSSEHSAI------------------------GSALGRDAPTLDLGVRQRGNRSPV*R----------------------SRYF------------------------------QGWSLARGVPD-------------RTGRVVAPVSSLLVPEIEPVIENSSKITRGSGAEMALSKIGIPCPPDNTATVGGKPVPSLAEALRSRMVAELGEAATQIF 1887
            MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLW SSQATGFGPAARAQGRQSLEQ TVETIARVTESFR+        ENAGGGCPECMTTVLYTHRRR GKED GEGLSDDDQP G TAFTG RTS+ PRK AAR TK+ +ICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRS P+AKHSSWLRDRKRL+ELKAQ  R                         C   G    +   +G S   T  +LL  G + SS+   +                         SAL   +P L   VR+    SP                         S +F                              +G  +    PD              TGRVVAPVS+L+VPEIE    +SSKITRGSGAE+ALSKIGIPCPP N ATVGGKPVPSLAE LRSR+VAELGEAATQIF
Sbjct:   69 MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWHSSQATGFGPAARAQGRQSLEQGTVETIARVTESFRQGIYIVEKTENAGGGCPECMTTVLYTHRRRPGKEDVGEGLSDDDQPEGATAFTGARTSESPRKEAARRTKNSKICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSCPEAKHSSWLRDRKRLDELKAQTRRPVLKLISRDVFVRLAVSAVTFVHYVCLAVGAQEVVLSEIGFSPEGTTRRLLLEGMKRSSQAWTLPTFPEPKVILHPRCSPGLQRALPTDSALTSSSPLLRDVVRRTDQYSPTIANPKVLERLPALNTTPPHKSGLTSNFFVVEEDGAVCTAPSGVLLGGMRQLLISVCDKEGIEVRLDAPDISRAGRWREAFLTGTGRVVAPVSTLIVPEIE----DSSKITRGSGAEVALSKIGIPCPPGNIATVGGKPVPSLAETLRSRVVAELGEAATQIF 568
[Close]
BLAST of Ec-28_001430.3 vs. uniprot
Match: D8LGW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW0_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 2.390e-140
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 1 
Query:  739 MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFREENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTSKRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPKAKHSSWLRDRKRLEELKAQV 1398
            MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFREENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTSKRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPKAKHSSWLRDRKRLEELKAQ 
Sbjct:   70 MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFREENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTSKRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPKAKHSSWLRDRKRLEELKAQT 289
[Close]
BLAST of Ec-28_001430.3 vs. uniprot
Match: D8LGV9_ECTSI (FHA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV9_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 2.180e-76
Identity = 182/294 (61.90%), Postives = 182/294 (61.90%), Query Frame = -1 
Query: 3984 PVGKEQDGGKKRPRDEGPDVGVEERPLSSERDNLGAPADKKARVQGGGDGGERAAQLLRLPGTYIHSVQYTTGNSDSSTVRATISERRPQPRSSGCRTRVGLEGRKLELLSKPSTSTTITIAKHARIAFVPCCGPHSCLFCREALRCAHACLRLFDSSHPAICTCLCFDVLRWINHGEEGSSDDREDQNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDGEGASASEVRRIPRGDGGGDDDAGREMGADXXXXXEEGVAGEEEKFAPDVDDDDSDETSDEKGY 4865
