Ec-00_002000.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_002000.1
Unique NameEc-00_002000.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length460
Homology
[Close]
BLAST of Ec-00_002000.1 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 1.620e-115
Identity = 209/268 (77.99%), Postives = 213/268 (79.48%), Query Frame = 0 
Query:    1 MDYCHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFATAGAAGGTIGPPXXXXXXXSGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLMRMLLAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 268
            MD  H D+GSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGF T  A  GTIGPP        GTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQL+RMLL VG                                  XXXXXXXXXXXXXX    GAPAGPLLVHIRGSKEFL+YFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIP+FLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MDNWHADDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAA--GTIGPPTTEGGGSGGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLVRMLLTVGGGAGAAGEPQQLGAAAVGVVKGSNGGGAAAEVGTXXXXXXXXXXXXXX----GAPAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 262
[Close]
BLAST of Ec-00_002000.1 vs. uniprot
Match: D8LEE5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.560e-31
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:  206 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 268
            MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 63
[Close]
BLAST of Ec-00_002000.1 vs. uniprot
Match: A0A836CHX9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.650e-12
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 0 
Query:  173 APAGPLLVHIRGSKEFLSYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSN 245
            A   PL  HIRG  EF+++FRA E   AW   R+  +SI+LDY DS+ GPIP F+G    V ++ WLDLGRS+
Sbjct:   25 AAGSPLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQ---VKSLVWLDLGRSD 94
The following BLAST results are available for this feature:
BLAST of Ec-00_002000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KR97_9PHAE1.620e-11577.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEE5_ECTSI2.560e-31100.00Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CHX9_9STRA4.650e-1250.68Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 329..353
e-value: 16.0
score: 11.6
coord: 257..281
e-value: 37.0
score: 8.6
coord: 377..401
e-value: 2.5
score: 17.1
coord: 305..328
e-value: 76.0
score: 6.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 357..414
e-value: 9.2E-7
score: 28.5
coord: 283..342
e-value: 1.9E-9
score: 37.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 228..345
e-value: 5.1E-37
score: 129.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 346..452
e-value: 1.3E-29
score: 104.9
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 326..445
coord: 190..326
coord: 261..356
NoneNo IPR availablePANTHERPTHR27000:SF584LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2coord: 326..445
coord: 261..356
coord: 190..326
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 233..441

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2217787..2228019 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002000.1Ec-00_002000.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 2217787..2229411 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_002000.1 ID=Ec-00_002000.1|Name=Ec-00_002000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=460bp
MDYCHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFATAGAA
GGTIGPPTTGGGGSSGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRD
VFKMGASCRQLMRMLLAVGGGAEGGAGAAAGEPQQQGAAAVGVVNGSNGG
GAAAGAGVGGAAAAGVAAAAAGAPAGPLLVHIRGSKEFLSYFRALEQNAA
WTQQRMMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSI
PENLGTLPNLRKLYLAGNQLVGPIPSSLGDIATLSDLSLAGNELSGAIPD
SFGNLTLLRYLSLRDNKLSGAIPESLGNLVNLEELWLNANQIEGAIPASL
GNMATARKVFLNNNCIEGTLPATLGNLSSLRILSLRHNRLTGTIPPELGR
LSQLKTLYMEKNELEGNIPDTLANLASLKELNLLGNKFQGKAQTRNLLIG
RLPNCVVYV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf