Ec-00_003930.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003930.2
Unique NameEc-00_003930.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length165
Homology
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BLAST of Ec-00_003930.2 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.280e-42
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:  616 MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT 1059
            MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT
Sbjct:    1 MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSRKTSDHDNVRHDPGTLWWFSAELRQAQSSSTCFRSIWRNT 148
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BLAST of Ec-00_003930.2 vs. uniprot
Match: A0A6H5KLI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.360e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = -2 
Query:  171 SVIFIHIFHEVWKVTLWPITRGRHRSLPSLLQSPSSPSMSTGR 299
            SVIFI +FH+VWKVT W ITRGRHR  PSL+Q PS PSMSTGR
Sbjct:   26 SVIFIIVFHQVWKVTHWQITRGRHRPPPSLIQRPSFPSMSTGR 68
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BLAST of Ec-00_003930.2 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.600e-8
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 2 
Query:  416 KGSGSSTRRRATPDAIEAGWIARTGGGITRFSRSK 520
            +GSGSSTRR ATP+AIEAGWIARTGGG+TRFSRSK
Sbjct:    4 RGSGSSTRR-ATPNAIEAGWIARTGGGVTRFSRSK 37
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BLAST of Ec-00_003930.2 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.930e-5
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  984 VMVVLGGAAAGPIFIYMLQKHMEEHV 1061
            VMVVLGGAAAGPIFIYMLQKHMEEHV
Sbjct:  195 VMVVLGGAAAGPIFIYMLQKHMEEHV 220
The following BLAST results are available for this feature:
BLAST of Ec-00_003930.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FVS2_ECTSI1.280e-42100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLI7_9PHAE4.360e-1276.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ81_ECTSI3.600e-888.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S0_ECTSI1.930e-5100.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4508854..4511439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1063
Hectar predicted targeting categoryother localisation
Gene idEc-00_003930.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930Ec-00_003930Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4508854..4511439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.2Ec-00_003930.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4509422..4511439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.2.1Ec-00_003930.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4508854..4509422 +
Ec-00_003930.2.2Ec-00_003930.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4509529..4509602 +
Ec-00_003930.2.3Ec-00_003930.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4510361..4510670 +
Ec-00_003930.2.4Ec-00_003930.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4510784..4510889 +