            PVGKEQDGGKKRPRDEGPDVGVEERPLSSERDNLGAPADKKARVQGGGDG                                                                                                              AICTCLCFDVLRWINHGEEGSSDDREDQNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDGEGASASEVRRIPRGDGGGDDDAGREMGA XXXX EEGVAGEEEKFAPDVDDDDSDETSDEKGY
Sbjct:  816 PVGKEQDGGKKRPRDEGPDVGVEERPLSSERDNLGAPADKKARVQGGGDG--------------------------------------------------------------------------------------------------------------AICTCLCFDVLRWINHGEEGSSDDREDQNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDGEGASASEVRRIPRGDGGGDDDAGREMGAXXXXXEEEGVAGEEEKFAPDVDDDDSDETSDEKGY 999
[Close]
BLAST of Ec-28_001430.3 vs. uniprot
Match: A0A6H5KXX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX6_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.460e-43
Identity = 139/299 (46.49%), Postives = 143/299 (47.83%), Query Frame = -1 
Query: 3984 PVGKEQDGGKKRPRDEGPDVGVEERPLSSERDNLGAPADKKARVQGGGDGGERAAQLLRLPGTYIHSVQYTTGNSDSSTVRATISERRPQPRSSGCRTRVGLEGRKLELLSKPSTSTTITIAKHARIAFVPCCGPHSCLFCREALRCAHACLRLFDSSHPAICTCLCFDVLRWINHGEEGSSDDREDQNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDGEGASASEVRRIPRGDGGGDDDAGREMGADXXXXXEEGVAG-----EEEKFAPDVDDDDSDETSDEKGY 4865
            PVGKEQDGG+KR RDE PDVGVEER LSSERDNLGAPADKKARVQGGGD                                                                                                                                 E SSD RE+QNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDG+GAS SEVRRIPR DG GDDDAGREM  D     E          EE+ FA DVDDDDSDETSDEKGY
Sbjct:  597 PVGKEQDGGRKRLRDEEPDVGVEERLLSSERDNLGAPADKKARVQGGGD---------------------------------------------------------------------------------------------------------------------------------EDSSDGREEQNQRHARSGSYAVDQLADIAAAHHSSMASVAGAGAGDGGLLGDGDGASPSEVRRIPRRDGDGDDDAGREMDEDACGSVEXXXXXXXXXXEEDNFARDVDDDDSDETSDEKGY 766
The following BLAST results are available for this feature:
BLAST of Ec-28_001430.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LF55_9PHAE1.020e-14958.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGW0_ECTSI2.390e-14099.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGV9_ECTSI2.180e-7661.90FHA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KXX6_9PHAE3.460e-4346.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1351610..1358744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score452.2
Seed ortholog evalue1.4e-124
Seed eggNOG ortholog2880.D8LGW0
Length5424
Hectar predicted targeting categoryother localisation
Gene idEc-28_001430.3
EggNOG free text desc.Amino-transferase class IV
