Ec-28_001110.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_001110.1
Unique NameEc-28_001110.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length374
Homology
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BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.120e-131
Identity = 281/348 (80.75%), Postives = 286/348 (82.18%), Query Frame = 2 
Query:  143 LTAPVMPTTRQHSYRQQQRQRRNLLAENAIDGGRETAGSRRASSFRGGGDGGATFSGVDQGTSDENAAEPALVAPPXXXXXXXXXXXXXXXXXXXXXXXXXXX----GPAASFSVPGFFTPRRSLTRRRAPLSPALSASPPAEARSLRSASASSIAGTPRRLSRGFRSASARGDSQLQVVMCSSCGRAGFIQSSEALSSRSAFFCSCGSPVVPASALQLLTATPGETSMSSVAQHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSHVTCCGSSSSXXXXXXXXXXXSTFSRG 1174
            LTA VM  TR +SYRQ     RNLLAEN  DGGRETAG                                      XXXXXXXXXXXXXXXXXXXXXXXXXXX    GPAASFS PGF TPRRSLTRRR PLSPALSASPPAEARSLRSASASSIAGTPRRLSRGFRSASARGDSQLQVVMCSSCGRAGFIQSSEAL+SRS+FFCSCGSPVVPASALQLLTA PG  SMSSV+QHTGASPQLVERLPTMQY E+SRKVL AEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHR CIDEWLGRSVLCPLCNTSVEVAEDSHVTCCGSSSSXXXXXXXXXXXSTFSRG
Sbjct:  656 LTASVMTATRHYSYRQXXXXXRNLLAENTADGGRETAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAASFSFPGFLTPRRSLTRRRTPLSPALSASPPAEARSLRSASASSIAGTPRRLSRGFRSASARGDSQLQVVMCSSCGRAGFIQSSEALASRSSFFCSCGSPVVPASALQLLTAMPGGISMSSVSQHTGASPQLVERLPTMQYQESSRKVLVAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVAEDSHVTCCGSSSSXXXXXXXXXXXSTFSRG 1003
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BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.610e-35
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 2 
Query:  641 ARGDSQLQVVMCSSCGRAGFIQSSEALSSRSAFFCSCGSPVV---PASALQLLTATPGETSMSSVAQHTGASPQLVERLPTMQYHENSRKVLAAEHG---EEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSH 1096
            A   + +QVVMC++CGR G +      S+ + F C CG+PV+   P   L L+T   G  ++  V  H GAS +LV  LPT+ +  + +    A+     ++DKVSCRVCLS+Y+ G+ LR+LPC HKFH+ CIDEWL RSV CPLCNTSV+ A   H
Sbjct:   37 AMNSTSVQVVMCTNCGRVGMLPHQ---STTAVFLCPCGTPVLAATPGQLLTLITRGGGLGALEGVHHHQGASKELVALLPTVTHRGDCKAAATAQEAFGEDDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKALQQH 191
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BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A835ZD21_9STRA (FAD dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-16
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:  908 AAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWL-GRSVLCPLCNTSVEVAEDSH--VTCCGSS 1117
            A E  +EDK+SCRVCL +YEAGD LRILPCLH++H  C+DEWL  RS  CPLCNTSV V    H  + C GS+