Ec-00_003930.2.5Ec-00_003930.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4511436..4511439 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0039305UTR:Ec-00_003930.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 4508854..4509421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003930.2CDS:Ec-00_003930.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4509422..4509422 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003930.2 ID=Ec-00_003930.2|Name=Ec-00_003930.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=165bp
MCGHHRGRRLRELRSKMAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSD
PPARASESVVSGGGARRQSTGTAPQGSSSQTVPAPSTRRQSAPPVAGAGS
GSGGGSSSAAPAASSAATSSQSTSRKTSDHDNVRHDPGTLWWFSAELRQA
QSSSTCFRSIWRNT*
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spliced messenger RNA

>Ec-00_003930.2 ID=Ec-00_003930.2|Name=Ec-00_003930.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1063bp|location=Sequence derived from alignment at chr_00:4508854..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCGATAATTAAGGTATGTGTACCGGGAGGATACATATATAGGGGACATGT
CGATATGATTGCTATTATTCCACGGGGAACTGGGTTATGAAGATCCGATT
GGGGAGGTGGATGTCAATGGTATGGAGTACCATTGGGGGTCTCGGTGTAC
TGAGACGGCATTTTGTTAGGGCCTGCCAGTTGACATGGAAGGGGAACTTG
GACTCTGGAGGAGAGAGGGAAGCGACCGGTGTCGTCCCCTCGTTATTGGC
CAGAGAGTTACCTTCCAGACTTCGTGGAAAATATGAATAAAAATGACACT
TCGGAAAAATACAAAAAATATTGCCTTTTTTTTAAACCTTCTAATGGTTG
AACCTGTCCCACGTCAGAAAGCCTCACTCCCCACCCACCACCCACACAGA
CGCGCGCCATGGCGTCAAGGGGTCAGGTTCATCAACCCGCCGTAGGGCTA
CCCCTGATGCCATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGATA
ACCCGCTTCTCCCGCTCCAAGTCTAAGGGAAAGGGGAAAAAGCATGCTTC
GCCACCGCCGCAGGCTCAATGTGCGGTCACCACCGAGGCCGGCGCCTGCG
CGAGCTCAGGTCCAAGATGGCCGTTGAAGACGAAGCATGCAACGCGGAGG
AGCCCGATGTCGATGATGATGTTGAGACGGACCTGTCCTCCGTCAGGAAC
GTCTCCGGAGGCTCGGATCCGCCGGCCAGGGCGTCGGAGAGTGTTGTTTC
CGGCGGTGGTGCTCGTCGGCAGTCGACGGGGACTGCCCCGCAGGGTTCGT
CTTCGCAGACAGTACCTGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCC
GTTGCCGGTGCTGGTAGCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCC
CGCAGCATCTTCCGCCGCAACATCTTCGCAGAGCACCTCACGCAAGACTT
CTGATCACGATAACGTCCGCCATGACCCCGGCACGTTATGGTGGTTCTCG
GCGGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATATG
GAGGAACACGTAA
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protein sequence of Ec-00_003930.2

>Ec-00_003930.2 ID=Ec-00_003930.2|Name=Ec-00_003930.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=165bp
MCGHHRGRRLRELRSKMAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSD
PPARASESVVSGGGARRQSTGTAPQGSSSQTVPAPSTRRQSAPPVAGAGS
GSGGGSSSAAPAASSAATSSQSTSRKTSDHDNVRHDPGTLWWFSAELRQA
QSSSTCFRSIWRNT*
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mRNA from alignment at chr_00:4508854..4511439+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003930.2 ID=Ec-00_003930.2|Name=Ec-00_003930.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2586bp|location=Sequence derived from alignment at chr_00:4508854..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCGATAATTAAGGTATGTGTACCGGGAGGATACATATATAGGGGACATGT
CGATATGATTGCTATTATTCCACGGGGAACTGGGTTATGAAGATCCGATT
GGGGAGGTGGATGTCAATGGTATGGAGTACCATTGGGGGTCTCGGTGTAC
TGAGACGGCATTTTGTTAGGGCCTGCCAGTTGACATGGAAGGGGAACTTG
GACTCTGGAGGAGAGAGGGAAGCGACCGGTGTCGTCCCCTCGTTATTGGC
CAGAGAGTTACCTTCCAGACTTCGTGGAAAATATGAATAAAAATGACACT
TCGGAAAAATACAAAAAATATTGCCTTTTTTTTAAACCTTCTAATGGTTG
AACCTGTCCCACGTCAGAAAGCCTCACTCCCCACCCACCACCCACACAGA
CGCGCGCCATGGCGTCAAGGGGTCAGGTTCATCAACCCGCCGTAGGGCTA
CCCCTGATGCCATAGAGGCGGGCTGGATCGCGAGGACAGGGGGGGGGATA