EggNOG OGs2CZHV@1,2SAEW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001430Ec-28_001430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1351610..1358744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001430.3Ec-28_001430.3Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1356327..1358005 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001430.3.6Ec-28_001430.3.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1351610..1355382 -
Ec-28_001430.3.5Ec-28_001430.3.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1355718..1355900 -
Ec-28_001430.3.4Ec-28_001430.3.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1356270..1356341 -
Ec-28_001430.3.3Ec-28_001430.3.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1356805..1357157 -
Ec-28_001430.3.2Ec-28_001430.3.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1357354..1357539 -
Ec-28_001430.3.1Ec-28_001430.3.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1357888..1358744 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0014303UTR:Ec-28_001430.3Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_28 1351610..1355382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001430.3CDS:Ec-28_001430.3Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1356327..1356341 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0014305UTR:Ec-28_001430.3Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1358006..1358744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001430.3 ID=Ec-28_001430.3|Name=Ec-28_001430.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=224bp
MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDH
RSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFR
EENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTS
KRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPK
AKHSSWLRDRKRLEELKAQVHRR*
back to top

spliced messenger RNA

>Ec-28_001430.3 ID=Ec-28_001430.3|Name=Ec-28_001430.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5424bp|location=Sequence derived from alignment at chr_28:1351610..1358744- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
AAAGCACCCACGCAAGCTGCTTTGCGCGGGTTGTGATGTCTGCCGCAGGG
GCATTGTGCTGCTTTGTTGCAAGTGCATTCCTGCAAGGCCAGAGTTTCGA
GTTCCCTGCTCGTGATCTTGACAGCATTGGGCTGTCTGCGAGCGAGTGGG
TTCGTGGGTTCAAGCGGAGCAGATTTAGGTGCGTGCAGGCCCGGCATGTC
TCTCCATGCAGACGAAACACAGGGCATCACTATGCATGGCGTGGTCGCAT
GACACAACACGGTTGTTCTGCGTTGTGTTTTCCTCGCGAGTTCGGAATAC
ACTCGTGCGGATTCAAAATGTAGTCTAGTCATACAATTTGGAGTACAGCA
GTAGTGTGGGGAATAGCGCCGGTACGTGCCCTGCGCATCGACCGCGATAT
TCAGAGGGAACGGCGCTACTTGGTGATTCAGTCTGTGTCCACCAATTTCA
CCGGCGCTACTCAGGGCCACCGGCGTTTATCAACCGGCGTTGTCGACCCC
CCCCCAACCGTACCACATAAATGTAACCTATTGCTGTAGTGTGGTCTGCT
GACCCCCTCGGGAAACGTGTGAACCGGGAACGCGTACAGCAGTACTTACC
GACAGCGACCCAGAGATTCCGACGGCGAAATCCACTCGAGTTGCAAATAT
GCTTATCAACCCGTTGCTGCTGCAGAAACTGTATTTCTATCGTGAGCCCA
GCAGAAGCAGACCACAACAGAGGCGGTACCGAGCTGGAAATGTCCAGCAC
GACCGCAACAAGCGTGTGGGCGACATGCGGCGAGCCCGAGGTCCGTCGAT
GTCCTGCAGGAGGCCCTCTTTCTTCACCGCAAGAGTTTCTTCTTGCCAAT
