|
Homology
BLAST of Ec-00_002000.1 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE) HSP 1 Score: 355 bits (912), Expect = 5.990e-110 Identity = 209/268 (77.99%), Postives = 213/268 (79.48%), Query Frame = 1
Query: 1 MDYCHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFATAGAAGGTIGPPXXXXXXXSGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLMRMLLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 804
MD H D+GSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGF T A GTIGPP GTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQL+RMLL VG XXXXXXXXXXXXXX GAPAGPLLVHIRGSKEFL+YFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIP+FLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct: 1 MDNWHADDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAA--GTIGPPTTEGGGSGGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLVRMLLTVGGGAGAAGEPQQLGAAAVGVVKGSNGGGAAAEVGTXXXXXXXXXXXXXX----GAPAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 262
BLAST of Ec-00_002000.1 vs. uniprot
Match: D8LEE5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE5_ECTSI) HSP 1 Score: 130 bits (327), Expect = 3.400e-30 Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1
Query: 616 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 804
MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct: 1 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 63
BLAST of Ec-00_002000.1 vs. uniprot
Match: A0A836CHX9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX9_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.360e-11 Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 517 APAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSN 735
A PL HIRG EF+++FRA E AW R+ +SI+LDY DS+ GPIP F+G V ++ WLDLGRS+
Sbjct: 25 AAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQ---VKSLVWLDLGRSD 94
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 130.6 |
Seed ortholog evalue | 1.9e-27 |
Seed eggNOG ortholog | 2880.D8LEE5 |
Preferred name | SLITRK4 |
Length | 2772 |
Hectar predicted targeting category | other localisation |
Gene id | Ec-00_002000.1 |
GOs | GO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026 |
EggNOG free text desc. | positive regulation of synapse assembly |
EggNOG OGs | 28IKV@1,2QQXQ@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=460bp MDYCHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFATAGAA GGTIGPPTTGGGGSSGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRD VFKMGASCRQLMRMLLAVGGGAEGGAGAAAGEPQQQGAAAVGVVNGSNGG GAAAGAGVGGAAAAGVAAAAAGAPAGPLLVHIRGSKEFLSYFRALEQNAA WTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSI PENLGTLPNLRKLYLAGNQLVGPIPSSLGDIATLSDLSLAGNELSGAIPD SFGNLTLLRYLSLRDNKLSGAIPESLGNLVNLEELWLNANQIEGAIPASL GNMATARKVFLNNNCIEGTLPATLGNLSSLRILSLRHNRLTGTIPPELGR LSQLKTLYMEKNELEGNIPDTLANLASLKELNLLGNKFQGKAQTRNLLIG RLPNCVVYV* back to topspliced messenger RNA >Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2772bp|location=Sequence derived from alignment at chr_00:2217787..2229411+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.
ATGGATTACTGCCACGTTGACGAGGGCTCTGAGGCTCAGAACATCATCCG CCAGGCCGAAGCACCACCCGACAGCCCCTTCCGCCCGCGCTTCCGTCGAC GCTCGGGCGAGATCGCCATCCCAGCAGGCTTCGCAACAGCAGGGGCGGCA GGAGGAACGATAGGTCCGCCAACAACCGGAGGAGGGGGCAGCAGCGGTAC GGGCAGCAGCAAGAGCGATGTCCAGCGCATCAAGCTGGGCGTGCTGCTGG GGAAGAGGCCCGTGGCGGACGCCTTGTCGCGCTTCCTGACCCTGCGAGAC GTGTTCAAGATGGGCGCTTCCTGCCGGCAGCTTATGAGAATGCTCTTGGC CGTGGGCGGTGGGGCAGAAGGCGGGGCGGGCGCTGCTGCTGGGGAGCCGC AGCAGCAAGGAGCAGCGGCAGTTGGCGTTGTGAATGGATCGAACGGCGGT GGAGCTGCAGCAGGGGCAGGGGTGGGGGGGGCTGCGGCCGCTGGTGTTGC TGCTGCTGCTGCTGGCGCGCCTGCAGGACCCTTGCTGGTGCACATCAGGG GGTCGAAGGAATTTTTGTCGTATTTTAGAGCGCTGGAGCAGAACGCAGCG TGGACGCAACAACGCATGATGGCCGTGTCTATCGTGTTGGACTATCACGA CTCCATCGACGGACCCATCCCTTCTTTCCTTGGAGGGGGAGGCGGCGTGA ACACGGTGGAGTGGCTTGACCTTGGGCGGAGCAACCTGACAGGAAGCATC CCGGAGAACCTGGGAACGCTGCCGAACCTTCGGAAGTTGTATCTGGCAGG GAACCAGCTGGTTGGGCCCATACCCTCCAGCCTGGGCGACATCGCCACGC TGTCGGACCTCAGCCTAGCGGGAAACGAGTTGTCCGGAGCCATTCCCGAT AGCTTCGGCAACCTGACGCTGCTGCGGTATCTCAGTCTAAGAGACAACAA GCTAAGCGGTGCCATCCCGGAGTCTCTGGGGAACCTCGTCAACCTGGAGG AGCTCTGGTTGAACGCCAACCAGATCGAAGGCGCTATCCCGGCGTCTTTG GGCAACATGGCCACCGCGCGCAAGGTCTTCCTGAACAACAACTGCATCGA GGGAACACTGCCTGCCACGCTGGGCAACCTATCCAGTCTACGGATCTTAA GCTTGCGTCATAACCGCCTGACGGGAACGATTCCGCCCGAGCTTGGTCGA CTGAGCCAGCTCAAGACTCTCTACATGGAGAAGAATGAGCTGGAGGGCAA CATCCCCGACACCCTGGCGAACCTGGCCTCCCTCAAGGAGTTGAACCTGC TGGGCAACAAGTTCCAAGGCAAGGCGCAAACGCGTAACCTCCTTATTGGC CGCCTCCCGAACTGCGTCGTGTACGTGTGAGCGTGTAATCTTGTGGGGTT GTGGGTAGGTCTCCCTCCCCTCCCTCGCCGTGCCCCTGCTGACCACCAAC CAAGGGCACTTGTGCCGTGGGGCTGAGGTAGGTAGGAAGTAAGGCGTGTG CGTGTGCTTGATGGGGGATGCCCATGTTTCTGCTTGCCTTGGGCGTTCGA ACATTTTAAGAGCATCTCTCCGTGGGTAACGGAACGGGGGGAGAGGGAAC GGGGGGGAGGGGTCCGTGGATGGTGTAGTACCAGACGACCCGAGCGCCAC GCCGTTGGCGGTTGAGGTTGTGTTGCGTTTCTGCGGTCGTACTACGTCGT TTGTTGAGGCTTGTGTTTGGTCTGGGTTAGGAGAGGGTTCGGGAAGAAGG TCGTGTTGGTTTGTGCCGGAGCCGCATGCGTTCGTCAACGTCCAACCTGT CAGCCGAAGCGGTCTGAGGTCGTGTGGAGTTGTCTTGCGTTGTTGCGGCT TCGTACGGCGGCGATGGCGCCCACGTCGAGCATTGCTCCCCGACCCCCGG CGGCTGAGAGAACGCGTTAAAGACGCTGGGATCTGTTGGTTGTGCATTTA CATGTATTTCGGAATCCTCCGACGAATAATGGTTTCGTTTCTCGTGACTT