ACCCGCTTCTCCCGCTCCAAGTCTAAGGGAAAGGGGAAAAAGCATGCTTC
GCCACCGCCGCAGGCTCAAGTAAGTGCGCGCGATACCGATGGGACCTGCC
ATGGGGTTTGTGCAGCTGCTGTTGAGGAGGCTGAGCGATATCTTGGTCCA
TTGTCGGATTTGATGGATTCACCAGTGTGCGGTCACCACCGAGGCCGGCG
CCTGCGCGAGCTCAGGTCCAAGATGGCCGTTGAAGACGAAGCATGCAACG
TGCGTAAATGAGCGGCTACCGTTGTTATTTTATTTTTTTAAGTTTTCGTA
CCATCAATACATGGCCTTGTCAAATAGCTGGACCGTCCCTATGGTGTCAT
GTACCTGCACTGATAGGTACTGCTGCCCTTTCTATTACAGTCGCGAACGC
TCTTCCTTTTAATCGTGAACTCCCTCTCTACGTGGCAGTTGAAAGGACAA
AGTGTCGAGAGTGTGACGCACGTATGCATGATGGCCTGTACATAATTTCC
AAACACCAACCATCTACAAGCACAGCAGCATTTGGGACTTACATGCACCT
GTGTCTGGTTCGCTCTGGACCCAATTTGATGCAGATGAACTGCAGAGGGA
CATGTTGCGGAGTTTGAGCTAGGTTCGGGGCTCTTGCCTTGATGGATGTG
CTGGATGAGGAAACCTGTAGCTTTCACCAACGACTGCTTTTTTCAAGGCG
GCACAATATCTCGGGTTGTTGAATTTAGTATAAATAAAGGAAAAATAAAT
AAAGACTATCCATTCGAGATATATTAGTTGCGCAAGAGCGAATAGCCAAC
AACTACGCTTCCATGTATGGGTACAACTTGTCCTCGAAGGTTTCAGATCG
CATTCCGGCTAACCCCGAATCTCGAGTCCTTTCAACGTCCTCTCGTCATA
GCCGCATTATGACGCAATACGTTGTGCCCAGCCACATCGCAAAACTTGCT
CTAATTTTTGTGTCTGACCCGCTTTTGTCGGGTTGCTTGTGTCTTTGTCT
GTCCCAGGCGGAGGAGCCCGATGTCGATGATGATGTTGAGACGGACCTGT
CCTCCGTCAGGAACGTCTCCGGAGGCTCGGATCCGCCGGCCAGGGCGTCG
GAGAGTGTTGTTTCCGGCGGTGGTGCTCGTCGGCAGTCGACGGGGACTGC
CCCGCAGGGTTCGTCTTCGCAGACAGTACCTGCCCCGTCCACACGTCGCC
AGTCCGCGCCCCCCGTTGCCGGTGCTGGTAGCGGGAGCGGCGGCGGCAGC
AGCAGTGCCGCGCCCGCAGCATCTTCCGCCGCAACATCTTCGCAGAGCAC
CTCACGCAAGACTTCTGGTACGTTTGGCGAGATCACACCCTCGCACCCTG
CTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGGTGATGCT
GCCTCCGGCTCCGGTTCTTCTAATCGTGAGATCACGATAACGTCCGCCAT
GACCCCGGCACGTTATGGTGGTTCTCGGCGGAGCTGCGGCAGGCCCAATC
TTCATCTACATGCTTCAGAAGCATATGGAGGAACACGTGAGTAAAATAGG
TCTTCCCTGAGAAAAGAATCACTTTTTGTGGGACAGATATGTTTTTATTT
TGGATGAACGAGTCACATACAAACATTGATTTTGGGCATCCAGCACGCGT
TCAACAATTGGGTCTTTCCCATAGAGTGGACGACGATAGAAGAAGGGGTT
AACGTTATGGGTCTAACTCGAGGTCCGCCCTCTTGCGTAGACACACCACT
CTCATTGTTCCACTATGTTTTCCATGACGTGGAGGCGTAGCCAGGACTCC
TACATATACCTTGATGTGTATTGGAATCCTTCCAACAGTCACACACACAC
ATGGTCAATCGAGTACTTCCCATCATGCAGCAACGGAAAGAGTTGCAGTT
TTCATCCTTGACACGAGGCCGAGGGTCATGAATTATTGCGGCGTGCCGCA
CTCAACCTGTCGTCTGTTTGATGTTGTTCGATTCCTACAAAATGTATTCG
TCACAGACGGCAATCCACACTCTCCCTCCTGCCCCGCTTGATGTCCCGCC
CGCCGTTGTTTTTCCCACTACATCCGTCGCAGGTAA
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Coding sequence (CDS) from alignment at chr_00:4508854..4511439+

>Ec-00_003930.2 ID=Ec-00_003930.2|Name=Ec-00_003930.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=495bp|location=Sequence derived from alignment at chr_00:4508854..4511439+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCGGTCACCACCGAGGCCGGCGCCTGCGCGAGCTCAGGTCCAAGAT
GGCCGTTGAAGACGAAGCATGCAACGCGGAGGAGCCCGATGTCGATGATG
ATGTTGAGACGGACCTGTCCTCCGTCAGGAACGTCTCCGGAGGCTCGGAT
CCGCCGGCCAGGGCGTCGGAGAGTGTTGTTTCCGGCGGTGGTGCTCGTCG
GCAGTCGACGGGGACTGCCCCGCAGGGTTCGTCTTCGCAGACAGTACCTG
CCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTGCCGGTGCTGGTAGC
GGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCAGCATCTTCCGCCGC
AACATCTTCGCAGAGCACCTCACGCAAGACTTCTGATCACGATAACGTCC
GCCATGACCCCGGCACGTTATGGTGGTTCTCGGCGGAGCTGCGGCAGGCC
CAATCTTCATCTACATGCTTCAGAAGCATATGGAGGAACACGTAA
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Synonyms
The feature 'Ec-00_003930.2' has the following synonyms
Synonym
Esi0299_0004
Esi_0299_0004