Ec-00_006360.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006360.2
Unique NameEc-00_006360.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length104
Homology
[Close]
BLAST of Ec-00_006360.2 vs. uniprot
Match: D7G338_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G338_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 9.720e-33
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 MGQSQPPASRWGRYGVPFQTNWHTAVDCLVIISGIYSSIVFSHHQRTHMSKSLTRTT 171
            MGQSQPPASRWGRYGVPFQTNWHTAVDCLVIISGIYSSIVFSHHQRTHMSKSLTRTT
Sbjct:    1 MGQSQPPASRWGRYGVPFQTNWHTAVDCLVIISGIYSSIVFSHHQRTHMSKSLTRTT 57
The following BLAST results are available for this feature:
BLAST of Ec-00_006360.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G338_ECTSI9.720e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10053038..10054206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length951
Hectar predicted targeting categoryother localisation
Gene idEc-00_006360.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006360Ec-00_006360Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10053038..10054206 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006360.2.2Ec-00_006360.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10053038..10053061 -
Ec-00_006360.2.1Ec-00_006360.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10053280..10054206 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0063603UTR:Ec-00_006360.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 10053038..10053061 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006360.2CDS:Ec-00_006360.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10053597..10053908 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0063605UTR:Ec-00_006360.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 10053909..10054206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006360.2Ec-00_006360.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10053597..10053908 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006360.2 ID=Ec-00_006360.2|Name=Ec-00_006360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=104bp
MSLSRTSQRNKHENAYTFLNPKHTIETHIRLVYLQKTLKGKFTLSRPGGR
TEALLHQYHPRAACCFKTRTCDPSLDVPHNNQKCHPPSCLSRTKPPNNST
LWW*
back to top

spliced messenger RNA

>Ec-00_006360.2 ID=Ec-00_006360.2|Name=Ec-00_006360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=951bp|location=Sequence derived from alignment at chr_00:10053038..10054206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAATCGCAGCCGCCTGCTTCACGTTGGGGCCGCTACGGTGTGCC
ATTCCAGACAAATTGGCACACTGCTGTTGATTGTTTGGTCATTATCAGCG
GGATTTATTCATCCATCGTGTTCTCCCATCATCAACGCACGCACATGTCC
AAGTCCCTTACCCGAACGACGTAGCGAGACATCGTAATCCTACTGTAGTC
TTTTGTATGGCGTTTGGACGCCTCAAGCTCGAAGATTGTCCGGTGGGTCT
CGACGTTGGCAACTACGAAAAAAAAGAAAACTTGATTACAGTAGTCCGAT
GTCTCTATCGAGGACATCGCAACGAAACAAACACGAAAACGCCTACACGT
TCTTGAACCCCAAGCACACAATTGAAACCCACATACGTCTTGTGTACTTG
CAAAAGACCCTGAAAGGGAAGTTTACCTTGTCAAGACCAGGTGGTCGCAC
GGAAGCTCTATTGCATCAGTATCACCCAAGGGCGGCCTGCTGCTTCAAAA
CACGTACGTGTGACCCATCTCTCGACGTCCCGCACAACAACCAAAAATGC
CATCCGCCTTCCTGCTTATCACGAACCAAACCACCCAACAATTCCACACT
GTGGTGGTGAAAGGAAACTGCGGTACTACTGTACCATCAAACCCGAAAAC
AAGAGACAACACCGACAACCAGAATACGTCACGACATTGCAATAATAGTA
CACTACAATACTGAGCCTGGACACACCACGATCCTCGCATACGGAGACGA
CAACATTTACGAAGCAAGGGACAAACAATGTGTTAACAAACTTACAGAAC
ACCGCTTGTTTCGACCATTTCGGTTTTGAACGCTAAAACCGGTAGCGAGC
GCGTCCATAGCGGTTGGGGTAGTTGCTCTACAGCTTGCGCCCTTGGCAGC
CGCTTCACATCAAGCCACAAGTCAACATACAACGAAAGGAACCCTAATCC
C
back to top