TGCAATCTGTTTGACAAACGAGAGACATTTTTTTCCTTGGGGGAGGACGG CTGAAACAGGTAGCTCGGCATTAAGGTACACTAGATTTGGCCACCCCGCA CGCGCGGGTGTAGGTCGCAGCATGAAAAGAGAAAAGAAAAAGGCCGGCGC CGTTGTTTGTGCGCAGGTGGGTGTTTATTTTATGTTCTTTGTGTGGTGAA ACACCTACCATAGCTCAGCGATTTGACGATAATTTTTGTCATGGCGTATG CCCGCGCACGTGCCAGACACTGGACCTTCGAAGGGTGGGTACTCTAAGTA TGTGGTATTATGCGTACGTCTTGTCTTGTCCCATGTATGCATCGATGAGC CTGAGTTTGTGGCCGGGATAGTTTGTAGTTGTACGCGGTGAGGACAAGGC ATTATTTTTTTCCTCCCTGCTCAAGGGCGCGCCGCATGTATCGTACTGGG GCTCGGGGATAGAGCATACCTTGCCGCAAAGCGCGTCAGCTCGGTACTTG ATACAGCAGATACCGTGTGTACCCGAGGTTGACGCGTGTAACATTTTCAA GAGTCGTTGGAGCTGGCCGCCCTGTGGCGTGTACTACCTCGGCCCTTCCT GGAGAAGACGGTATGTGGGGGAGAACGTTTTTGTACCACCTTAGGCCAAA GTAGGAAGGAACGATTGACCATCGGTGATCAGTCCTGTGTGAACAATGCT CCGTCCGAGGATGCGTGGTCTAACCGCTAAAAGGCATGGGGGAAAAGTGA GTATGCCCCGCGGGGGGGGGGG back to topprotein sequence of Ec-00_002000.1 >Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=460bp
MDYCHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFATAGAA GGTIGPPTTGGGGSSGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRD VFKMGASCRQLMRMLLAVGGGAEGGAGAAAGEPQQQGAAAVGVVNGSNGG GAAAGAGVGGAAAAGVAAAAAGAPAGPLLVHIRGSKEFLSYFRALEQNAA WTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSI PENLGTLPNLRKLYLAGNQLVGPIPSSLGDIATLSDLSLAGNELSGAIPD SFGNLTLLRYLSLRDNKLSGAIPESLGNLVNLEELWLNANQIEGAIPASL GNMATARKVFLNNNCIEGTLPATLGNLSSLRILSLRHNRLTGTIPPELGR LSQLKTLYMEKNELEGNIPDTLANLASLKELNLLGNKFQGKAQTRNLLIG RLPNCVVYV* back to topmRNA from alignment at chr_00:2217787..2229411+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=11625bp|location=Sequence derived from alignment at chr_00:2217787..2229411+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGGATTACTGCCACGTTGACGAGGGCTCTGAGGCTCAGAACATCATCCG
CCAGGCCGAAGCACCACCCGACAGCCCCTTCCGCCCGCGCTTCCGTCGAC
GCTCGGGCGAGATCGCCATCCCAGCAGGCTTCGCAACAGCAGGGGCGGCA
GGAGGAACGATAGGTCCGCCAACAACCGGAGGAGGGGGCAGCAGCGGTAC
GGGCAGCAGCAAGAGCGATGTCCAGCGCATCAAGCTGGGCGTGCTGCTGG
GGAAGAGGCCCGTGGCGGACGCCTTGTCGCGCTTCCTGACCCTGCGAGAC
GTGTTCAAGATGGGCGCTTCCTGCCGGCAGCTTATGAGAATGCTCTTGGC
CGTGGGCGGTGGGGCAGAAGGCGGGGCGGGCGCTGCTGCTGGGGAGCCGC
AGCAGCAAGGAGCAGCGGCAGTTGGCGTTGTGAATGGATCGAACGGCGGT
GGAGCTGCAGCAGGGGCAGGGGTGGGGGGGGCTGCGGCCGCTGGTGTTGC
TGCTGCTGCTGCTGGCGCGCCTGCAGGGTGAGTGTGGACTGGCAAGTCTG
GCTCCGTAGCGAAGACTGCGTTTTGAGACGAGACATGTTCTGCGACACAC
AGCATGTCACCGGCTGTAAACCATTCCTTGCACACAAACACACTGCAATC
CCCGAGTGTATTATTTTGGTCTGCGGTTGCCGGCGAAAACGTATATTTTC
TCTCTTTCGGCACGGGAAAAGGATTCAAGTTGATGTTCTGTGATGACTCG
AAACGATGAAATTTTGCAGACAACAGACGTTGCTTCCTGCGACGAGCCCA
CTCAGTTATTTGTTCTGAATGGTTCTCACGGACTTCCGTAAGAGTCGGAG
AGATGGCGCCCCCGTGTTAGCGTTTTTGTATAGCGTATTTCTCCACAACC
