Ec-00_003760.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003760.1
Unique NameEc-00_003760.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length221
Homology
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BLAST of Ec-00_003760.1 vs. uniprot
Match: D7G0S0_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S0_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.220e-60
Identity = 168/210 (80.00%), Postives = 168/210 (80.00%), Query Frame = 1 
Query:   31 EEPNVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGAGRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXSDREIMITSAMTPAEAMAHVMVVLGGAAAGPIFIYMLQKHMEEHVERCVKVALTVRSLVIAVVEYNVVLMLLKY 660
            EEPNVDDDVEADLSSVRNVSAGSDPSARASKSV      GRQ                                XXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXX DREI ITSAMTPAEAMA VMVVLGGAAAGPIFIYMLQKHMEEHVER VKVALTVRSLVIAVVEYNVVLMLLKY
Sbjct:   46 EEPNVDDDVEADLSSVRNVSAGSDPSARASKSV------GRQSTGAAPQGSSSQTVPAPSTRRKSAPPVTGAGSXXXXXXXXXXXXXXXXXXXXXXTSRRTSGTFGEITPSRPAAASGFGXXXXXXXXXXXXXXXXXDREITITSAMTPAEAMARVMVVLGGAAAGPIFIYMLQKHMEEHVERFVKVALTVRSLVIAVVEYNVVLMLLKY 249
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BLAST of Ec-00_003760.1 vs. uniprot
Match: D7FJ81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ81_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.010e-18
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 3 
Query:  312 AEHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC 413
            +EHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC
Sbjct:  136 SEHLTQDFWYVWRDHTLAPCCCLRLRFWCCPRRC 169
[Close]
BLAST of Ec-00_003760.1 vs. uniprot
Match: D7FVS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 2.310e-9
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 MAVEDEAPNAEEPNVDDDVEADLSSVRNVSAGSDPSARASKSV 129
            MAVEDEA NAEEP+VDDDVE DLSSVRNVS GSDP ARAS+SV
Sbjct:    1 MAVEDEACNAEEPDVDDDVETDLSSVRNVSGGSDPPARASESV 43
The following BLAST results are available for this feature:
BLAST of Ec-00_003760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0S0_ECTSI1.220e-6080.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FJ81_ECTSI7.010e-1897.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVS2_ECTSI2.310e-986.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4080859..4083144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length663
Hectar predicted targeting categoryother localisation
Gene idEc-00_003760.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003760Ec-00_003760Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4080859..4083144 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003760.1.1Ec-00_003760.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4080859..4080885 +
Ec-00_003760.1.2Ec-00_003760.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4081622..4082164 +
