Ec-00_005480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_005480.1
Unique NameEc-00_005480.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length38
Homology
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: D7G194_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G194_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-18
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 MWGTNVQAQGRQQCWTSPRSSLRSGVGSLPRRSSGAG 111
            MWGTNVQAQGRQQCWTSPRSSLRSGVGSLPRRSSGAG
Sbjct:    1 MWGTNVQAQGRQQCWTSPRSSLRSGVGSLPRRSSGAG 37
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.310e-7
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATMLDVTEILSEKW   S+QTVIRCWL
Sbjct:  530 QATMLDVTEILSEKWESFSSQTVIRCWL 557
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 6.330e-7
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATMLDVTEILSEKW   S+QTVIRCWL
Sbjct:  325 QATMLDVTEILSEKWESFSSQTVIRCWL 352
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5KQT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT9_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.190e-6
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATMLDVTEILS+KW   S QTV+RCWL
Sbjct:   37 QATMLDVTEILSQKWESFSDQTVVRCWL 64
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 5.650e-6
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATMLDVTEILS+KW   S QTV+RCWL
Sbjct:  104 QATMLDVTEILSQKWESFSDQTVVRCWL 131
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5L2W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W8_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 8.170e-6
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATML+VTEI S+KW RL  QTVIRCWL
Sbjct:   50 QATMLNVTEICSQKWRRLDVQTVIRCWL 77
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: D8LM87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM87_ECTSI)

HSP 1 Score: 45.8 bits (107), Expect = 1.450e-5
Identity = 21/31 (67.74%), Postives = 21/31 (67.74%), Query Frame = 2 
Query:    2 CGEPTCKHK--------AGNNAGRHRDPL*E 70
            CGEPTCKHK        AGNN GRHRDPL E
Sbjct:   21 CGEPTCKHKSLLITAIRAGNNVGRHRDPLSE 51
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            Q TMLDVTEILS+KW   S QTVIRCWL
Sbjct:  590 QPTMLDVTEILSQKWESFSDQTVIRCWL 617
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 2.720e-5
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            Q TMLDVTE+LS+KW   S QTVIRCWL
Sbjct:  347 QPTMLDVTEVLSQKWESFSDQTVIRCWL 374
[Close]
BLAST of Ec-00_005480.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 4.940e-5
Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 3 
Query:   30 QATMLDVTEILSEKWSRLSAQTVIRCWL 113
            QATMLDVTEI S+KW     QTVIRCWL
Sbjct:   48 QATMLDVTEICSQKWRSFDVQTVIRCWL 75
The following BLAST results are available for this feature:
BLAST of Ec-00_005480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G194_ECTSI1.560e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV64_9PHAE6.310e-785.71HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEY2_9PHAE6.330e-785.71HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5KQT9_9PHAE5.190e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8A7_9PHAE5.650e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W8_9PHAE8.170e-678.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM87_ECTSI1.450e-567.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA74_9PHAE1.980e-578.57HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JLK3_9PHAE2.720e-575.00HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KXD1_9PHAE4.940e-575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:8701792..8702331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length114
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_005480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_005480Ec-00_005480Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 8701517..8703099 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005480.1.1Ec-00_005480.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8701792..8701818 +
Ec-00_005480.1.2Ec-00_005480.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 8702245..8702331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005480.1CDS:Ec-00_005480.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 8701792..8701818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_005480.1Ec-00_005480.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 8701792..8702331 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_005480.1 ID=Ec-00_005480.1|Name=Ec-00_005480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=38bp
MWGTNVQAQGRQQCWTSPRSSLRSGVGSLPRRSSGAG*
back to top

spliced messenger RNA

>Ec-00_005480.1 ID=Ec-00_005480.1|Name=Ec-00_005480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=114bp|location=Sequence derived from alignment at chr_00:8701792..8702331+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGGAACCAACGTGCAAGCACAAGGCAGGCAACAATGCTGGACGTC
ACCGAGATCCTCTCTGAGAAGTGGAGTAGGCTCTCTGCCCAGACGGTCAT
CAGGTGCTGGCTGA
back to top

protein sequence of Ec-00_005480.1

>Ec-00_005480.1 ID=Ec-00_005480.1|Name=Ec-00_005480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=38bp
MWGTNVQAQGRQQCWTSPRSSLRSGVGSLPRRSSGAG*
back to top

mRNA from alignment at chr_00:8701792..8702331+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_005480.1 ID=Ec-00_005480.1|Name=Ec-00_005480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=540bp|location=Sequence derived from alignment at chr_00:8701792..8702331+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGGGAACCAACGTGCAAGCACAAGTAAGTCTCTGCTGATCACAGCA
ATCCACGAGTGCCCTTGCGGGCGGCCGATGCATGCCTTCTGCGGGCGAGG
CATCGGGGATGAAGGCTACGGGCAGCAGCGAATGTGCACGGATTGTCAGA
AGAGAATGGATGAGGGCGGGTACAAGACGGAGATGGTGACCAGGCTTGCG
GACCTCATCGAAGACAGGGACACCATCCGTGCACGAAAGATCCGAAGGTG
AGCAAACAACTGTAGAAAGGGGCCCTCTGTAATTCCGTTGGGGCAGATTT
TGACGAAGGTGCTGAATATATATTAACTGGTGTGGCGTACGTCTACAACT
TGACACATCGCTTATGCTTGAAACTAAACTTATTCTCTGTCCCCGGTTTT
GCCTCTCCCCACGTTTTCGTTTGACAGGGGTTGCCGGGGCCTCAGTGATG
CAGGGCAGGCAACAATGCTGGACGTCACCGAGATCCTCTCTGAGAAGTGG
AGTAGGCTCTCTGCCCAGACGGTCATCAGGTGCTGGCTGA
back to top

Coding sequence (CDS) from alignment at chr_00:8701792..8702331+

>Ec-00_005480.1 ID=Ec-00_005480.1|Name=Ec-00_005480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=114bp|location=Sequence derived from alignment at chr_00:8701792..8702331+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGGGAACCAACGTGCAAGCACAAGGCAGGCAACAATGCTGGACGTC
ACCGAGATCCTCTCTGAGAAGTGGAGTAGGCTCTCTGCCCAGACGGTCAT
CAGGTGCTGGCTGA
back to top
Synonyms
The feature 'Ec-00_005480.1' has the following synonyms
Synonym
Esi0443_0001
Esi_0443_0001