CCTCCAGGCCCGTACACGTGCCTGAGGACGGTCGACCATCGGTCGGTGGC
CATGCTGCCGTTTCATCTGGACAGGCTCTGGCAGTCTTCTCAAGCCACCG
GTTTTGGACCCGCGGCTAGGGCGCAAGGTCGGCAATCGCTGGAACAGGAG
ACGGTGGAGACCATCGCTCGGGTGACCGAATCGTTTCGAGAAGAGAACGC
TGGCGGCGGCTGCCCAGAGTGCATGACGACAGTCTTGTACACGCACCGCC
GCAGGCTTGGCAAAGAAGACGCAGGCGAGGGCTTGTCAGACGATGACCAA
CCCGGAGGAACGACAGCCTTCACGGGTACCAGAACGTCGAAACGTCCACG
AAAAGGGGCAGCCAGACCGACGAAAGACCGTGAAATATGCATTATGGCGC
ATGCCTGGCCTTTGCCCACGCCCCCGGTGGATGGAAGGCCCGCGGGAGTG
AAGGTGCTCATTGCCGGATCGGGGAGATCGTTGCCAAAAGCGAAGCACTC
GAGCTGGTTGCGAGATAGGAAACGACTGGAAGAGCTCAAAGCTCAGGTGC
ACAGGAGGTAGTGCTGTCCGAGATCGGGTTTTCACCTGAGGGGACTACTC
GGAGACTCCTTCTAGAAGGACTAACCTCCAACTTCTTCGTCGTGGAGGAA
GATGGAGCAGTGAGCACAGCGCCATCGGGAGTGCTCTTGGGAGGGATGCG
CCAACTCTTGATCTCGGTGTGCGACAAAGAGGGAATCGAAGTCCGGTTTG
ACGCTCCCGATATTTCCAGGGCTGGTCGCTGGCGAGAGGCGTTCCTGACA
GGAACCGGGCGAGTAGTGGCCCCAGTCTCCAGTCTTCTCGTTCCCGAGAT
CGAACCCGTCATCGAAAATTCAAGCAAGATCACTCGAGGAAGCGGTGCGG
AGATGGCCTTGTCCAAGATAGGCATCCCGTGCCCCCCAGACAACACCGCC
ACGGTTGGTGGAAAACCCGTGCCATCGCTGGCGGAGGCTCTTCGCAGTCG
CATGGTAGCAGAACTTGGGGAAGCGGCGACACAGATTTTTTAGTTTTGCC
TTCCTTCTTGAATCAATCGCGAGATGCAAGTATCATTTTGAACACCAAAA
TGTATCCGCTTTGTGATGTGTGTATGTGCCCGTTATCCATGCAGCTGTGG
TTGGTCTCACACTCGTAGAATGCCGTGGGGTGAATCTCGGATGATGAAAC
ACGCTCAAGTGGTAAAGAGATAAGAAGTTGAAGTTCAACAAGAACACAGC
CGGAACACTAAATTACAAGCATGAAGCAGCCGTGCGCAATGGTTGGTGGA
ATACCCATGTCCTCGGTGGCGGAGGCTCTTCGTAGTCGCATCATGGCAGA
ACTTGGGAAAGAGGCCACAACAGGCACCTGCTTCCTGACGTATCTCTGCG
TCGTGTGTGCCCACTATGAAAGGAGTTGTGATATTGTGTAAAACCCCAGG
CAGACATCGCCGCCACACTCGCAGAATGCTGCAGAGTGAATCTCGGGAAT
ATATCCGCACGCAAACTCAAGCTGACAAGTGAAATTCAACCGAGAACACG
GTAGACGACCGCGAGAAAAAAAGCATGAAGCAACCGTGCACAAACGGTTA
AGTGGAAAACCCATTCCATCGCTGGCGGATACTCTTCGTAGTCGCACGGC
GGCAAAACTTGGGAACGCGGCCACAACTGTTCTAGCTTAACTTTCCTTCC
GGAATCAATCGCAGTAAGCCATGCCATGCCGAAGGCCAAAATCCATACGC
TTGGGGACGTATGTGTGTGCTCACAAATTCATGTAGTTGTGGTTGGTGTT
GGCGTTGTTAAAGTCACAAGCGGTCATGACCGTCACGCTGCAGAGCGAAT
CTCGGGTGATGAAAGAAGAAAATGCGAACTTCAATTTACACCGAGAACAT
ATACAGACCACGAACAATTTAAAACATGAAGCAGCCGCGTGCACAAAATC
GACTCCACGTGGAGATGAGTCCTACAACTCGTGCACGCGTTCCCCAATAT
CGGCCCCAGGCGTGCCTCAAACGTGTGTCTACCGTATTGACCAACAAGCC
GCGCCGCCTACCCCGCGCTCCCCACAAAGACCCGCATAACAATTTTCGGA
TACTAGCGGGACAGTCAAACCCACCCCCGGAGTCCAGAAGGAGACAGATA
TGCTTTCACACACCGCCCGTTGCAAGACTCCAACAACCAAATCCGGACGA
CCTAGACGACCAAGCACATTTGTGCAAAGCAGGTTGATACCATGCAACAG
CCCTAGGGCGGCGCCACCACCAAACGCTTGGGTACGACGCCATCGGGGGG
ATAGAGGGCAAGAAACAATCGCCCCGTTCCATGAAGAGACTACTGCGTGA
ACTCACGAAGGTTCAAGAGGACAAAGACACTCGTGATGATCACCCAACAT
GAAGCAATACTCTTCAGATCAGGGAGACGAGCTTCGCCGCGAAGGCTAGT
ACTAGAGTACTTCGAGTTGTTGTTCGTCATCCTAGGGTAACCAATCCCGC
TTTTAAAGATCAGCGGACGTGCAATTCTGCGGTAACTCGTCGGAGAATCA
ATTTTTGTGGCACGCATTCGTGCTTTAGTAAAACAACTGAACCGAAGTAA
AATTTCTACACATCGATGCAGCACCAAAGGTCATACCATACACGCCGACA
TGTCGAACGCTCATTAAACACAGCGAGAGAAAACCCCGCTGGCTACCATG
CGCAGGAGAATAAAAACTAGCAAACCCACCGCAGTCGGCACTGCTCGGAA
AAACCAACGTCTAACCCATTGCAGTTCTCTTCAACCAAGAAAGAGCACAT
ACTATTTTTTCCGGCGAGGGACATGAGGGCACGACGAGACGCGAAAAGAT
CAGTGCCGCCTGCGGTGTCTGTTTGAGGCGTCACACGCTCTCCTCTAACC
ATTTCACTCTTCAGTAGCCTAATTACAGCAGCTTCCTTAACACCATCGCC
AACAGCAGTGGATCAGACCTTCTTGCTGTCGAACACACTAAAACATTTCC
AGAGAATGTGAGAGCACGACGAGACGCGAAAAGAGACACGGCCGCCTACG
ATGTCTGTTAGAGGCGTCACACGCCACGCTCCCCTTTTGCTCTCCAATAA
CCCAAGTGCAGCAGCTCCCCCAACAGCAGTGCATCAGTACCCCTTCTCGT
CGGAAGTCTCGTCGCTGTCATCGTCGTCAACGTCGGGTGCGAACTTTTCC
TCCTCCCCTGCCACCCCCTCCTCCTCGCTCCCGCCGGCGTCTGCGCCCAT
CTCTCTTCCTGCATCGTCGTCGCCGCCGCCATCTCCCCGCGGTATTCGTC
TCACCTCCGACGCGGATGCACCCTCTCCGTCTCCGAGAAGTCCTCCGTCG
CCAGCCCCGGCGCCCGCAACGCTTGCCATAGAGGAGTGGTGCGCGGCGGC
GATGTCCGCGAGCTGGTCAACGGCGTAGCTCCCGCTCCTCGCGTGCCGCT
GGTTCTGGTCTTCTCGGTCGTCTGAAGAACCCTCTTCTCCGTGATTGATC
CACCGCAACACATCGAAGCATAAGCATGTACATATCGCTGGATGAGATGA
GTCAAACAAGCGCAGACAAGCATGCGCACAACGCAAGGCTTCGCGACAAA
ACAAGCAAGAATGGGGGCCACAGCAGGGAACGAACGCAATACGCGCATGT
TTCGCAATCGTGATCGTGGTAGAGGTGGATGGTTTCGAGAGCAACTCCAG
CTTTCTCCCTTCAAGTCCCACGCGAGTGCGGCATCCACTTGAACGCGGCT
GCGGACGGCGCTCAGAAATTGTGGCACGAACTGTGCTCGAGTCAGAGTTA
CCAGTGGTGTACTGAACACTATGAATATAAGTTCCGGGAAGCCGTAGAAG
TTGTGCCGCTCGCTCACCACCATCACCCCCTCCCTGCACCCGGGCCTTCT
TGTCCGCGGGCGCCCCTAAGTTGTCTCGTTCTGACGAGAGCGGCCGCTCT
TCCACTCCGACATCAGGCCCTTCGTCCCTCGGGCGTTTTTTACCACCATC
CTGCTCCTTACCAACGGGCTGCTTGGAGGGGGGAGACGCGAAGCGAAACA
CAGAGCATGTGGGGCGGGCTTTGCGTAGTTCGGGTTTAGGGTTACAACAG
AGAGACGTGTGGGATGGACGGGGTGGTCCTGAAATTTTGGTGGAGGGTGT
GCAGTTGGAAACTATGTTCGACGTGTGCTGTCGAAATGGAGGACTCGTTC
CTGCGAGTGTCCAACGTTTTCGCAAAACCTTTAGCTGGAAATAGAGATCA
ATACTTTGGTGGGTGCCGTGAAGGTGTGAAACAGTGTGACCCGTCCGTGA
AACAGAATCCGAACAAACCTGCTGAGGTACGTATGAAAGAGTGTGACCAA
TCCGTTCGTCTGGATGTGCGGGGGTGGGGAGGGAACGGAATCCGAACAAA
CGTGCCCGAGGTACGTGTGAAACAGTGTGACCAGGTCCGTTTGTCTGGGT
GAGCGGGGGTACGGCATCTGGAGCGTAAGAGGTACATTCATAGGTTCTGC
TCTCACCGCCGCATCCTCCAGCTTGCTCATCTGCTGCTCCAGCTCTGACA
CCGTGAGCAGCTCGGTTTCTTGCT
back to top

protein sequence of Ec-28_001430.3

>Ec-28_001430.3 ID=Ec-28_001430.3|Name=Ec-28_001430.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=224bp
MSSTTATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDH
RSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTESFR
EENAGGGCPECMTTVLYTHRRRLGKEDAGEGLSDDDQPGGTTAFTGTRTS
KRPRKGAARPTKDREICIMAHAWPLPTPPVDGRPAGVKVLIAGSGRSLPK
AKHSSWLRDRKRLEELKAQVHRR*
back to top

mRNA from alignment at chr_28:1351610..1358744-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001430.3 ID=Ec-28_001430.3|Name=Ec-28_001430.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7135bp|location=Sequence derived from alignment at chr_28:1351610..1358744- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
AAAGCACCCACGCAAGCTGCTTTGCGCGGGTTGTGATGTCTGCCGCAGGG
GCATTGTGCTGCTTTGTTGCAAGTGCATTCCTGCAAGGCCAGAGTTTCGA
GTTCCCTGCTCGTGATCTTGACAGCATTGGGCTGTCTGCGAGCGAGTGGG
TTCGTGGGTTCAAGCGGAGCAGATTTAGGTGCGTGCAGGCCCGGCATGTC
TCTCCATGCAGACGAAACACAGGGCATCACTATGCATGGCGTGGTCGCAT
GACACAACACGGTTGTTCTGCGTTGTGTTTTCCTCGCGAGTTCGGAATAC
ACTCGTGCGGATTCAAAATGTAGTCTAGTCATACAATTTGGAGTACAGCA
GTAGTGTGGGGAATAGCGCCGGTACGTGCCCTGCGCATCGACCGCGATAT
TCAGAGGGAACGGCGCTACTTGGTGATTCAGTCTGTGTCCACCAATTTCA
CCGGCGCTACTCAGGGCCACCGGCGTTTATCAACCGGCGTTGTCGACCCC
CCCCCAACCGTACCACATAAATGTAACCTATTGCTGTAGTGTGGTCTGCT
GACCCCCTCGGGAAACGTGTGAACCGGGAACGCGTACAGCAGTACTTACC
GACAGCGACCCAGAGATTCCGACGGCGAAATCCACTCGAGTTGCAAATAT
GCTTATCAACCCGTTGCTGCTGCAGAAACTGTATTTCTATCGTGAGCCCA
GCAGAAGCAGACCACAACAGAGGCGGTACCGAGCTGGAAATGTCCAGCAC
GACCGCAACAAGCGTGTGGGCGACATGCGGCGAGCCCGAGGTCCGTCGAT
GTCCTGCAGGAGGCCCTCTTTCTTCACCGCAAGAGTTTCTTCTTGCCAAT
CCTCCAGGTACATGCACAATGCAGCTGAATGATTCCTGTTTCGAGGCACG
AAATAGCCGCTACTCTGCGTGCGATAATATCGTATGCAAACCGCGTCACA
AAACGCGACATCATGCACCAACAACCCCTTATTTTCGTTGAAAGAGTCTG
CACACAGTGCACATATGAACAGCGGTCAGCAGTTTTAACAGGGGTGATGA
CGACTGCTAATGAACTACTACAGCATATGTCGTTGTATCTTGAGGAACGT
CTCTGCGAGTCAGACCTCGGGCACAACTTACCTGATGATCAGCTGCGATT
TGAAGGTCGTCGGCTGCGTATGGCGCGATAACACTCACTCTTTTCCTATT
CGCAGGCCCGTACACGTGCCTGAGGACGGTCGACCATCGGTCGGTGGCCA
TGCTGCCGTTTCATCTGGACAGGCTCTGGCAGTCTTCTCAAGCCACCGGT
TTTGGACCCGCGGCTAGGGCGCAAGGTCGGCAATCGCTGGAACAGGAGAC
GGTGGAGACCATCGCTCGGGTGACCGAATCGTTTCGAGAAGGTATTTACG
TTGTAGAAAAACCAGGTAGGTGCCTAGGCCGTTTCCCGTAGAGAAAAACA
GACCGTACCAGCACGAAAAGCCTGGTACTTTTTATGAAATCCTCCGTAGC
TCCTCGCTCACCGCCTTCTTCCGGCAAGAGCCGGCGTCGCGGCTCTGACC
TCTGCTATCGACTGATTTTGTGTGCCGGCTATACCAGAGAACGCTGGCGG
CGGCTGCCCAGAGTGCATGACGACAGTCTTGTACACGCACCGCCGCAGGC
TTGGCAAAGAAGACGCAGGCGAGGGCTTGTCAGACGATGACCAACCCGGA
GGAACGACAGCCTTCACGGGTACCAGAACGTCGAAACGTCCACGAAAAGG
GGCAGCCAGACCGACGAAAGACCGTGAAATATGCATTATGGCGCATGCCT
GGCCTTTGCCCACGCCCCCGGTGGATGGAAGGCCCGCGGGAGTGAAGGTG
CTCATTGCCGGATCGGGGAGATCGTTGCCAAAAGCGAAGCACTCGAGCTG
GTTGCGAGATAGGAAACGACTGGAAGAGCTCAAAGCTCAGGTAAGGTTTT
TTTTTGTGGAGTGGCGAATTAGAAACGTGTGGGTGTTACGTGCTATCTGA
ACGGTAAGCTAGTTGACACAGAGCACCCCAACAATTCACCCAAGTAGGTG
AGGCGGGGGCGCTCTTCATGGTGCAGACGCGGCGCCCGGTGCTAGAGCTT
GTCTCGTGTGATCTCTTTGTGCGGCTCGAAGTCTCTGCAGTGATGTGCGT
GCATGGCATGTGTCTTGCTGTTGGTACGTGGTATATCTTTTTCTTGACTG
CACCTGGCCGTGGCACCTCACAAGACCGAGCCTCGGAGACTCATTCGCAG
CAAAAGGTTTTTTGATGCTTTTGAAGGTAGCAGTCTTGCTGGGTTTCACT
TCACAGGGTTGCTCGCAAATTGCCGGTTCACCCACAGTCTCTGGTATATC
ATCCCTGTACCAGTTGTTTGTTGACACCCGGTTCGACCCTTTTTCGCAGA
CAGGTGCACAGGAGGTAGTGCTGTCCGAGATCGGGTTTTCACCTGAGGGG
ACTACTCGGAGACTCCTTCTAGAAGGTCTGGAAATGCTGCTATCGTTTGT
TTCTTCGTAGCGCACAAGTCCTTCGACTGTACACCACTTCATCATGATCA
CACCGCCCACTGGGACTGAGCTACTCTGCTCTTGTTTTCAGCGCCGATTG
AGGCGTGAGAAGGTTGTCACAAGCGTGGACATTTCCAACGTTCCCTGAAC
CAAAGGTCGTCCTCAATCCCCGGTGCTTGCCTCGTCTTTACCGAGCCTCG
CCACCTGATTCCGCACTGACGTCATGGTCGCCATTTGCCGCGAGACGTGG
TCCATCGAACGGATCAATGTTCACCCACAATCCCAAACCCTAAGGGTATG