AGGGGGGTACCACTGCCGAAAAGGGTAGTTTTGGAAACATCTCGTCGAGA
GCTTTCCTGAGAGGTATCGGTTGGTGTTCGCACCCTCCTAGTTGAGGAGA
AATAGGGCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCCTCCCTACTTGTGGAGAAATAGGCTAAACGAAAA
CGCTAACATGGGGGTGCCATCTCTCCGACTCTTACGGAAGTAAGGCCTGG
TTTCAGAGGTCGTTCGTTCGGTCCTGCTGTGCGTATGTGGGTACCATTGT
AGAAGCAGAGTGAGACAGCTCGAAACATGTAATTGCGTGAGCGATATGCT
TTCCCAAACTGCATATGGTGGCGGATGTGCCGTGCAGCGAAGGAATAGGA
ATGCAGCAGACATCAGTTCTTCCCCACCCTATTGCACTCGCTGCTCCAGC
ATGCTGGTGGTGTTTTCTCCTCCTGCCTTTATGCTGTGTATCGCAGCAGG
GATCACGCAATCAGAAGTGTAGGTGGTGGGGGGGGCGTACTCTTATGTTT
TGCATGCCTTAGCGGTTAGACCATTGACCGCGCGTCCTCGGAGCATTGTT
CCCACAGGACCGATCACCGATGGCCAATCGTTCCTTCCTACTTTGCCAAA
GGTGGTGGTTGGGGGGCGTTCTATAAAGCCCAACGATGTGTGTGGCACTT
ATGTAAGGGCGCGGCGGAGATGCGGGCGGATCTCCTCTTCAAAATAGACG
AAAATCGCCGCTGCATATCTTGGTTTTGCAATTCTACTCCAGTGTCAATC
TACCATCGCACCCAGACCGCCCACAAATGTCGCGAGTGTGCAATATATGC
ATATAGCTAGTAGGCTGATAGCGCTTGTGATACACCACTACAGATTTTGG
CGGTCCGCGATTTCCAAAGTGGCCAAAGCAGAATTTTGTATGAAGCCGGC
TTCTAGAAAGGTTTTAAACAATCTCTGGGAACTTTCGCACACGAGCACCT
GGTATCAAGTGGCACGTTGTTCATCGCTTTCTTTTGGGTGATCAAGTGCC
GACACGACAAACAGGAGGCAAGAGAGAGCACGTTTGGAGCGCCACCCGTC
CGCCCTCACCGCGCATTTTATGTTTATTAATCCAAGCAATCGGTCGAGAT
AAGAAATAGTCGGTGATTGTGTTCGAGAAGCACGCACACTCATCGAAACT
TCCTTTTCACGACGGGTGCACCAGCCTAGCTGTCACCACTGCTGCCTTCT
CCCTATAGAAGCCGAAATCAAACCATTAGACTAGTCAGCTGTCTCTGACT
AGTCTAATGGTTTGATTTCGGCTTCTATATCCCACACTCATATGGAAAAG
GATATCCAGTCGCTGTCCGATTTTCAAACGCCTTAAGCACTTCTGGTTGA
GGTTAGACCCACGTATACATGATACCCAGGCCTTCAATTTGACTACGGCG
ACGACTACATATGTAGGATGCGCGACTCAAGTCGGCGGTCACACGCACTG
ACGTAGGCGCTGGTTCGTCGCCAACGTGTGCTTGAAGCGTTCGAAAATCG
GACCCAGAGGGGCATCCAAAATCTTGCTTGTAGCACACCGAACTCGATGA
TAGAAGGATCGCTCCGAAAGGTCGCTGATGGCGAATCTGTACCATGGTGG
TGTATCACAAGGACTACAATCCTAGCTACTTTCAATAGCTACTTTCAAGG
GGTGCTTCGCCCTCCCCCCCTGTGGGGGCCGGTCTCGTGTACTACCCGTA
GGCAAAGAAATGGAAGGAAATGTTTGAAGGTACTACTGTGCAGTTGTTGA
GAAGATCGGCAACTGGTGTGAGTAGATCGAGGATCGGATAGATACTAATA
TTTTGCTGTATGTAGGTTCGAATGTTCGCATGGTTTGGAAAAAAGTGCGT
CATATCTTAGTCATGGTGCGGGAAGATGTTGCACAGGGCTCATCCCGGGG
CACACATGCACACGAGATGGTGATTCTGCGTGCGTGTGTGCCAAAAGTGC
CTGTTCTGTGTGTTAGTCTGGCTGATGCTATGGCCGTGTAGGACTACAGC
AATGCAGCAGCAGCAACATTAGAAGACGACCTCGGAATCTAGCAAGCTGC
GTTTGTTTGTTTGTTTCTCTTCCCATTTTCAGGAAGAGACGTTTTCCCGC
TTGGCTCAACAGCAGCAGCAGTGTTTCAGCAGTAGTCCACAACTCTCCGT
GCATGGCTTAAAGTGCCCGTGTACCATCTCGTAAGTCATGTACAAAAGGT
AGACGTACACCATGAGTACTTGTGTGTTTGCTGTGGTACAGATCACACAC
ACGTTCAGTTGAAGTTCGTTCCCAGAAGCACCGGCGCGACAGAAAGAGAG
AACGTGCTTCGTACCTACTTGGGGGACGAAAGTGCCCGTGTCCGTGCGGG
TAGCTGTCGTGCTGCAGGGCGGGCTACGCGCGCGGGGCGCGCTGTGGGTA