Sbjct:  259 AREEVDEDKISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVVLHGHPGLRCTGSA 331
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BLAST of Ec-28_001110.1 vs. uniprot
Match: D7FJG1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.900e-14
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 2 
Query:  830 QHTGASPQLVERLPTMQYHE-------------NSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVA 1084
            Q  G   +LVERLP     E             N  +   AE  ++D ++CR+CLSDY+ GD +RILPC H+FH   ID+WL R+V CPLC+  +  A
Sbjct:   75 QGCGLPRELVERLPVTVVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKA 172
[Close]
BLAST of Ec-28_001110.1 vs. uniprot
Match: L8HAL1_ACACA (Zinc finger (C3HC4type RING finger) family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HAL1_ACACA)

HSP 1 Score: 77.4 bits (189), Expect = 4.910e-14
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 2 
Query:  815 MSSVAQHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDK--VSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSH 1096
            M SVA     S   V++LPT  +     +    E GE D+   +C +CL +YE G+ L+ LPCLH +H+ECIDEWL  + LCP+C   V  A  ++
Sbjct:    1 MGSVA--IAPSAVTVDQLPTHPFSSAQLRRTGGEGGELDEQLTTCTICLVEYEDGELLKTLPCLHSYHQECIDEWLSGNKLCPICKFDVTTAPSTY 94
[Close]
BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A7S0QVM1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVM1_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 4.790e-13
Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 2 
Query:  845 SPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLC 1063
            +P  V+ +P ++Y         AE GEE    C +CL D+  GD LR LPC H FH  CIDEWLGR  +CP+C
Sbjct:   45 TPSEVKAIPVVEYE-------GAEEGEEGAELCTICLDDFAKGDQLRRLPCRHHFHVTCIDEWLGRRSMCPVC 110
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BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A7S2UST6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UST6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.490e-13
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 2 
Query:  830 QHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSH 1096
            +H GAS ++++++P   +H +  +  A+     DK  C +CL +++ GD +R L CLH+FH++CID WLG    CP+C   +    +SH
Sbjct:  341 EHRGASQEVIDQIPLQTFHNDDDEKNAS----NDKPVCNICLEEFQTGDEIRKLSCLHRFHKQCIDRWLGTVASCPICKHEIGRNVESH 425
[Close]
BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A2L2Y4S9_PARTP (RING finger protein 38 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2Y4S9_PARTP)

HSP 1 Score: 74.7 bits (182), Expect = 5.940e-13
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  839 GASPQLVERLPTMQY-----HENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEV 1081
