Ec-00_001770.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001770.1
Unique NameEc-00_001770.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length152
Homology
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BLAST of Ec-00_001770.1 vs. uniprot
Match: D8LEC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC9_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 3.490e-96
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1 
Query:    1 MVRSANVGSKIAGMFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATANEKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRATL 453
            MVRSANVGSKIAGMFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATANEKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRATL
Sbjct:    1 MVRSANVGSKIAGMFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATANEKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRATL 151
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BLAST of Ec-00_001770.1 vs. uniprot
Match: D8LEC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC0_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 8.750e-53
Identity = 119/231 (51.52%), Postives = 124/231 (53.68%), Query Frame = 1 
Query:   40 MFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATANEKTMLIEAQRD--------------------------------------------------------------------------------------------------LQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYD 438
            MFSRAKVLLPGYRRAAKELAERQQL LEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGK QADRESALVHTVEESRAETATANEKT   EAQRD                                                                                                  LQRLGM  LN A++KEE KT+KAERD+ATCRAKY+
Sbjct:    1 MFSRAKVLLPGYRRAAKELAERQQLELEFAAYKWKMAVGGVAFTVLILILVLSMVILLRWWGKHQADRESALVHTVEESRAETATANEKTTRFEAQRDTARSACYEFQLAVVENRADSHRASAESARVKTQLQTRTKLLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNVQTQLQRLGMRSLNAALMKEEGKTEKAERDMATCRAKYE 231
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BLAST of Ec-00_001770.1 vs. uniprot
Match: A0A6H5KTB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB2_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.330e-7
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  337 QRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRATL 453
            QRL ML LN A++KEE KT+KAERDLATCRAKY+ RATL
Sbjct:  124 QRLRMLCLNAALVKEEGKTEKAERDLATCRAKYE-RATL 161
The following BLAST results are available for this feature:
BLAST of Ec-00_001770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEC9_ECTSI3.490e-96100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEC0_ECTSI8.750e-5351.52Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KTB2_9PHAE4.330e-776.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1983220..1985725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length456
Hectar predicted targeting categorysignal anchor