CATCATTCCCGTCCGGGAGCCGCAGGAACGAAAGAAAGACTGAGAGTTGT
GAGCGGTATAGAGACTGCTGACAGCAGTTGTGAGCGAGGTAGAGACATAC
GCTGCCAATATGCTATATTGTGACTTGCTGTGCCTCCGTTATTCGTCATT
TAGACTAAATATGACAATAGCTGATTCTGACGTCATACAAGCCGGCAGAC
ACAACCACAGAGAACCAAAAAAGCTTGATTTCCAGAAAAAAATGCCGGCG
GTCCAGCGCCTGCAGCTCTTGCCACAGCGCACCGCGTGGCGCGACACGCT
CGGGACGTGCTGAGTACGTTCTTTCCGTCCGGGAGCCGAGAGCGACAGAA
ATCGGTTTCAACGGCGACCCCGACAAAAAACGGATGCACCAGAGAGCAGC
ACGCGTGAACCGCCAAAAGGAAATCCTACAGATGGATATTCTAACATTGC
ACACTCGCGACCTCTGCGGACGGTCCGGGCGCTATGGTAGATTCGGACTG
CAGGTAGACTTTGGAAACCGAAGACATGCAGTCGTTTTCCTAAAAAAAAT
TAGGGGGAGAGCTACCAACTCCACCGCTACCTCAAGGGGTTCTTGCCAAA
TCGATTTTGACTGATGGTTTCGAAGACGACCCAGGTTAAACACCCAGCAA
CCAATCACGATACACAAAGTCGGGGAGGGTCGCACAGTTGGGACTCGTCT
CCAACAGCATACTGTGTCACTAGGACAAAACTCTCCACCCCCCTACAATG
AAGACAATCAGGCGACACGGCAGGTGCTCCGATAAGTTCATTGCGTTGCG
GAGTCCCGACCTTGGCACCTATTCCAGCAGAGGACATCATCGGGCAGTGA
CGCGCGCGTTGACACGCCCAGATCTTGTTGCTGGGGCCGTGCTGTTGAAG
GCTGCAGCTGCCGTCCGAAAAGTCCGCAAGTCTGGGTCCATACCATTCAT
GATCCACGGCTGTACGCGCCGTCACAGGCCAATCAATCCCCCGAACTGCT
GGCCATCCAAGGAAAGCTAGTCGTGCGAGCTACCGCTGTAGATTACTGCT
TCTGTAGACCAGCGGTTGTGGGGTTGGGTCTGCGTCGGCGCATCCAGCAA
TGCATGGTTGCTTGTGTGGACCCAGACCTGCCAACTTCACGGACCGCAGC
TTCAGCCTTCGACAGCACGGCCGGCCCCGACAACAGATCTGGGCGTGCCA
ACGCGCATGCCGCTACCCCATGATGTCCCGTCTACTGGTACAGAGGAGCA
ACGTCGGGACTCCGCAAGCCGGAAGGTTGCTTTTCGATTTTTTGGCTACC
AAATGGTCTTGGGTTTATAGCGTAAATAGAAACTTTTGTGTTGAACAGTG
GCCTGAGGTCCCAAACGAGGTTGCGCCTGAAGAGCATGAGACCTACCGTC
CGGATGTCGTGTTTCTTATGATTCACGCTCGGCTCTTAGCCCTGCTGTAT
CCCACTATGGGTGCGGTCTTCGAACCTGTTGGTGTGTCGTACTCTTTGAA
TGCGGGGAGTTTCTGACAGTCCCGTGCAGTCAACGAGTACGACACACGCC
AGACAGAAGACCTCCTCCATATGGGGACGCATAGCTAGGAGCCGAGCTTC
AAGCATCAGAAGTACGAGATGTGAACCGTAGGCCGCATGCTGTCCAGGCG
CAAGCTCGTTCTGGACCTCAGGCTGACGACAAACGAGTGGCTTGCCAACC
CCGGCAATATATTTGTATTCGCTAAATCCCAAGACTAGCAGGAGGTCAGA
GAATCGAAAACAACCTTCCGGCTTGCGGGGCCCCGACGTTGGACGTCTGT
TCCAGTAGGGGGGACATCACCCGGCATGCGCGTTGGCACGCCCAGATCTG
TTGCTAGGGCTGCGCTGTCGAAGGCTGCAGCTGCTGTTCGAAAACTCGGC
CAGTCTGGGTCGATACCATTCATTATCCACTGCTGTACACGCACTCACAG
ACCCAATCCCCCGAACTGCTGGTCATTCACGGCAGCTAGTGGTGTGAAGC
TACCGGTGTAGACCACTCCTGCTGTAGACCAGCGGTTGGGGGGGGTTGGG
TCTGCGACGGCGCGTATAGCAGTCGATCGTGCGCGGCCCAGATTTTTGGA
CATTGCGGGCCTCAGCCGCAGCCTCGCCCTGGACGGCGCGGCCACAGCAA
CAGATCTGGGCGTGCCAACGCCCATGCCGCTGCCCCTTGATGTCCCCTCT
GCTGAGTTCCTGTGTATTGCCCCATTCTGTCCTCGACTGTCTTCCCATGA
ACACATCCTAGGGTCTGAGAATTTGTTAAACGTCAAAAGCAGACGCCGTG
TCGCCTGTTTGCCTTGAATTTGGAATACTGGAAGATTTTGCATTATTTTA
GAAAGAAAATGTGATTGTTGTGCTCGTCGTCTCCGGCCAAAGGCTGACTA
CCCCGTCCCCCTAGCCAATGCTGGGTATCTACAGTCTACGGCAGCCAAAT
ACCTTTGCGTGTCTTGCGAGTCACATGCGTCCTTTCTCGGCAAAGTGGGG
GGCCCTGTTTTGTGCCGGTGTTTTCGGCGGGCACACACTGAATTTCCAAG
TTATTCTCAATCCGGTACAATATAGTGCTGGTGAATTTTCTGGGCACACA
CCGGCACTAAACAGGGACCTCTACTTTACTGCAGTTGGACACCCCCATTT
TCCGGGTGACTCAACGACGTCGTTGAGTTGCCCCGCTGCTGTTTACTCTA
AGTCGCCTGAAAACCAGGAACGTGTGTTTTCCAAGGCCCAAGAACAGCTG
GCATCGTGCCACACCCACCGTTAGCCTTGACCATCTAGATACATCTGAAC
ACTTGCTCACTTGCCGGCTCCATTTTTGTGACGTTTCGTCTCCCCTTTTG
TTCCGTTTTTCTGTTCCCAGACCCTTGCTGGTGCACATCAGGGGGTCGAA
GGAATTTTTGTCGTATTTTAGAGCGCTGGAGCAGGTGAGAGTGGTCTTGA
GGAAATGCCCGCCGTTGTTTTGAAGACACGGGGTTGCGTCGCTGCGTAAA
GTGTAGTCGTCGTGTCCCCATTCGGCTCGCGTCCTTGATCACCGAGTGTT
GAGGCATCTGGATCGCAATTTGTTCGATTCTTCATTTGGTGCTCCTGGGA
CACACGCTACTGTATATACGCAAACCCTTTTTCCGATCGTGCGTTGGAAG
TCGGGTGAAAGATGGGATCTCGTTTGCGTTTTGCTTACCGTTGTTCCTTC
CTCGTCGGCGTAGCAGCCATATTGTGAGGAGCGCGCGATTTCTGCGTTTC
TGCTCCCCCGCCCTTCCCGTCTCTATGAGGGAACCCGCCCGTAGACCCTT
CGTCGTACATGCTGCGATTTCTGATCCCTGGCCTGCCTGTTGATTGGAAA
CTCCTACCTTCGAACCTCCTCCTTGGTTATTTTGAAAACCAACAAAACAG
AACGCAGCGTGGACGCAACAACGCATGATGGCCGTGTCTATCGTGTTGGA
CTATCACGACTCCATCGACGGACCCATCCCTTCTTTCCTTGGAGGGGGAG
GCGGCGTGAACACGGTGGAGTGGCTTGACCTTGGGCGGAGCAACCTGACA
GGAAGCATCCCGGAGAACCTGGGAACGCTGCCGAACCTTCGGTAGGGCGG
ATAGATCGATCGATCACGCTGTTTTTGAGCTTGAGCTTGAGGTTTGGTTT
TGTTTGCCGAGAGATGTAAAAAATAAAATCTCGCTGGCGAGTAGCGGCGG
TGATAGTTGTTGGGCGTTACCGCGTAACGAGGTTGAAAGTATGTTCTGGG
TGCACTTGGATACGAGATCCGATCTGAGGGGTATGCGTGTGTTTGGGGTA
TGTGTGTGTTTGGGGTTCAAGTGCGGGATGCCTCGAGCGAGCACGCACGT
ATAGTTTATTATGTTGGTTGTGTTTGGTGTGTGCTGGAAGGAGCATGGGT
ACGTGTTAATAAAGCTTTATGTCATAAACATCGGTCCTGGGTTAGCCTAG
TCCCCACACTCAACCCAAGTACCGCGGGAAGGCGGGGTGGCCTTTTCTCA
CTCCTGCCGAAAGTAAAGGCCTTTCGTATCCACGCACCATGTAGCGTTCC
TTGATAGTACTTGCGGTGATGGTTCACATTTGACATTTTGTTTGATCTTT
TTTTGTGTGTTTGGTTATTTTCCTGGCATGCAGGAAGTTGTATCTGGCAG
GGAACCAGCTGGTTGGGCCCATACCCTCCAGCCTGGGCGACATCGCCACG
CTGTCGGACCTCAGCCTAGCGGGAAACGAGTTGTCCGGAGCCATTCCCGA
TAGCTTCGGCAACCTGACGCTGCTGCGGTATCTCAGGTGCGTCTTTCTCT
CTCTCTCTCTCTCTCTCTGCTCAACTGGTGCTCTCTGCTTCGTGTTTTGC
TCCACGCAACACTGGTGCGGATAATCGTATTGATCTTTGCCCTGTGCTAC
CGGCTGTTTAGTGTTCACTCTCTGGAGCACATTCATCGGTTTTAGAATCG
CACAGGGAGGGACCACAGACGCCCATTACCTATTTTTGCTCGTAGTAGTT
GATCTTCGAACCTAATTTAGCAGCGGCCCGTTTTCCAAGACTGAGGAAGA
AAAATATTTCGGCGTGCTTGGGCGCACCATTGCTGCCAGCGAAACCGCGG
CTCTTCAATGCTTGATTGCGCACGAGGGGTGGTCAGGGTTTGTTGCGCGT
CTTTAGCAGTGTTGAAAATAGTGGTTTCTGTATTAGGCCGGCGAAATCGC
GTGACACGCGGATTGAACGTTCACGTTGTTTCAATACTCTTTGAATAGGG
CAACTGGTGCCGTGATTTTAGTCGGAATACGGGAAATCTTTTTCGGGATT
AGCGGTGGGAAATTGCACTCTGTCAGGGATACGCCTTGAGTCTTTTTTAA
AGCAACACCTACATACTTTGCGGACGTTGGCTACATTATCCTTGGCGTTC
TTCGTGCCCAAGCTGCATCTACTATTGTGCCGCCGAGAGATACCAAAGGG
GATTCGGCGCGTTAGCATCTATCCCTCCGCCATGCCTTCCAGCGTTATCT