            G     + RLPT QY     +  S   L  +    +K  C+VCLSDYE GDTLRILPC H+FH  CID WL  +  CP+C   V++
Sbjct:   19 GLQKSEINRLPTRQYIAANNNAGSSNELPHKRAGLNK-ECQVCLSDYENGDTLRILPCFHEFHTPCIDPWLKINHTCPVCRVVVDL 103
[Close]
BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A7J7PSY4_9CHLO (RING-type domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PSY4_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 6.400e-13
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:  821 SVAQHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEV 1081
            +V    GA+   ++ LPT           A E     K+SC VCL ++  G  LR LPCLHKFH+ CID WLG+   CP+CN  V++
Sbjct:   38 TVENRKGAAAGTIDSLPTQAVPPGGLLGAAGE-----KLSCAVCLEEFVEGAELRALPCLHKFHKGCIDRWLGQKACCPVCNREVKL 119
[Close]
BLAST of Ec-28_001110.1 vs. uniprot
Match: A0A072VSZ0_MEDTR (C3HC4-type RING zinc finger protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VSZ0_MEDTR)

HSP 1 Score: 80.9 bits (198), Expect = 8.870e-13
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:  830 QHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSV 1075
            QHTGAS  L+ RLP        +  +  ++  ED   C VCL     GDT+R LPCLHKFH++CID WLGR   CP+C +S+
Sbjct:  657 QHTGASTNLINRLP--------QSTVQTDNYTED---CAVCLETPVKGDTIRHLPCLHKFHKDCIDPWLGRKSSCPVCKSSI 727
The following BLAST results are available for this feature:
BLAST of Ec-28_001110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI9_9PHAE1.120e-13180.75RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2Y0A3_9STRA1.610e-3546.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZD21_9STRA1.170e-1661.64FAD dependent oxidoreductase-domain-containing pro... [more]
D7FJG1_ECTSI1.900e-1441.84RING-type domain-containing protein n=2 Tax=Ectoca... [more]
L8HAL1_ACACA4.910e-1440.63Zinc finger (C3HC4type RING finger) family protein... [more]
A0A7S0QVM1_9CHLO4.790e-1346.58Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A7S2UST6_9STRA5.490e-1335.96Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A2L2Y4S9_PARTP5.940e-1345.35RING finger protein 38 (Fragment) n=2 Tax=Parastea... [more]
A0A7J7PSY4_9CHLO6.400e-1341.38RING-type domain-containing protein n=1 Tax=Scened... [more]
A0A072VSZ0_MEDTR8.870e-1347.56C3HC4-type RING zinc finger protein n=2 Tax=Medica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:1069902..1074350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog2880.D7FJG1
Length1178
KEGG koko:K11982
Hectar predicted targeting categoryother localisation