GAGCGCCTCCCGGCGCTAAACACCACCCCCCCCGCACAAATCAGGACTAA
CCTCCAACTTCTTCGTCGTGGAGGAAGATGGAGCAGTGAGCACAGCGCCA
TCGGGAGTGCTCTTGGGAGGGATGCGCCAACTCTTGATCTCGGTGTGCGA
CAAAGAGGGAATCGAAGTCCGGTTTGACGCTCCCGATATTTCCAGGGCTG
GTCGCTGGCGAGAGGCGTTCCTGACAGGTAAAAGAGGAGGGTACGACCGC
GGCCCTCGTGTACGCGCATGAGGTGCATGGGTGTGCACGCTGGTGTGAGG
TGAAACATATCATGGGCATCATAAGCGGAAGACGCGAGTACGGACGCTGT
GATATCGACGACATGAACCTGTCTCCCGCGTCACGTGTCGAAGAGCGGAG
AGCGTTTGTTTGTGTGCTCGCGCTCTTCCGGTAGACCACGTGGTACGAGA
AATTCACTCCGCGGACGGCGTTCGGTAGGTCTTGATACAGAAGACCGGAT
TCACCGCTGCCCGGAATAGTCTCAACAAGCCCTGACTCGATCATTTTCGC
GTGGTTTCTCAGGAACCGGGCGAGTAGTGGCCCCAGTCTCCAGTCTTCTC
GTTCCCGAGATCGAACCCGTCATCGAAAATTCAAGCAAGATCACTCGAGG
AAGCGGTGCGGAGATGGCCTTGTCCAAGATAGGCATCCCGTGCCCCCCAG
ACAACACCGCCACGGTTGGTGGAAAACCCGTGCCATCGCTGGCGGAGGCT
CTTCGCAGTCGCATGGTAGCAGAACTTGGGGAAGCGGCGACACAGATTTT
TTAGTTTTGCCTTCCTTCTTGAATCAATCGCGAGATGCAAGTATCATTTT
GAACACCAAAATGTATCCGCTTTGTGATGTGTGTATGTGCCCGTTATCCA
TGCAGCTGTGGTTGGTCTCACACTCGTAGAATGCCGTGGGGTGAATCTCG
GATGATGAAACACGCTCAAGTGGTAAAGAGATAAGAAGTTGAAGTTCAAC
AAGAACACAGCCGGAACACTAAATTACAAGCATGAAGCAGCCGTGCGCAA
TGGTTGGTGGAATACCCATGTCCTCGGTGGCGGAGGCTCTTCGTAGTCGC
ATCATGGCAGAACTTGGGAAAGAGGCCACAACAGGCACCTGCTTCCTGAC
GTATCTCTGCGTCGTGTGTGCCCACTATGAAAGGAGTTGTGATATTGTGT
AAAACCCCAGGCAGACATCGCCGCCACACTCGCAGAATGCTGCAGAGTGA
ATCTCGGGAATATATCCGCACGCAAACTCAAGCTGACAAGTGAAATTCAA
CCGAGAACACGGTAGACGACCGCGAGAAAAAAAGCATGAAGCAACCGTGC
ACAAACGGTTAAGTGGAAAACCCATTCCATCGCTGGCGGATACTCTTCGT
AGTCGCACGGCGGCAAAACTTGGGAACGCGGCCACAACTGTTCTAGCTTA
ACTTTCCTTCCGGAATCAATCGCAGTAAGCCATGCCATGCCGAAGGCCAA
AATCCATACGCTTGGGGACGTATGTGTGTGCTCACAAATTCATGTAGTTG
TGGTTGGTGTTGGCGTTGTTAAAGTCACAAGCGGTCATGACCGTCACGCT
GCAGAGCGAATCTCGGGTGATGAAAGAAGAAAATGCGAACTTCAATTTAC
ACCGAGAACATATACAGACCACGAACAATTTAAAACATGAAGCAGCCGCG
TGCACAAAATCGACTCCACGTGGAGATGAGTCCTACAACTCGTGCACGCG
TTCCCCAATATCGGCCCCAGGCGTGCCTCAAACGTGTGTCTACCGTATTG
ACCAACAAGCCGCGCCGCCTACCCCGCGCTCCCCACAAAGACCCGCATAA
CAATTTTCGGATACTAGCGGGACAGTCAAACCCACCCCCGGAGTCCAGAA
GGAGACAGATATGCTTTCACACACCGCCCGTTGCAAGACTCCAACAACCA
AATCCGGACGACCTAGACGACCAAGCACATTTGTGCAAAGCAGGTTGATA
CCATGCAACAGCCCTAGGGCGGCGCCACCACCAAACGCTTGGGTACGACG
CCATCGGGGGGATAGAGGGCAAGAAACAATCGCCCCGTTCCATGAAGAGA
CTACTGCGTGAACTCACGAAGGTTCAAGAGGACAAAGACACTCGTGATGA
TCACCCAACATGAAGCAATACTCTTCAGATCAGGGAGACGAGCTTCGCCG
CGAAGGCTAGTACTAGAGTACTTCGAGTTGTTGTTCGTCATCCTAGGGTA
ACCAATCCCGCTTTTAAAGATCAGCGGACGTGCAATTCTGCGGTAACTCG
TCGGAGAATCAATTTTTGTGGCACGCATTCGTGCTTTAGTAAAACAACTG
AACCGAAGTAAAATTTCTACACATCGATGCAGCACCAAAGGTCATACCAT
ACACGCCGACATGTCGAACGCTCATTAAACACAGCGAGAGAAAACCCCGC
TGGCTACCATGCGCAGGAGAATAAAAACTAGCAAACCCACCGCAGTCGGC
ACTGCTCGGAAAAACCAACGTCTAACCCATTGCAGTTCTCTTCAACCAAG
AAAGAGCACATACTATTTTTTCCGGCGAGGGACATGAGGGCACGACGAGA
CGCGAAAAGATCAGTGCCGCCTGCGGTGTCTGTTTGAGGCGTCACACGCT
CTCCTCTAACCATTTCACTCTTCAGTAGCCTAATTACAGCAGCTTCCTTA
