Ec-00_004250.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_004250.1
Unique NameEc-00_004250.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length55
Homology
[Close]
BLAST of Ec-00_004250.1 vs. uniprot
Match: D8LKZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.660e-29
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 MDKKPHGATGGGDQDVPFEDPEDAVGFGARRLLQRLPTKTYCTAGNQRPAHGFR 162
            MDK PHGATGG DQD PFEDPEDAVGFGARRLLQRLPTKT CTAGNQRPAHG R
Sbjct:    1 MDKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTCCTAGNQRPAHGLR 54
[Close]
BLAST of Ec-00_004250.1 vs. uniprot
Match: D8LMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM4_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.360e-23
Identity = 43/47 (91.49%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 MDKKPHGATGGGDQDVPFEDPEDAVGFGARRLLQRLPTKTYCTAGNQ 141
            MDK PHGATGG DQD PFEDPEDAVGFGARRLLQRLPTKTY TAGNQ
Sbjct:    1 MDKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTYGTAGNQ 47
[Close]
BLAST of Ec-00_004250.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.710e-14
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 3 
Query:   12 ASRCYGGGRPGRALRRPGGCCGFWSSEVAAAAANEDVLHSR 134
            ASRCYG GR GRALRRPGGC GFWSSEVAA AANE+VLHSR
Sbjct:  323 ASRCYGRGRLGRALRRPGGCRGFWSSEVAATAANENVLHSR 363
The following BLAST results are available for this feature:
BLAST of Ec-00_004250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKZ3_ECTSI2.660e-2990.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMM4_ECTSI9.360e-2391.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRZ1_ECTSI7.710e-1487.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5685368..5688476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length165
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_004250.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004250Ec-00_004250Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 5682098..5688824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004250.1.2Ec-00_004250.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5685368..5685399 -
Ec-00_004250.1.1Ec-00_004250.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 5688344..5688476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004250.1CDS:Ec-00_004250.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 5685368..5685399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_004250.1Ec-00_004250.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 5685368..5688476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_004250.1 ID=Ec-00_004250.1|Name=Ec-00_004250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=55bp
MDKKPHGATGGGDQDVPFEDPEDAVGFGARRLLQRLPTKTYCTAGNQRPA
HGFR*
back to top

spliced messenger RNA

>Ec-00_004250.1 ID=Ec-00_004250.1|Name=Ec-00_004250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=165bp|location=Sequence derived from alignment at chr_00:5685368..5688476- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAAAAGCCTCACGGTGCTACGGGGGGGGGCGACCAGGACGTGCC
CTTCGAAGACCCGGAGGATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGC
AGCGGCTGCCAACGAAGACGTACTGCACAGCAGGAAACCAGCGACCGGCG
CATGGATTCAGATGA
back to top

protein sequence of Ec-00_004250.1

>Ec-00_004250.1 ID=Ec-00_004250.1|Name=Ec-00_004250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=55bp
MDKKPHGATGGGDQDVPFEDPEDAVGFGARRLLQRLPTKTYCTAGNQRPA
HGFR*
back to top