Gene idEc-28_001110.1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_001110Ec-28_001110Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 1068213..1074444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001110.1Ec-28_001110.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 1069902..1074294 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001110.1.5Ec-28_001110.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1069902..1070072 -
Ec-28_001110.1.4Ec-28_001110.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1070924..1070995 -
Ec-28_001110.1.3Ec-28_001110.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1071489..1071569 -
Ec-28_001110.1.2Ec-28_001110.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1072263..1072451 -
Ec-28_001110.1.1Ec-28_001110.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 1073686..1074350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_001110.1CDS:Ec-28_001110.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 1069902..1070072 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_0011105UTR:Ec-28_001110.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_28 1074295..1074350 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_001110.1 ID=Ec-28_001110.1|Name=Ec-28_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=374bp
MPLSWPLPSESPSSGAGGGDGGGAPAVATLTAPVMPTTRQHSYRQQQRQR
RNLLAENAIDGGRETAGSRRASSFRGGGDGGATFSGVDQGTSDENAAEPA
LVAPPSPPPRPSHAGGGGGGQGAAAAAAAAAAGPAASFSVPGFFTPRRSL
TRRRAPLSPALSASPPAEARSLRSASASSIAGTPRRLSRGFRSASARGDS
QLQVVMCSSCGRAGFIQSSEALSSRSAFFCSCGSPVVPASALQLLTATPG
ETSMSSVAQHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCL
SDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSHVTC
CGSSSSSETSETSASAASTFSRG*
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spliced messenger RNA

>Ec-28_001110.1 ID=Ec-28_001110.1|Name=Ec-28_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1178bp|location=Sequence derived from alignment at chr_28:1069902..1074350- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACCACCACCACCACCACCACTACCAGCAGCATCGCCGGTGCGAGCGCGGC
GGAGAGATGCCGCTTTCGTGGCCCCTGCCGTCTGAGTCTCCGTCTTCTGG
TGCAGGCGGCGGCGACGGCGGCGGCGCTCCGGCGGTAGCCACTCTCACCG
CTCCCGTCATGCCGACGACGCGGCAACACTCCTACCGGCAACAGCAACGA
CAGCGACGGAACCTGCTGGCCGAAAACGCCATCGATGGGGGGCGTGAGAC
GGCAGGAAGCCGAAGAGCTTCCTCCTTCCGCGGCGGCGGCGACGGCGGAG
CAACGTTTAGCGGCGTCGACCAAGGCACCTCCGACGAAAACGCGGCCGAA
CCGGCGCTGGTTGCTCCGCCTTCGCCGCCACCGCGGCCTAGTCACGCCGG
CGGCGGCGGGGGAGGGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGGTCCGGCGGCTAGTTTTTCCGTTCCGGGTTTTTTCACGCCGAGGCGT
TCGTTGACCAGGAGGAGGGCCCCGCTCTCCCCCGCTTTGTCGGCGAGTCC
GCCGGCGGAAGCCCGAAGCTTGCGGTCGGCATCCGCGTCGTCGATCGCGG