Gene idEc-00_001770.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001770Ec-00_001770Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1983220..1985725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001770.1.1Ec-00_001770.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1983220..1983236 +
Ec-00_001770.1.2Ec-00_001770.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1984219..1984534 +
Ec-00_001770.1.3Ec-00_001770.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1985603..1985725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001770.1CDS:Ec-00_001770.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1983220..1983236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001770.1Ec-00_001770.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1983220..1985725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001770.1 ID=Ec-00_001770.1|Name=Ec-00_001770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=152bp
MVRSANVGSKIAGMFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMA
VGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATAN
EKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRAT
L*
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spliced messenger RNA

>Ec-00_001770.1 ID=Ec-00_001770.1|Name=Ec-00_001770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=456bp|location=Sequence derived from alignment at chr_00:1983220..1985725+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACGTTCCGCAAACGTTGGAAGCAAGATTGCCGGCATGTTTTCGCG
GGCGAAGGTCCTGCTCCCGGGGTACCGGCGGGCGGCGAAGGAGTTGGCAG
AACGCCAGCAGCTGGGGTTAGAGTTCGCGGCCTACAAGTGGAAGATGGCC
GTGGGGGGCGTCGCCTTCACGGTCTTGATCCTGATCCTGGTCCTGAGCAT
GGTGATACTGCTGCGGTGGTGGGGTAAGCGCCAAGCGGACCGTGAGTCCG
CCCTGGTGCACACCGTTGAGGAATCAAGGGCAGAAACTGCTACAGCCAAC
GAGAAGACAATGCTTATCGAAGCCCAGCGAGACCTCCAGCGCTTGGGGAT
GCTCTTCTTGAACGGCGCCATAATCAAGGAGGAAGAGAAGACGAAAAAGG
CGGAACGTGACTTGGCGACATGTCGTGCCAAGTACGACGTACGTGCGACG
CTCTGA
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protein sequence of Ec-00_001770.1

>Ec-00_001770.1 ID=Ec-00_001770.1|Name=Ec-00_001770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=152bp
MVRSANVGSKIAGMFSRAKVLLPGYRRAAKELAERQQLGLEFAAYKWKMA
VGGVAFTVLILILVLSMVILLRWWGKRQADRESALVHTVEESRAETATAN
EKTMLIEAQRDLQRLGMLFLNGAIIKEEEKTKKAERDLATCRAKYDVRAT
L*
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mRNA from alignment at chr_00:1983220..1985725+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001770.1 ID=Ec-00_001770.1|Name=Ec-00_001770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2506bp|location=Sequence derived from alignment at chr_00:1983220..1985725+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTACGTTCCGCAAAGTGAGACAAACCGGGGGGTGTCTGGGATCGCCA
ATCGCTTGTCGAGCAGCGTGATTCGCACACGTTCAATTGCTTGCAGTTCC
CAAGCAAAACTATCTTGCTTCCACGCGGAGTCGAGCGGGCGTAGTGTCGT
TAAACCTGACGTGCTATGTATTGCCCTCAGAACTTCGTAGAGCCGGGTAC
ATAGAAGGTCCGGTCGGTCACACCTAGAGCATTCTACGACACCATAGCAG
AGAAGGTGGTAGTCTACATACAGTAGGTCTCGTCTATGATTAGTTCAGTC
TGCTGGGGGAGATTTCCAGGAAACTCCAGGTGCGCACTTTCATACCACGT
GGTTCTGCTTGGTTCGCGAGGGCACAACGCGAGCCGCCGACCACGCTCGA
CCCGTAGGAGTGTCGGCCGATGGGGTCTCCTGCGCTTCTCTTGGAACGTC
TAGCGCTGCCTCCGCACAAACCATAATCTAAGCGAATACCTGTCTTGAGC