mRNA from alignment at chr_00:5685368..5688476-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_004250.1 ID=Ec-00_004250.1|Name=Ec-00_004250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3109bp|location=Sequence derived from alignment at chr_00:5685368..5688476- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAAAAAGCCTCACGGTGCTACGGGGGGGGGCGACCAGGACGTGCC
CTTCGAAGACCCGGAGGATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGC
AGCGGCTGCCAACGAAGACGTACTGCACAGCAGGTGAGCTCTTTCTCCAC
ATCAGGAGATACAGCATACGAGTGCTGTTTAGCACAGGAGTGTAGATCGC
TCAGTGGAATGCAGCAGCCTTGGGATGCAGTACAAGGTTTGGGTTGTGGA
CGGCCGAACACGCAGTGTAGAATAGACAGTCTAACCAAAAATGACAGCTA
CGCTCGTGTTTGTCACCCCCGGTTTTTGTACCAAAAATATCAAGGGCTTA
CTCGGTAACATTTTTTTAGGCGGACAGGTTTTCGGCGGTAATGCCATTTG
GCGGTAATTAACGTTGATTCAGTGGTCTAATGGTCAGAGCTTTCTTACAC
AAGGTTCCACGCACGGGTTCGAATCCCAGTGGTCCACTTACACCACAACC
GCCATTTGTTTACCAAACAGCAACGCATGGCAAGGGGTCCGTCCCCGGAG
ATCCCCACTCTCGATCCCAGCGTGATTAAAAAGCTTAGACTAACCCCATG
TGATCCGGCCGGGTGCAAACGAGCTCTGAGCATATCTTTTATAAGATAAA
AATAGACCATCTGATCAGTCAACGTTGACTCAGTGGTCTAATGGTCAGAG
CTTCCTTACACAAGGTTCCACGCACGGGTTCGAATCCCATTGGTCCACTT
ACACAACAACCGCCATTTGTTTACCACACAGCAACGCATGGCAAGGGGTC
CGTCCCCGGAGATCCCTACTCTCGATCCCAATGATTAAAAAGCTTAACCC
CATGTGATCCGGCCGGGTGCAAACGAGCTCTGAGCATATCTTTTATAAGT
TAAAATTAGACCATCTGATCAGTCAGTCAACGGGTGCAAACGAGCTCTGA
GCATATCTTTTATAAGATAAAATTAGACCATCTGATCAGTCAACGTTGAC
TGACTGATCAGATGGTCTAATTTGTTGACTGATCAGATGGTCTAATTTTA
TCTTATAGGTAACGCATTTTTCGGCGGTAACAACTTTGGCGGAGGCGGTA
GAACCAGAAAACGGCGGTAATTTTTCGGCGGTAATGCCGTACGGCGGTAA
TGGTTTTGGCGGTGGACGGTAACGCGTTTTTCGGCGGTAACGGCTTTGGC
GGAGGCGGTAAAACCAAACAACGGCGGTAATTTTTCGGCGGTAACGCCAT
ACGGCGGGAATGGCTTTGGCGGAAGGCGGTAACGCGTTTTTCGTCGGTAA
CGACTTTGGCGGAGGCGGTAAAACCAAAAAACGGCGGTAAAACGGCGGAT
TACCGGGACCGCCCACCACGGCGGTAATTTGACGGTGGTAATGAGTGCCA
TTGCCATATATACAGATGATAACAAATTCAAGCGACACCAAACAAGGCCG
CAAGTGCGGTGCCGAGTTACGGCGTCCGAACAGATGGCAATCCTCCTTTC
CGAAGATTGGCCTTGGACTTTCATGGATTGTTTTGTCGTATTCACCATGC
CTTTCGCATTTATTTCAGAGTCAGCACGACGTAAAAAACGAATTTTATAT
AAACGGAAAAACGGAAAAATGAACCCGAACCAAACTCCAGAACCAAAGAG
CAGATGAAATAATATCTTTGAAAAATGAAAAATATGTTCGGAAACAATAC
AAGCAAGTCCACGTGCGGACCCGAACTCCTGACGGTCATTGATCTGGCAT
GATGGCCGAGGCTACACCTCGAGTCACTCGGACCGTCGATAGGCGGTAAC
GTACCTATTTGACGGTGATTTTTCGGCGGAAATGCCGATGGCGGTAATTT
TTCGGCGGTAACGCCATACCGCGTTAATTGCTTTGGCGGTAGGCGGTAAC
GAATTTTTCGGCGGTAACGACTTTGGCGGAGGCGGTAAAACAAAAAAACG
GTGGTAATTTTTCGGCGGTAATGCCATACGGCGGTAATGGTTTGGCGGTA
GGCGGTAACGCGTTTTTCGGCGGTAGCGGCTTTGGTGGAGGCGGTAAAAC
CAAAAAACGGCGGTAAAACGGCGGATTACCGGGACCGCCCACCACGCGGT
TTGACGGCGCCTTGAAACATATAATGCGAAAAGAGGATCCAACACATACA
TGCAGCTTTCGACACGAAGAAAAAAATACTTGTACCACTGGAGCCTACGT
CTGGACTATGCATACGAGCCATTTGGTGAGAGTTTGCGACCTTCGGACAT
TTGCCGTATTTTTCTCGACGCGGCAATATTTATCATCACAGTCAGTATGA
TACAATTACGTCACCCGGCAACGAGCACAGAACTTGAGTGTATGACGTCT
GTACAGCGGTCAGTATGAATATACTGCTGTAGGCACAACAATAGAGTCCA
AGTCAAGATTGCTGTAGACCACGCTCGCTCGAGTAGTCCGGAGTGCTGAC
GTCCGTTGTCATTGCAGCTCTTGATACACGCAGCAATGATTCGGGCGGGC
AGGGGGTTTCGAAGAATTATGTATGTGCTGCTGTACAAGTAGTAGTTTGT
TTACTGCCGAAAGTGCCGACGGAATCTAGTGCGAAGATGCCCCTCATCAC
CATAGTGCGTACCTCATGACCGCCCCATAACGCACGCACACATACATTCA
TGGCATTTAGAAGAGTTTCGTGTTTTCCACCGCGCTTAGACTGGCCTAAA
GTCATTGGTCTGCCGGTTAGCGCGGTCGATGCTAAAAATAAACGCACACA
CACCAAAATATGGTCCCACACACCCCGTACGAACGCGAAAAAAAAACACA
GCAGCAACAATATTTACGCGGCCCATCGCGCTTGCTTACAGCAGCAGTAG
TTTGCGATCGGTGCTTCCACGAAGACTCTCTCTCCTCCTCTTCTTGTGTT
CGCACTACATAGACCCTGGGCTAAAGCTCGACAGACTACATTATTTCTGG
ACCCATTTCAGGTTTCTAGCACCTCACGGTTCATTTGAAACGTCAAACAA
GGATTGTGGCACTCGGTTCCACCGAATTTTCTCCTTGACAACCTGGTCAC
TTTACGTTTTTTCAACTCTCCATACAGGAAACCAGCGACCGGCGCATGGA
TTCAGATGA
back to top

Coding sequence (CDS) from alignment at chr_00:5685368..5688476-

>Ec-00_004250.1 ID=Ec-00_004250.1|Name=Ec-00_004250.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=165bp|location=Sequence derived from alignment at chr_00:5685368..5688476- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACAAAAAGCCTCACGGTGCTACGGGGGGGGGCGACCAGGACGTGCC
CTTCGAAGACCCGGAGGATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGC
AGCGGCTGCCAACGAAGACGTACTGCACAGCAGGAAACCAGCGACCGGCG
CATGGATTCAGATGA
back to top
Synonyms
The feature 'Ec-00_004250.1' has the following synonyms
Synonym
Esi344_0044
Esi_344_0044