GCACGCCGAGGAGACTTTCGAGGGGCTTTCGTTCGGCTTCGGCGCGTGGG
GATAGCCAGCTTCAGGTGGTGATGTGCTCCAGCTGCGGCCGCGCGGGTTT
CATCCAGTCTTCGGAGGCGCTGTCCAGCCGATCGGCCTTCTTTTGCAGCT
GCGGCAGCCCGGTCGTCCCCGCCTCGGCGTTGCAGCTCCTGACGGCGACG
CCGGGAGAAACTTCGATGTCTTCGGTCGCTCAGCACACGGGGGCGTCTCC
GCAGCTCGTCGAGCGCCTTCCCACGATGCAGTACCATGAAAACTCTCGGA
AAGTTCTAGCGGCGGAGCACGGCGAGGAAGATAAGGTGTCCTGCCGGGTG
TGTCTGAGCGACTACGAGGCAGGGGACACGCTTCGCATCCTCCCTTGCCT
GCATAAGTTTCACCGGGAGTGCATCGACGAGTGGCTCGGTAGGTCGGTGC
TGTGCCCGCTCTGCAACACCTCGGTCGAAGTGGCAGAAGACTCGCACGTG
ACCTGCTGCGGATCGTCGTCGTCGTCGGAAACGTCGGAGACGTCGGCATC
AGCAGCTTCAACCTTCTCGAGGGGCTAA
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protein sequence of Ec-28_001110.1

>Ec-28_001110.1 ID=Ec-28_001110.1|Name=Ec-28_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=374bp
MPLSWPLPSESPSSGAGGGDGGGAPAVATLTAPVMPTTRQHSYRQQQRQR
RNLLAENAIDGGRETAGSRRASSFRGGGDGGATFSGVDQGTSDENAAEPA
LVAPPSPPPRPSHAGGGGGGQGAAAAAAAAAAGPAASFSVPGFFTPRRSL
TRRRAPLSPALSASPPAEARSLRSASASSIAGTPRRLSRGFRSASARGDS
QLQVVMCSSCGRAGFIQSSEALSSRSAFFCSCGSPVVPASALQLLTATPG
ETSMSSVAQHTGASPQLVERLPTMQYHENSRKVLAAEHGEEDKVSCRVCL
SDYEAGDTLRILPCLHKFHRECIDEWLGRSVLCPLCNTSVEVAEDSHVTC
CGSSSSSETSETSASAASTFSRG*
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mRNA from alignment at chr_28:1069902..1074350-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_001110.1 ID=Ec-28_001110.1|Name=Ec-28_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4449bp|location=Sequence derived from alignment at chr_28:1069902..1074350- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACCACCACCACCACCACCACTACCAGCAGCATCGCCGGTGCGAGCGCGGC
GGAGAGATGCCGCTTTCGTGGCCCCTGCCGTCTGAGTCTCCGTCTTCTGG
TGCAGGCGGCGGCGACGGCGGCGGCGCTCCGGCGGTAGCCACTCTCACCG
CTCCCGTCATGCCGACGACGCGGCAACACTCCTACCGGCAACAGCAACGA
CAGCGACGGAACCTGCTGGCCGAAAACGCCATCGATGGGGGGCGTGAGAC
GGCAGGAAGCCGAAGAGCTTCCTCCTTCCGCGGCGGCGGCGACGGCGGAG
CAACGTTTAGCGGCGTCGACCAAGGCACCTCCGACGAAAACGCGGCCGAA
CCGGCGCTGGTTGCTCCGCCTTCGCCGCCACCGCGGCCTAGTCACGCCGG
CGGCGGCGGGGGAGGGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGGTCCGGCGGCTAGTTTTTCCGTTCCGGGTTTTTTCACGCCGAGGCGT
TCGTTGACCAGGAGGAGGGCCCCGCTCTCCCCCGCTTTGTCGGCGAGTCC
GCCGGCGGAAGCCCGAAGCTTGCGGTCGGCATCCGCGTCGTCGATCGCGG
GCACGCCGAGGAGACTTTCGAGGGGCTTTCGTTCGGCTTCGGCGCGTGGG
GATAGCCAGCTTCAGGTCGGTGTGTGTGTGTCTTTTATGTGTTTTGTGTG
TGTTTTTTCTCGCTATGAAACGGACGAACTCGCAGTCTTCTTCCGACTGG
TGCTCGAGGGGACTACTGACTGTTGCTGGTGCTGCTGGTGCTGCTGGTGC
TGCAATTGTTGTTGTCGCTGCTGTCGTTGTTTTTGTTGATGGCGGTGTTA
TCACCGGGGAGGTAGATATTGTCCGCCCCCCCGTTATACGGTTTGCGTTT
GTTCCTTGTACTGTTTTTCTTGCTTGTAACAACACAACGAGTTATCCCTA
TGCAGTTCAAGATAGATTAGCAATGAAATTATTCACGATGTTGCATTGAA
