Ec-00_003710.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003710.2
Unique NameEc-00_003710.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length111
Homology
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BLAST of Ec-00_003710.2 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 1.230e-84
Identity = 129/162 (79.63%), Postives = 134/162 (82.72%), Query Frame = 3 
Query:   24 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTF-MPTGTARRSMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADDSXXXXXXXXXXXXXXXXXXXXXTTSPCGDRSIDDRSSTDAGDAVFDSFGDMCISPSGRTF 506
            MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGA+TS+DTF     ++ + MLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADDS                     TTSPCGDRSIDDRSSTDAGDAVFDSFGDMCISPSGRTF
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQCMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADDSSPSGRNHQRPSQHSPQSLSGRTTSPCGDRSIDDRSSTDAGDAVFDSFGDMCISPSGRTF 162
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BLAST of Ec-00_003710.2 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 5.280e-28
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3 
Query:   24 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTF 176
            MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTF
Sbjct:    1 MGAAYSLVGVSYHIAHGGSRKNHFVTQLRVRGRWHKYDCLAGGAITSSDTF 51
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BLAST of Ec-00_003710.2 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.630e-19
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 SPSPTLFMGAAYSLVGVSYHIAHGGS-RKNHFVTQLRVRGRWHKYDCLAGGAITSSDTF-MPTGTARRSMLAYLKTSLCVATPPLY 254
            SPS T  MG  YSLVG+S  +A GG   +NHFV+Q+ +RGRWHK DCL GG +TSSD F      +   ML YL++S+CVATPP Y
Sbjct:   95 SPSMTFTMGVTYSLVGISCFLALGGGPNRNHFVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVHMLVYLRSSICVATPPPY 180
[Close]
BLAST of Ec-00_003710.2 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.670e-6
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:  117 GRWHKYDCLAGGAITSSDTFMPTGTARRS--MLAYLKTSLCVATPPLY 254
            GRWHKYDCL GG +TSSD +  +G    S  ML YL++++CVATPP Y
Sbjct:  576 GRWHKYDCLQGGIVTSSDAY-DSGWHVSSVHMLVYLRSAICVATPPPY 622
The following BLAST results are available for this feature:
BLAST of Ec-00_003710.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7U5_ECTSI1.230e-8479.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSJ9_ECTSI5.280e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE1.630e-1955.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE5.670e-658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3984633..3985384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length752
Hectar predicted targeting categoryother localisation
Gene idEc-00_003710.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710Ec-00_003710Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3984633..3985384 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.2.1Ec-00_003710.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3984633..3985384 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0037103UTR:Ec-00_003710.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 3984633..3984874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.2CDS:Ec-00_003710.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3984875..3985207 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0037105UTR:Ec-00_003710.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 3985208..3985384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003710.2Ec-00_003710.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3984875..3985207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003710.2 ID=Ec-00_003710.2|Name=Ec-00_003710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=111bp
MPTGTARRSMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADD
SSPSGRNHQRPSQHSPQSPSGRTTSPCGDRSIDDRSSTDAGDAVFDSFGD
MCISPSGRTF*
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spliced messenger RNA

>Ec-00_003710.2 ID=Ec-00_003710.2|Name=Ec-00_003710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=752bp|location=Sequence derived from alignment at chr_00:3984633..3985384- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TGTCGCCATCGCCGACCCTGTTCATGGGGGCGGCATATTCCTTGGTCGGC
GTATCTTACCATATTGCGCATGGTGGGTCACGGAAGAACCACTTCGTTAC
TCAACTGCGTGTCAGAGGAAGATGGCACAAGTACGACTGCCTGGCGGGAG
GAGCCATAACTTCTTCAGACACGTTCGATGCCGACTGGAACAGCTCGTCG
CAGTATGCTGGCGTACCTTAAGACTTCTTTGTGCGTCGCCACCCCACCGC
TGTACACGCGACACGAGGAACAACATCATAACAGCCCTTCTGGGCGACAA
CCGGGCCACCGTCATCACGCCGACGACAGCAGCCCTTCGGGCCGGAATCA
TCAACGCCCCTCGCAGCATTCGCCACAAAGCCCTTCAGGAAGGACTACAT
CGCCCTGTGGGGACCGTTCTATCGACGATCGCAGCTCCACGGATGCCGGG
GATGCCGTCTTCGATTCTTTTGGCGACATGTGTATCAGTCCCTCAGGCCG
AACTTTCTAGTTGTTTGTCTTCCTGTGTCTACTGTATGTAGACGTTGCAT
TTCGTGTTTCCCGAGGATCGGATGTATGTGTTGTTTTTTTATTGCGTACC
CGCGTCCATCACGACCATTATTGCGTAGTGTGTCGGCTAATTAAGGTCCC
TTCCCGTTCGTGGTGTCAGCACACGCGCAACACGCGACTAAAATAAAAAT
AAAAAGCTTGGGACTAGCAACGCCGACGATATTCGTCGGCTTGCTTTCAA
CA
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protein sequence of Ec-00_003710.2