Ec-00_003760.1.3Ec-00_003760.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4083052..4083144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003760.1CDS:Ec-00_003760.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4080859..4080885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003760.1Ec-00_003760.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4080859..4083144 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003760.1 ID=Ec-00_003760.1|Name=Ec-00_003760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=221bp
MAVEDEAPNAEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGAG
RQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGAGSGSGGGSSSAAPAASSA
ATSSQSTSRRTSGTFGEITPSRPAAASGFGSGAAPVAADAASGSGSSDRE
IMITSAMTPAEAMAHVMVVLGGAAAGPIFIYMLQKHMEEHVERCVKVALT
VRSLVIAVVEYNVVLMLLKY*
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spliced messenger RNA

>Ec-00_003760.1 ID=Ec-00_003760.1|Name=Ec-00_003760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=663bp|location=Sequence derived from alignment at chr_00:4080859..4083144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTTGAAGACGAAGCACCCAACGCGGAGGAGCCCAATGTCGATGA
TGATGTTGAGGCGGACCTGTCTTCCGTCAGGAACGTCTCCGCAGGCTCGG
ATCCGTCGGCCAGGGCGTCGAAGAGTGTTGTTTCCGGCGGTGGTGCTGGT
CGGCAGTCGACGGGGGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACC
TGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTACCGGTGCTGGTA
GCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCGGCATCCTCCGCC
GCAACATCTTCGCAGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGA
GATCACACCCTCGCGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTG
CCCCCGTCGCTGCTGATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAG
ATCATGATAACGTCCGCCATGACCCCGGCTGAAGCCATGGCGCACGTTAT
GGTGGTTCTCGGCGGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTC
AGAAGCATATGGAGGAACACGTAGAGCGATGCGTCAAAGTTGCCCTGACC
GTCAGGTCTCTAGTCATCGCGGTGGTCGAATACAACGTTGTGCTTATGCT
GCTGAAATATTAG
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protein sequence of Ec-00_003760.1

>Ec-00_003760.1 ID=Ec-00_003760.1|Name=Ec-00_003760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=221bp
MAVEDEAPNAEEPNVDDDVEADLSSVRNVSAGSDPSARASKSVVSGGGAG
RQSTGAAPQGSSSQTVPAPSTRRQSAPPVTGAGSGSGGGSSSAAPAASSA
ATSSQSTSRRTSGTFGEITPSRPAAASGFGSGAAPVAADAASGSGSSDRE
IMITSAMTPAEAMAHVMVVLGGAAAGPIFIYMLQKHMEEHVERCVKVALT
VRSLVIAVVEYNVVLMLLKY*
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mRNA from alignment at chr_00:4080859..4083144+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003760.1 ID=Ec-00_003760.1|Name=Ec-00_003760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2286bp|location=Sequence derived from alignment at chr_00:4080859..4083144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTTGAAGACGAAGCACCCAACGTGCGTAAATGCGCGGCTACTTT
TTTTTTTTTTTTTAGTTTTCGTACCATCATTACATGGCCTTGTCAAATAG
CTGGACCGTCCCTATGGTGTCATGTACCCGCACCGATAGGTACGGCTGTC
CTTTCTTTTACAGTCGCGACCGCTCTTCCTTTTAGTCGTGAACTCCCTCT
CTACGTGGCAGTTGAAAGGACGAAGTGTCGAGAGCATGACGCACGTATGC
ATGATGGCCTGCACATAATTTCCAAACACCAACCATCTACAAGCACAGCA
TTTGGAACTTACATTAACCTGTGTCTGGTTCGCTCTGGATCCAATTTGAT
GCAGATGAACTGCAGAGGGGCATGCGTACTTTCCTACGGGCTGTTGCGGA
GTTTGAGCTAGGTTCGGGGCTCTTGCCTCGATGGATGTGCTGGATGAGGA
AACCTGTAGCTTTCACCAACGACTGCTTTTTTCAAGGCAGCACAATATCT
CGAGTAAAAAGGAATAATTAATAAAGACTTGTACCCATTCGAGATATATT