CACAAGCCGGTCGCCCCGGTGGTCTAGTGGGTAGCCTCGTAACCTTCTAG
AGGTCAGGTCAGGGGTTCGAATCCCGGCGTAGGCCAGCTTTTCTTGCAAA
GTGAGTTTTTTCTCTCGCTTCCGCTCCTGGCCAAGTGGATAGCGCTAGTT
CGTGTGTACACAGAGGGAAGAGAGTGCTGAACTCTTCTCGCATTAAAAAT
TGAAGACGAAGTACCGCAGGAGGGGAGGGTAGAGAGAGGCTCTTCTGTGT
GACCACGGGTTGGAATAAACGGAACTAGTGCTGTGAGCGCTGATTTGAAG
TGAAGAACAAAAAAAAAAAAAAATGCCTACCCTTGTTTACTATTATAGTC
TCCACCTTGATTATGTCGTTTCGTCCAAACGGGCGCGAGTGCTTCGCCAC
GATGTACCACCCCCCTACGCGATAACTCTTCTCGAGCGGTTTCCATGTGA
CGTTACAAATAGTTTTTGCTCCGAGAGAAAAAGTACCAGAATGCATGCAT
ACCCGTGTATCACGCACACAGTTTCCCCCCCTGTTTTTGGGAGAAAATAG
TCGCATGTCTCGGATGATGTCGTGTACACACAAAGCCCGGACATTCTTCT
CAGTGTTAGCCCCTAGTCCCCCCCCAACGTGCACGAGTTGCGCCCGCTTG
GAGGTGGTTGCCGTGCGTTGTGACGGCCGGAGACATCTCGTGGCGCGTCC
GTCTCCCAGTCCGATTCTTGGCATGCCTCGTCCTCGGACCACACTTTGCC
CCTGTCCGACACAGCAGCAGTATGGCCCGGACACGGATTAGAAGTGGGCT
TAGGGCTGAGCAACTGACAAGAATCTCATCGGCGCCGCCTTCTTGTGCTC
CCGCCGTTTTTTGTACTTGTACATTTTTTTTTTTTGGCGAATGCCGAAGG
TGGTGATGTGCTCCAGCTGCGGCCGCGCGGGTTTCATCCAGTCTTCGGAG
GCGCTGTCCAGCCGATCGGCCTTCTTTTGCAGCTGCGGCAGCCCGGTCGT
CCCCGCCTCGGCGTTGCAGCTCCTGACGGCGACGCCGGGAGAAACTTCGA
TGTCTTCGGTCGCTCAGCACACGGGGGCGTCTCCGCAGGTAGGTTCGTCT
ACTCGTTGTGTGGGGGGAGGGGGCATACTCATCAGGAAGTTTGCATACAA
TCAAAGAGAGACTGACTACCCGTTCGAGATATACTCGCGTTATGGTATGC
CTCTGCGGTTAAACCGTCCGTTGACCACGCGTCCTCGAGCATTGTTCCCA
CAGGACTGATGGCCAATCGTTCCTTCCCACACTTTGCCTGCCAGAGGTTG
TTTGGGAGATATCCGTTCTTGAACACGGTGCGTTCCTCCCGTCGTGGTCA
TATACCGGTAGCCTCTGCAGCAGGGTCATTCCGACAACGTGGGGGAAAGG
GACTTACGTATGGGTTCTGGCGCCGATGTTTTCTTGTTCTTTCCGGCAAA
CCCATATGTCTACGTAGCAGAATGCAGCAGTAGAGCTCACCCCAGACCAC
AAGCTTTTCGTGTCTGATCACTGGGTGCTCCTGTTGCGGTGCGTCTCCCC
CCCCTTGCTCCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTTTTCTCTCTGTGTCTGTTCTCTTCATGCTCTGTCTGTCTGTTTGCCTG
CCTGTCTGGTCTCATCCCTTGTTTTCCTTTTCCGTCGCTGTGTTTCTTTT
TGGCGGTGTGGTGGGTACACGCGTGACATGCCACCGATAATGCCACGTAT
TGTCGTTTTTTTCAATGTCACCGAAAAGCAGCTCGTCGAGCGCCTTCCCA
CGATGCAGTACCATGAAAACTCTCGGAAAGTTCTAGCGGCGGAGCACGGC
GAGGAAGATAAGGTGGGAGACATGTCACTGCAGTACAGAAACACCTTCCT
CCGGAGGGAGCCTTCCATCAAAATGCGTGCAATGATCTTTCGGCCATGGA
TACCCTCGTCCACAACCAAATACCTTCAGTTTCTTCCGAGTTGGTGCACT
GTGAGAACGCAGGCTCCTAAGTGTGCCGAGAGTGAAATGAATTGTGAGAA
AGGCGAAGGTGGAGGGCGGAGTCTAGGGCACCGCACATCATTTTCGTGTT
CGACAACCCCGCAATGTGGGTATCAAGAGATGGAAGGCGGCCTATGTGCG
TCTTCAACGCTTTTTCCTCTCGCGCCTCCATTGGTTGGTGGTGGCGCGAT
ACCACAAAGGTTTTAGAGACACGCCTATGTTAGGGCTGTTATCCAAGGTT
CTTGGTACCAACAATGATATGCCCGAGACCATTGACCTGTGCACACGACG
ATCATATCACCCCCTCGTACTGGTGCCAATGTGTGGGGCGTGTCGCTGCC
CCCAGGTGTCCTGCCGGGTGTGTCTGAGCGACTACGAGGCAGGGGACACG
CTTCGCATCCTCCCTTGCCTGCATAAGGTAACAGTCTTGGTTGTCGTTGT
CATAAAACACAGCGGCGAATTGTTCTGCTTTGTTTTAGCCATTCGCATCT
TCTCTTGCCTGCATAGGTATTAGTCTTGGCTGTTTGCTGCTGTCATGAAA