TCGCGCCGTTAGCGTGACGGACAAAAGCTCGATCGACCCCCTCGTGAGGA
AAAATATAATTATTTGTCTTCAAGATAAAATCAAGGTGACTACAGTAACA
CGGATAGATGTGTAGACTGCACATACATGCCGGGTTTGTTTCGCGAGAAT
ATTCACATGGCAACGTTTTGCTGATGCACACTACTCTGGTCGTTGTTTGC
AGCTGCCACGTTGACATGATGCTCATTTCGTGCACGATACTGCTCCCAAA
CTCTGCCGAGATGGAGTGAGAGCCCACTGGTTATTGCGCCGAACCAAGGA
AGTGTCTTTAAGAGTGCCGAAGCGAACGTTGGTGAAGTTTTTTTTGCGGG
ATTTGTGATGTTTTGGCCGAGATGAAGTTTAACAGTGGTTGGGGTGGTCG
GAGAGATAAAAAACGTACGTAACTCATCAAGGGCCCACCGGCAACCATCG
TCTACCACACTTGCGCTCATTCCTGCCCCATCTCCTCCCAATCCCCCAGC
GTTGGAAGCAAGATTGCCGGCATGTTTTCGCGGGCGAAGGTCCTGCTCCC
GGGGTACCGGCGGGCGGCGAAGGAGTTGGCAGAACGCCAGCAGCTGGGGT
TAGAGTTCGCGGCCTACAAGTGGAAGATGGCCGTGGGGGGCGTCGCCTTC
ACGGTCTTGATCCTGATCCTGGTCCTGAGCATGGTGATACTGCTGCGGTG
GTGGGGTAAGCGCCAAGCGGACCGTGAGTCCGCCCTGGTGCACACCGTTG
AGGAATCAAGGGCAGAAACTGCTACAGCCAACGAGAAGACAATGCTTATC
GAAGCCCAGCGAGACGTGAGTGCTTTTTCCAGCGCTGCCGTACCATACAC
GTCAGGCCAAGCCGGGTCGATGCCAGTACTATCGAAATACACTCTCTTCC
GTCGGTAATTCACGTCCATTTCTCATGATTGCAGTGCTGAAATTTCGCCG
CGTTCTTTCCACGCCCGTCCTGCGGATCGTTCCTCCACAGAGTGCAAGTT
GATTTGTGTGATCGAAATCAACTCTTAGATCAAGTGATTTGTGCGATCGA
AATCAACCCTTGGATCAAGTCATTTGTGTGATAGAAAAAAACGTTCGGAA
CCTATTCAGCGGGACTTCGTCAGCGGGACTTATTGTTCCGTGTATTTTTT
TAATGTTTTGGGAACGGTGTTCCTGGTCCACATATGTATGTGTCCCAAAA
ACTCTGGGTTCATGGCCGCTTCCTTGAAGAGGCTACCTAGGAACGGCATC
ACTGTTGCGGAACGTGGCAGAGGGTAGCGGGAGCACGGTGTGGGGTCTGG
TGTGCGGATTGCCAAACCAACCACGTTGCTGCTACAACATCTCCCCCATT
ATCAATCTCTGCGGAGAAGGCCTTCCGTTCGTTCCCCCATAACCCTGTCC
GACGCCCTGTAGAGTATTCAGTAGCACACTATCATGAACAAACTTGTTCA
ACTTTCGCCACGTGGACATTGAAAGAGCAAGTACCCCTCCCGCCCCCCGC
ATACCGTACACGATCCTCGTCTGCAGACGGCACGCTCGGCCTGCAATGAG
TACTAGCTCGCTGGTATCCAGAACAGGGAAGACGCCTACAGGGCGAGCAA
TCCATTGGCGCAAGTCGAAAGTCGAACACGATTTGCAGAAAACGACTTTA
AGAACGCGCCGAAGTCCAGAAGCAGGTAGATGCTGTGACAGCGTCTCACA
CGTTCTGATTTGTTGTGTACGTTCAGCTGAGCAAAACTGTGAAGCTACAC
GAGGTACACAGTTCTATGTACATTATCCCTCCGATGGTCTCTTGGCATCG
TTTAACATCGCTGACATTGCCGACTTAGTCGCTGGCCACAAATTCCCCTG
CCCGCACCCCCACCTTCAAACCTTGCCTTGCAGCTCCAGCGCTTGGGGAT
GCTCTTCTTGAACGGCGCCATAATCAAGGAGGAAGAGAAGACGAAAAAGG
CGGAACGTGACTTGGCGACATGTCGTGCCAAGTACGACGTACGTGCGACG
CTCTGA
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Coding sequence (CDS) from alignment at chr_00:1983220..1985725+

>Ec-00_001770.1 ID=Ec-00_001770.1|Name=Ec-00_001770.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=456bp|location=Sequence derived from alignment at chr_00:1983220..1985725+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTACGTTCCGCAAACGTTGGAAGCAAGATTGCCGGCATGTTTTCGCG
GGCGAAGGTCCTGCTCCCGGGGTACCGGCGGGCGGCGAAGGAGTTGGCAG
AACGCCAGCAGCTGGGGTTAGAGTTCGCGGCCTACAAGTGGAAGATGGCC
GTGGGGGGCGTCGCCTTCACGGTCTTGATCCTGATCCTGGTCCTGAGCAT
GGTGATACTGCTGCGGTGGTGGGGTAAGCGCCAAGCGGACCGTGAGTCCG
CCCTGGTGCACACCGTTGAGGAATCAAGGGCAGAAACTGCTACAGCCAAC
GAGAAGACAATGCTTATCGAAGCCCAGCGAGACCTCCAGCGCTTGGGGAT
GCTCTTCTTGAACGGCGCCATAATCAAGGAGGAAGAGAAGACGAAAAAGG
CGGAACGTGACTTGGCGACATGTCGTGCCAAGTACGACGTACGTGCGACG
CTCTGA
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Synonyms
The feature 'Ec-00_001770.1' has the following synonyms
Synonym
Esi0013_0148
Esi_0013_0148