TTGTGATATTTTTTGTGTCTGACGTTGTGTCTGCACGTTCCTGCGGTGTT
GTCGATCTTGTGTTTTTTCCCCCCCGCAGTCTAAGAGACAACAAGCTAAG
CGGTGCCATCCCGGAGTCTCTGGGGAACCTCGTCAACCTGGAGGAGCTCT
GGTTGAACGCCAACCAGATCGAAGGTGCGAGTCATGAAAACAACAATTCA
TCATACAAATGTAGCCCCACTTGTCGGTGCAGCAGGCGAGGAATATCCCT
CCCTTTACGGCAGTGGCGACAGCAACTACAGGAGATAATTGTAACCGCCA
TGGTGTTGACGCACCTACGGAGCCACCACACGGTTGTGGGTCTATCTACA
TCACGTGTTCTCAACTTGTTTTGCGGCATTTTCCGTTCTTGCGTTTGGTT
TTGTATGTGATGCGGTGTTGGTTGATGCAGGCGCTATCCCGGCGTCTTTG
GGCAACATGGCCACCGCGCGCAAGGTCTTCCTGAACAACAACTGCATCGA
GGGAACACTGCCTGCCACGCTGGGCAACCTATCCAGTCTACGGGTGAGCT
GGAAGCAAGCACGCTCAATAGAGGAGAATGTTATGCTGAGGGAGGGGTGG
GACACCGGTTTGTAGGATACGGTAGTGGTCCCACTATTATGCTTACAGGT
GCCAGCCGCTTTGAACCGGTATTGTAGCGGGCAACCGGCATTATTATTCA
AAAGTATGGGACATCTTGAATATTCCATCTGCGTCACGCAATTTTACTGT
ACACGTACTGAATGCTGAAAACTAGGACGTATTGATTTTAACGCCGTAGT
CAGCACGTCCCTCGGGGGTTCCGTCGCTATAGCCTCCGTCAACCCCCCCC
CCCCCCCAACCCCCCAGAAAAAAATGTTGTTGTCCACTTGAAACCGACAT
GGTGTGTTGTCGCTTTCGCGGCAGATCTTAAGCTTGCGTCATAACCGCCT
GACGGGAACGATTCCGCCCGAGCTTGGTCGACTGAGCCAGCTCAAGACTC
TCTACATGGAGAAGAATGAGCTGGAGGGCAACATCCCCGACACCCTGGCG
AACCTGGCCTCCCTCAAGGAGTTGAACCTGCTGGGCAACAAGTTCCAAGG
TGTGGAAGGCAGCGGTAGTGGTAGAGGTGATATTTCGTGTTGCTGTTTTG
GCGCGTGGGGTGTCGTCCTAGTTGTGACAATTGTTGTTGTGACATCGACA
AACGTTGCGCTTAACACGCCATTTTTGTTTTCTTTCGGAAGGCTAAACAC
CGACTTGGTCCGTTGTGGTCAATGGAGGGTTTTGTCGAACGGTGTGTAAC
AGCTGGACAGACCGTCGAGCGTGGGCTGCGCGGTATAGTCGCTACAGTAG
CAACTGTGGCAAAGGCGGTGCACGCAACTCTGGTTTTGCTTGCGGCCACT
GGTTGGCGTGCTCCCTGCACTGCTGTTGGAGAGACGGGTGTGCCATGGGG
GGAGGGTGGAAAGCTTGTCTGAAGTTTTCTGTCAAGTGGTGCCGCAACTT
GAAATAGTTTATACCCCCTACTCGCACACAATGCTCCGTCCTCTGGAGGA
CGCGCGGTCAATCGGCCCAACCGCTAAGGCATGCAAAACATGAGAACGCT
CTCCCCACACACACAATCCCTCCACCTATCACGCGCTCCCGTCGTCTTGC
GTCTGCCTGACCTTGCGTCCTCAATCCCTCGCCTCTCGCTCGCTCGCCGC
TTTTTTTTTTTTTTTTGGGGGGGGGGGCGGGGGTGTCGTTTCCCCTTCTT
TTTTTCTTGCTGTCTTACCAGGCAAGGCGCAAACGCGTAACCTCCTTATT
GGCCGCCTCCCGAACTGCGTCGTGTACGTGTGAGCGTGTAATCTTGTGGG
GTTGTGGGTAGGTCTCCCTCCCCTCCCTCGCCGTGCCCCTGCTGACCACC
AACCAAGGGCACTTGTGCCGTGGGGCTGAGGTAGGTAGGAAGTAAGGCGT
GTGCGTGTGCTTGATGGGGGATGCCCATGTTTCTGCTTGCCTTGGGCGTT
CGAACATTTTAAGAGCATCTCTCCGTGGGTAACGGAACGGGGGGAGAGGG
AACGGGGGGGAGGGGTCCGTGGATGGTGTAGTACCAGACGACCCGAGCGC
CACGCCGTTGGCGGTTGAGGTTGTGTTGCGTTTCTGCGGTCGTACTACGT
CGTTTGTTGAGGCTTGTGTTTGGTCTGGGTTAGGAGAGGGTTCGGGAAGA
AGGTCGTGTTGGTTTGTGCCGGAGCCGCATGCGTTCGTCAACGTCCAACC
TGTCAGCCGAAGCGGTCTGAGGTCGTGTGGAGTTGTCTTGCGTTGTTGCG
GCTTCGTACGGCGGCGATGGCGCCCACGTCGAGCATTGCTCCCCGACCCC
CGGCGGCTGAGAGAACGCGTTAAAGACGCTGGGATCTGTTGGTTGTGCAT
TTACATGTATTTCGGAATCCTCCGACGAATAATGGTTTCGTTTCTCGTGA
CTTTGCAATCTGTTTGACAAACGAGAGACATTTTTTTCCTTGGGGGAGGA