CACGTGCTGTAAAAAGCAAATTGTGAAAAACAAATGGGCGAGTGATATCC
TCCCTTGCCTGCATCAAAAGGTTGGTCTTGATTGTTGCTGTTATGAAGCA
CAACTGCACTTTTCAACCATCGTACCAAAGAGGGGTGCGATCTCCTCTCA
TTCAAAGCACGGCGGTGTAAATAACAGTTGAATCGACCCATTCTATCCGT
ACTGGTTTGACTGCCACATACCATGACGAATCAATTGCTTGATTCCAAGA
GGGAACGATATTGCTAGAACCGCTGAGCGATGCTCACGACGAAGGAACGT
GTATATGCATAGCAAGGTAGACATCAATAAGCGGGTACACAGTGCAACAT
AACCAAGCAAGGCGTTGAACGTCGTGCTTTTCTCTTTTTTGGGTCCACGG
CGGCCAGTGTATCGTGCATCGTGCTTGTAAATGCTGCTCGTATCTGTGAA
AAGTTTCAGACGCTTGGTCTGAGCCTGTGGTTAACATCCGGATTCCTGGC
AGTGAATGAATTCACTTTTCGATGGCCACAGCATCATGTGCAACACACCC
GGGTTATTTGGCGCCCGTGTGTTGTACCCGTACACGAATCTCCCATTGTC
CTCCCCCACCCTTTCAGGCCTCTCCTGTAAAACCTGTGGCAATGATAGCC
GCATAAGGGTTTTGTCAACGAATGCGCGCGCTCTCGTCCCGTCTCTGTGC
CTGTCTTTCTTTTTTTTTTTGCCGTTAGTTTCACCGGGAGTGCATCGACG
AGTGGCTCGGTAGGTCGGTGCTGTGCCCGCTCTGCAACACCTCGGTCGAA
GTGGCAGAAGACTCGCACGTGACCTGCTGCGGATCGTCGTCGTCGTCGGA
AACGTCGGAGACGTCGGCATCAGCAGCTTCAACCTTCTCGAGGGGCTAA
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Coding sequence (CDS) from alignment at chr_28:1069902..1074350-

>Ec-28_001110.1 ID=Ec-28_001110.1|Name=Ec-28_001110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1122bp|location=Sequence derived from alignment at chr_28:1069902..1074350- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGCTTTCGTGGCCCCTGCCGTCTGAGTCTCCGTCTTCTGGTGCAGG
CGGCGGCGACGGCGGCGGCGCTCCGGCGGTAGCCACTCTCACCGCTCCCG
TCATGCCGACGACGCGGCAACACTCCTACCGGCAACAGCAACGACAGCGA
CGGAACCTGCTGGCCGAAAACGCCATCGATGGGGGGCGTGAGACGGCAGG
AAGCCGAAGAGCTTCCTCCTTCCGCGGCGGCGGCGACGGCGGAGCAACGT
TTAGCGGCGTCGACCAAGGCACCTCCGACGAAAACGCGGCCGAACCGGCG
CTGGTTGCTCCGCCTTCGCCGCCACCGCGGCCTAGTCACGCCGGCGGCGG
CGGGGGAGGGCAGGGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTC
CGGCGGCTAGTTTTTCCGTTCCGGGTTTTTTCACGCCGAGGCGTTCGTTG
ACCAGGAGGAGGGCCCCGCTCTCCCCCGCTTTGTCGGCGAGTCCGCCGGC
GGAAGCCCGAAGCTTGCGGTCGGCATCCGCGTCGTCGATCGCGGGCACGC
CGAGGAGACTTTCGAGGGGCTTTCGTTCGGCTTCGGCGCGTGGGGATAGC
CAGCTTCAGGTGGTGATGTGCTCCAGCTGCGGCCGCGCGGGTTTCATCCA
GTCTTCGGAGGCGCTGTCCAGCCGATCGGCCTTCTTTTGCAGCTGCGGCA
GCCCGGTCGTCCCCGCCTCGGCGTTGCAGCTCCTGACGGCGACGCCGGGA
GAAACTTCGATGTCTTCGGTCGCTCAGCACACGGGGGCGTCTCCGCAGCT
CGTCGAGCGCCTTCCCACGATGCAGTACCATGAAAACTCTCGGAAAGTTC
TAGCGGCGGAGCACGGCGAGGAAGATAAGGTGTCCTGCCGGGTGTGTCTG
AGCGACTACGAGGCAGGGGACACGCTTCGCATCCTCCCTTGCCTGCATAA
GTTTCACCGGGAGTGCATCGACGAGTGGCTCGGTAGGTCGGTGCTGTGCC
CGCTCTGCAACACCTCGGTCGAAGTGGCAGAAGACTCGCACGTGACCTGC
TGCGGATCGTCGTCGTCGTCGGAAACGTCGGAGACGTCGGCATCAGCAGC
TTCAACCTTCTCGAGGGGCTAA
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Synonyms
The feature 'Ec-28_001110.1' has the following synonyms
Synonym
Esi181_0084
Esi_181_0084