AGTTGCGCAAGAGCGAACAGCCAACAACTACAAGTACGCTTCGAAGATTT
CAGATCGCATTCCGGCTAACCCCGAATCTCGAGTCCTCTCAACGTCCTCC
CGTCATAGCCGCATTATGACGCAATACGTTGTGCCCAGCCACATCGCAAA
ACTTGCTCTAATTTTTTTGTCTGACCCGCCCTTGTCGTGTTGCTGTGTCT
TTGTCTGTCCCAGGCGGAGGAGCCCAATGTCGATGATGATGTTGAGGCGG
ACCTGTCTTCCGTCAGGAACGTCTCCGCAGGCTCGGATCCGTCGGCCAGG
GCGTCGAAGAGTGTTGTTTCCGGCGGTGGTGCTGGTCGGCAGTCGACGGG
GGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACCTGCCCCGTCCACAC
GTCGCCAGTCCGCGCCCCCCGTTACCGGTGCTGGTAGCGGGAGCGGCGGC
GGCAGCAGCAGTGCCGCGCCCGCGGCATCCTCCGCCGCAACATCTTCGCA
GAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGAGATCACACCCTCGC
GCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTGCCCCCGTCGCTGCT
GATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAGATCATGATAACGTC
CGCCATGACCCCGGCTGAAGCCATGGCGCACGTTATGGTGGTTCTCGGCG
GAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTCAGAAGCATATGGAG
GAACACGTGAGTAAAATAGGTCTTCCCTGAGAAAATAATCACATTTTGTG
GGACAGATATGTTTTCATTTTGGATGAACGAGTCATTTACAAACATTAAT
TTTGGACACTTAGCACGTGTTCAACAATTGGGTCTTTCCCATAAAGTGGA
CGACGATAGAAGAAGGGGTTAACGTTATGGGTCTAACTCGACGTCCGCCC
TCTTGCGTAGACACACCACTCTCATAGTTCCCACTATATTTTCCATGACG
TGGAGGCGTAGCCAGGACTCCTACATATACCTTGATGTGTATTGGAATCC
TTCCAACTGTCACACACACATGGTCAATCGAGTACTTCCCATCATGCAGC
AATTTCCAAGAGTTGCAGTTTTCATCCTTGATATGAGGACGAGGGTCTTG
GTCATGAAATATTGCGGCGTGCCGCACTCAAACCTGTCGTCTGTTTGATG
TTGTTCGATTCCTACAAAATGTATTCGTCACAGACGGCAATCCACACTCT
CCCTCCTGCCCCGCTTGATGTCCCGCCCGCCGTTGTTTTTCCCACTACAT
CCGTCGCAGGTAAAGCTGGTTTTCTCCCCACTTCTCGGCGGCAGCTCGTC
GGTCGTTGCGGGTTCTCCGGGAAGTGCGACCCAGCCTGTCAGGCAGCCAG
GAGGCTCAGTACGTGGCTTCACTGCTGCCATCTCCGTGGTGTGGAGTTTT
GCACTCATCGGGCCCCAGCAGATGGACTACTGTACGGGGCATGGGCGGAC
GGACCCTGACACGAACGTATTCTGTAGGATGTCCTACATGTTCTGGGAGC
CCACCGGTCTACGATACGAGCCCTTCATGAGTGAGTGTTGTGTTTTTTTT
GGGTCATTCGAATAAGTTTTTGTGTGAACTGATTCACTCACAGGTAGAGC
GATGCGTCAAAGTTGCCCTGACCGTCAGGTCTCTAGTCATCGCGGTGGTC
GAATACAACGTTGTGCTTATGCTGCTGAAATATTAG
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Coding sequence (CDS) from alignment at chr_00:4080859..4083144+

>Ec-00_003760.1 ID=Ec-00_003760.1|Name=Ec-00_003760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=663bp|location=Sequence derived from alignment at chr_00:4080859..4083144+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCCGTTGAAGACGAAGCACCCAACGCGGAGGAGCCCAATGTCGATGA
TGATGTTGAGGCGGACCTGTCTTCCGTCAGGAACGTCTCCGCAGGCTCGG
ATCCGTCGGCCAGGGCGTCGAAGAGTGTTGTTTCCGGCGGTGGTGCTGGT
CGGCAGTCGACGGGGGCTGCCCCGCAGGGTTCGTCTTCGCAGACGGTACC
TGCCCCGTCCACACGTCGCCAGTCCGCGCCCCCCGTTACCGGTGCTGGTA
GCGGGAGCGGCGGCGGCAGCAGCAGTGCCGCGCCCGCGGCATCCTCCGCC
GCAACATCTTCGCAGAGCACCTCACGCAGGACTTCTGGTACGTTTGGCGA
GATCACACCCTCGCGCCCTGCTGCTGCCTCCGGCTTCGGTTCTGGTGCTG
CCCCCGTCGCTGCTGATGCTGCCTCCGGCTCCGGTTCTTCTGATCGTGAG
ATCATGATAACGTCCGCCATGACCCCGGCTGAAGCCATGGCGCACGTTAT
GGTGGTTCTCGGCGGAGCTGCGGCAGGCCCAATCTTCATCTACATGCTTC
AGAAGCATATGGAGGAACACGTAGAGCGATGCGTCAAAGTTGCCCTGACC
GTCAGGTCTCTAGTCATCGCGGTGGTCGAATACAACGTTGTGCTTATGCT
GCTGAAATATTAG
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Synonyms
The feature 'Ec-00_003760.1' has the following synonyms
Synonym
Esi0258_0002
Esi_0258_0002