CGGCTGAAACAGGTAGCTCGGCATTAAGGTACACTAGATTTGGCCACCCC
GCACGCGCGGGTGTAGGTCGCAGCATGAAAAGAGAAAAGAAAAAGGCCGG
CGCCGTTGTTTGTGCGCAGGTGGGTGTTTATTTTATGTTCTTTGTGTGGT
GAAACACCTACCATAGCTCAGCGATTTGACGATAATTTTTGTCATGGCGT
ATGCCCGCGCACGTGCCAGACACTGGACCTTCGAAGGGTGGGTACTCTAA
GTATGTGGTATTATGCGTACGTCTTGTCTTGTCCCATGTATGCATCGATG
AGCCTGAGTTTGTGGCCGGGATAGTTTGTAGTTGTACGCGGTGAGGACAA
GGCATTATTTTTTTCCTCCCTGCTCAAGGGCGCGCCGCATGTATCGTACT
GGGGCTCGGGGATAGAGCATACCTTGCCGCAAAGCGCGTCAGCTCGGTAC
TTGATACAGCAGATACCGTGTGTACCCGAGGTTGACGCGTGTAACATTTT
CAAGAGTCGTTGGAGCTGGCCGCCCTGTGGCGTGTACTACCTCGGCCCTT
CCTGGAGAAGACGGTATGTGGGGGAGAACGTTTTTGTACCACCTTAGGCC
AAAGTAGGAAGGAACGATTGACCATCGGTGATCAGTCCTGTGTGAACAAT
GCTCCGTCCGAGGATGCGTGGTCTAACCGCTAAAAGGCATGGGGGAAAAG
TGAGTATGCCCCGCGGGGGGGGGGG back to topCoding sequence (CDS) from alignment at chr_00:2217787..2229411+ >Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1380bp|location=Sequence derived from alignment at chr_00:2217787..2229411+ (Ectocarpus species7 Ec32 male_plus_femaleSDR) ATGGATTACTGCCACGTTGACGAGGGCTCTGAGGCTCAGAACATCATCCG CCAGGCCGAAGCACCACCCGACAGCCCCTTCCGCCCGCGCTTCCGTCGAC GCTCGGGCGAGATCGCCATCCCAGCAGGCTTCGCAACAGCAGGGGCGGCA GGAGGAACGATAGGTCCGCCAACAACCGGAGGAGGGGGCAGCAGCGGTAC GGGCAGCAGCAAGAGCGATGTCCAGCGCATCAAGCTGGGCGTGCTGCTGG GGAAGAGGCCCGTGGCGGACGCCTTGTCGCGCTTCCTGACCCTGCGAGAC GTGTTCAAGATGGGCGCTTCCTGCCGGCAGCTTATGAGAATGCTCTTGGC CGTGGGCGGTGGGGCAGAAGGCGGGGCGGGCGCTGCTGCTGGGGAGCCGC AGCAGCAAGGAGCAGCGGCAGTTGGCGTTGTGAATGGATCGAACGGCGGT GGAGCTGCAGCAGGGGCAGGGGTGGGGGGGGCTGCGGCCGCTGGTGTTGC TGCTGCTGCTGCTGGCGCGCCTGCAGGACCCTTGCTGGTGCACATCAGGG GGTCGAAGGAATTTTTGTCGTATTTTAGAGCGCTGGAGCAGAACGCAGCG TGGACGCAACAACGCATGATGGCCGTGTCTATCGTGTTGGACTATCACGA CTCCATCGACGGACCCATCCCTTCTTTCCTTGGAGGGGGAGGCGGCGTGA ACACGGTGGAGTGGCTTGACCTTGGGCGGAGCAACCTGACAGGAAGCATC CCGGAGAACCTGGGAACGCTGCCGAACCTTCGGAAGTTGTATCTGGCAGG GAACCAGCTGGTTGGGCCCATACCCTCCAGCCTGGGCGACATCGCCACGC TGTCGGACCTCAGCCTAGCGGGAAACGAGTTGTCCGGAGCCATTCCCGAT AGCTTCGGCAACCTGACGCTGCTGCGGTATCTCAGTCTAAGAGACAACAA GCTAAGCGGTGCCATCCCGGAGTCTCTGGGGAACCTCGTCAACCTGGAGG AGCTCTGGTTGAACGCCAACCAGATCGAAGGCGCTATCCCGGCGTCTTTG GGCAACATGGCCACCGCGCGCAAGGTCTTCCTGAACAACAACTGCATCGA GGGAACACTGCCTGCCACGCTGGGCAACCTATCCAGTCTACGGATCTTAA GCTTGCGTCATAACCGCCTGACGGGAACGATTCCGCCCGAGCTTGGTCGA CTGAGCCAGCTCAAGACTCTCTACATGGAGAAGAATGAGCTGGAGGGCAA CATCCCCGACACCCTGGCGAACCTGGCCTCCCTCAAGGAGTTGAACCTGC TGGGCAACAAGTTCCAAGGCAAGGCGCAAACGCGTAACCTCCTTATTGGC CGCCTCCCGAACTGCGTCGTGTACGTGTGA back to top
Synonyms
The feature 'Ec-00_002000.1' has the following synonyms
Synonym |
Esi0013_0194 |
Esi_0013_0194 |
|