>Ec-00_003710.2 ID=Ec-00_003710.2|Name=Ec-00_003710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=111bp
MPTGTARRSMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADD
SSPSGRNHQRPSQHSPQSPSGRTTSPCGDRSIDDRSSTDAGDAVFDSFGD
MCISPSGRTF*
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mRNA from alignment at chr_00:3984633..3985384-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003710.2 ID=Ec-00_003710.2|Name=Ec-00_003710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=752bp|location=Sequence derived from alignment at chr_00:3984633..3985384- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TGTCGCCATCGCCGACCCTGTTCATGGGGGCGGCATATTCCTTGGTCGGC
GTATCTTACCATATTGCGCATGGTGGGTCACGGAAGAACCACTTCGTTAC
TCAACTGCGTGTCAGAGGAAGATGGCACAAGTACGACTGCCTGGCGGGAG
GAGCCATAACTTCTTCAGACACGTTCGATGCCGACTGGAACAGCTCGTCG
CAGTATGCTGGCGTACCTTAAGACTTCTTTGTGCGTCGCCACCCCACCGC
TGTACACGCGACACGAGGAACAACATCATAACAGCCCTTCTGGGCGACAA
CCGGGCCACCGTCATCACGCCGACGACAGCAGCCCTTCGGGCCGGAATCA
TCAACGCCCCTCGCAGCATTCGCCACAAAGCCCTTCAGGAAGGACTACAT
CGCCCTGTGGGGACCGTTCTATCGACGATCGCAGCTCCACGGATGCCGGG
GATGCCGTCTTCGATTCTTTTGGCGACATGTGTATCAGTCCCTCAGGCCG
AACTTTCTAGTTGTTTGTCTTCCTGTGTCTACTGTATGTAGACGTTGCAT
TTCGTGTTTCCCGAGGATCGGATGTATGTGTTGTTTTTTTATTGCGTACC
CGCGTCCATCACGACCATTATTGCGTAGTGTGTCGGCTAATTAAGGTCCC
TTCCCGTTCGTGGTGTCAGCACACGCGCAACACGCGACTAAAATAAAAAT
AAAAAGCTTGGGACTAGCAACGCCGACGATATTCGTCGGCTTGCTTTCAA
CA
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Coding sequence (CDS) from alignment at chr_00:3984633..3985384-

>Ec-00_003710.2 ID=Ec-00_003710.2|Name=Ec-00_003710.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=333bp|location=Sequence derived from alignment at chr_00:3984633..3985384- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGACTGGAACAGCTCGTCGCAGTATGCTGGCGTACCTTAAGACTTC
TTTGTGCGTCGCCACCCCACCGCTGTACACGCGACACGAGGAACAACATC
ATAACAGCCCTTCTGGGCGACAACCGGGCCACCGTCATCACGCCGACGAC
AGCAGCCCTTCGGGCCGGAATCATCAACGCCCCTCGCAGCATTCGCCACA
AAGCCCTTCAGGAAGGACTACATCGCCCTGTGGGGACCGTTCTATCGACG
ATCGCAGCTCCACGGATGCCGGGGATGCCGTCTTCGATTCTTTTGGCGAC
ATGTGTATCAGTCCCTCAGGCCGAACTTTCTAG
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Synonyms
The feature 'Ec-00_003710.2' has the following synonyms
Synonym
Esi0235_0034
Esi_0235_0034