ACACCATCGCCAACAGCAGTGGATCAGACCTTCTTGCTGTCGAACACACT
AAAACATTTCCAGAGAATGTGAGAGCACGACGAGACGCGAAAAGAGACAC
GGCCGCCTACGATGTCTGTTAGAGGCGTCACACGCCACGCTCCCCTTTTG
CTCTCCAATAACCCAAGTGCAGCAGCTCCCCCAACAGCAGTGCATCAGTA
CCCCTTCTCGTCGGAAGTCTCGTCGCTGTCATCGTCGTCAACGTCGGGTG
CGAACTTTTCCTCCTCCCCTGCCACCCCCTCCTCCTCGCTCCCGCCGGCG
TCTGCGCCCATCTCTCTTCCTGCATCGTCGTCGCCGCCGCCATCTCCCCG
CGGTATTCGTCTCACCTCCGACGCGGATGCACCCTCTCCGTCTCCGAGAA
GTCCTCCGTCGCCAGCCCCGGCGCCCGCAACGCTTGCCATAGAGGAGTGG
TGCGCGGCGGCGATGTCCGCGAGCTGGTCAACGGCGTAGCTCCCGCTCCT
CGCGTGCCGCTGGTTCTGGTCTTCTCGGTCGTCTGAAGAACCCTCTTCTC
CGTGATTGATCCACCGCAACACATCGAAGCATAAGCATGTACATATCGCT
GGATGAGATGAGTCAAACAAGCGCAGACAAGCATGCGCACAACGCAAGGC
TTCGCGACAAAACAAGCAAGAATGGGGGCCACAGCAGGGAACGAACGCAA
TACGCGCATGTTTCGCAATCGTGATCGTGGTAGAGGTGGATGGTTTCGAG
AGCAACTCCAGCTTTCTCCCTTCAAGTCCCACGCGAGTGCGGCATCCACT
TGAACGCGGCTGCGGACGGCGCTCAGAAATTGTGGCACGAACTGTGCTCG
AGTCAGAGTTACCAGTGGTGTACTGAACACTATGAATATAAGTTCCGGGA
AGCCGTAGAAGTTGTGCCGCTCGCTCACCACCATCACCCCCTCCCTGCAC
CCGGGCCTTCTTGTCCGCGGGCGCCCCTAAGTTGTCTCGTTCTGACGAGA
GCGGCCGCTCTTCCACTCCGACATCAGGCCCTTCGTCCCTCGGGCGTTTT
TTACCACCATCCTGCTCCTTACCAACGGGCTGCTTGGAGGGGGGAGACGC
GAAGCGAAACACAGAGCATGTGGGGCGGGCTTTGCGTAGTTCGGGTTTAG
GGTTACAACAGAGAGACGTGTGGGATGGACGGGGTGGTCCTGAAATTTTG
GTGGAGGGTGTGCAGTTGGAAACTATGTTCGACGTGTGCTGTCGAAATGG
AGGACTCGTTCCTGCGAGTGTCCAACGTTTTCGCAAAACCTTTAGCTGGA
AATAGAGATCAATACTTTGGTGGGTGCCGTGAAGGTGTGAAACAGTGTGA
CCCGTCCGTGAAACAGAATCCGAACAAACCTGCTGAGGTACGTATGAAAG
AGTGTGACCAATCCGTTCGTCTGGATGTGCGGGGGTGGGGAGGGAACGGA
ATCCGAACAAACGTGCCCGAGGTACGTGTGAAACAGTGTGACCAGGTCCG
TTTGTCTGGGTGAGCGGGGGTACGGCATCTGGAGCGTAAGAGGTACATTC
ATAGGTTCTGCTCTCACCGCCGCATCCTCCAGCTTGCTCATCTGCTGCTC
CAGCTCTGACACCGTGAGCAGCTCGGTTTCTTGCT
back to top

Coding sequence (CDS) from alignment at chr_28:1351610..1358744-

>Ec-28_001430.3 ID=Ec-28_001430.3|Name=Ec-28_001430.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=672bp|location=Sequence derived from alignment at chr_28:1351610..1358744- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCCAGCACGACCGCAACAAGCGTGTGGGCGACATGCGGCGAGCCCGA
GGTCCGTCGATGTCCTGCAGGAGGCCCTCTTTCTTCACCGCAAGAGTTTC
TTCTTGCCAATCCTCCAGGCCCGTACACGTGCCTGAGGACGGTCGACCAT
CGGTCGGTGGCCATGCTGCCGTTTCATCTGGACAGGCTCTGGCAGTCTTC
TCAAGCCACCGGTTTTGGACCCGCGGCTAGGGCGCAAGGTCGGCAATCGC
TGGAACAGGAGACGGTGGAGACCATCGCTCGGGTGACCGAATCGTTTCGA
GAAGAGAACGCTGGCGGCGGCTGCCCAGAGTGCATGACGACAGTCTTGTA
CACGCACCGCCGCAGGCTTGGCAAAGAAGACGCAGGCGAGGGCTTGTCAG
ACGATGACCAACCCGGAGGAACGACAGCCTTCACGGGTACCAGAACGTCG
AAACGTCCACGAAAAGGGGCAGCCAGACCGACGAAAGACCGTGAAATATG
CATTATGGCGCATGCCTGGCCTTTGCCCACGCCCCCGGTGGATGGAAGGC
CCGCGGGAGTGAAGGTGCTCATTGCCGGATCGGGGAGATCGTTGCCAAAA
GCGAAGCACTCGAGCTGGTTGCGAGATAGGAAACGACTGGAAGAGCTCAA
AGCTCAGGTGCACAGGAGGTAG
back to top
Synonyms
The feature 'Ec-28_001430.3' has the following synonyms
Synonym
Esi0181_0057
Esi_0181_0057