protein sequence of Ec-00_006360.2

>Ec-00_006360.2 ID=Ec-00_006360.2|Name=Ec-00_006360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=104bp
MSLSRTSQRNKHENAYTFLNPKHTIETHIRLVYLQKTLKGKFTLSRPGGR
TEALLHQYHPRAACCFKTRTCDPSLDVPHNNQKCHPPSCLSRTKPPNNST
LWW*
back to top

mRNA from alignment at chr_00:10053038..10054206-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006360.2 ID=Ec-00_006360.2|Name=Ec-00_006360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1169bp|location=Sequence derived from alignment at chr_00:10053038..10054206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGACAATCGCAGCCGCCTGCTTCACGTTGGGGCCGCTACGGTGTGCC
ATTCCAGACAAATTGGCACACTGCTGTTGATTGTTTGGTCATTATCAGCG
GGATTTATTCATCCATCGTGTTCTCCCATCATCAACGCACGCACATGTCC
AAGTCCCTTACCCGAACGACGTAGCGAGACATCGTAATCCTACTGTAGTC
TTTTGTATGGCGTTTGGACGCCTCAAGCTCGAAGATTGTCCGGTGGGTCT
CGACGTTGGCAACTACGAAAAAAAAGAAAACTTGATTACAGTAGTCCGAT
GTCTCTATCGAGGACATCGCAACGAAACAAACACGAAAACGCCTACACGT
TCTTGAACCCCAAGCACACAATTGAAACCCACATACGTCTTGTGTACTTG
CAAAAGACCCTGAAAGGGAAGTTTACCTTGTCAAGACCAGGTGGTCGCAC
GGAAGCTCTATTGCATCAGTATCACCCAAGGGCGGCCTGCTGCTTCAAAA
CACGTACGTGTGACCCATCTCTCGACGTCCCGCACAACAACCAAAAATGC
CATCCGCCTTCCTGCTTATCACGAACCAAACCACCCAACAATTCCACACT
GTGGTGGTGAAAGGAAACTGCGGTACTACTGTACCATCAAACCCGAAAAC
AAGAGACAACACCGACAACCAGAATACGTCACGACATTGCAATAATAGTA
CACTACAATACTGAGCCTGGACACACCACGATCCTCGCATACGGAGACGA
CAACATTTACGAAGCAAGGGACAAACAATGTGTTAACAAACTTACAGAAC
ACCGCTTGTTTCGACCATTTCGGTTTTGAACGCTAAAACCGGTAGCGAGC
GCGTCCATAGCGGTTGGGGTAGTTGCTCTACAGCTTGCGCCCTTGGCAGC
CGCTTCACATCAAGCCACAAGTCAACAGTAAGTCGCGCCTGTCTTCGTTT
CTACAGTACGGGACATGCACACCACGCGTTAAATATCAACTCACAACACA
ACGACCACCACCAACAATCACGAGGGCGATGCAATTCTACAGTAGATGGC
GGTCGACAGAAAAAATCGGCATGATCACAAGGGCGATGAAATCTAGGTAG
CGTTCGCGAGAAAAAATCAATCGCGAACGACGACAATCGCACAAGTACAA
CGAAAGGAACCCTAATCCC
back to top

Coding sequence (CDS) from alignment at chr_00:10053038..10054206-

>Ec-00_006360.2 ID=Ec-00_006360.2|Name=Ec-00_006360.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=312bp|location=Sequence derived from alignment at chr_00:10053038..10054206- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTCTATCGAGGACATCGCAACGAAACAAACACGAAAACGCCTACAC
GTTCTTGAACCCCAAGCACACAATTGAAACCCACATACGTCTTGTGTACT
TGCAAAAGACCCTGAAAGGGAAGTTTACCTTGTCAAGACCAGGTGGTCGC
ACGGAAGCTCTATTGCATCAGTATCACCCAAGGGCGGCCTGCTGCTTCAA
AACACGTACGTGTGACCCATCTCTCGACGTCCCGCACAACAACCAAAAAT
GCCATCCGCCTTCCTGCTTATCACGAACCAAACCACCCAACAATTCCACA
CTGTGGTGGTGA
back to top
Synonyms
The feature 'Ec-00_006360.2' has the following synonyms
Synonym
Esi0495_0001
Esi_0495_0001