Ec-00_001740.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001740.1
Unique NameEc-00_001740.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length164
Homology
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BLAST of Ec-00_001740.1 vs. uniprot
Match: D8LEC6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEC6_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.620e-105
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:   58 MNTLWAVIAVTCFLSTARTSSCFTHGARLRPPRPPGSCSSPPPATAPFESRAGATAPAAAAGVGGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTLIQMTSEEAFEDML 546
            MNTLWAVIAVTCFLSTARTSSCFTHGARLRPPRPPGSCSSPPPATAPFESRAGATAPAAAAGVGGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTLIQMTSEEAFEDML
Sbjct:    1 MNTLWAVIAVTCFLSTARTSSCFTHGARLRPPRPPGSCSSPPPATAPFESRAGATAPAAAAGVGGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTLIQMTSEEAFEDML 163
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BLAST of Ec-00_001740.1 vs. uniprot
Match: A0A7S3EKU6_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKU6_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 1.820e-8
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:  280 FKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQL------TLIQMTSEEAFEDML*RSPIARHAVRALVGAHTA 603
            F+PS  EVT  PGE   DVA R   + E  +  +CRDGGCY CE+EV          +L+R CQ+KIP     L      + I++ +E AF+       +A+H+  A     +A
Sbjct:   50 FEPSGSEVTASPGESLFDVAERVGELAEKPER-YCRDGGCYRCEMEVN--------GDLLRICQYKIPETRTYLDVLRCVSFIRIAAEGAFQTPF---CLAKHSANACAPVGSA 151
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BLAST of Ec-00_001740.1 vs. uniprot
Match: M2VVV3_GALSU (2Fe-2S iron-sulfur cluster binding domain protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VVV3_GALSU)

HSP 1 Score: 62.8 bits (151), Expect = 3.830e-8
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  268 ILLTFKPSEVEVTCKPGEVALDVASRCSGMPEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTLIQMTSEEAF-EDML 546
            +++ F P  V V  + G+  LDVA +   + E    PFCRDGGCY CE+E   + +L     L+R C++ +P  ++++ L ++ +++ + E+ML
Sbjct:   49 VVIRFLPDNVVVQAEVGKRLLDVALQAGQLKEHPLEPFCRDGGCYKCEMET--SNKLFEEYPLIRTCKYTVPVVSEEIQLTKVDNDQLWGENML 140
The following BLAST results are available for this feature:
BLAST of Ec-00_001740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEC6_ECTSI1.620e-105100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3EKU6_9RHOD1.820e-835.96Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2VVV3_GALSU3.830e-832.982Fe-2S iron-sulfur cluster binding domain protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1961020..1964072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.8
Seed ortholog evalue9.4e-86
Seed eggNOG ortholog2880.D8LEC6
Length1734
Hectar predicted targeting categorysignal peptide
Gene idEc-00_001740.1
EggNOG OGs2F0TI@1,2T1X5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001740Ec-00_001740Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1961020..1964072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001740.1Ec-00_001740.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1962204..1964014 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001740.1.5Ec-00_001740.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1961020..1962239 -
Ec-00_001740.1.4Ec-00_001740.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1962489..1962563 -
Ec-00_001740.1.3Ec-00_001740.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1962862..1962955 -
Ec-00_001740.1.2Ec-00_001740.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1963356..1963399 -
Ec-00_001740.1.1Ec-00_001740.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1963772..1964072 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0017403UTR:Ec-00_001740.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1961020..1962203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001740.1CDS:Ec-00_001740.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1962204..1962239 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0017405UTR:Ec-00_001740.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1964015..1964072 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001740.1 ID=Ec-00_001740.1|Name=Ec-00_001740.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=164bp
MNTLWAVIAVTCFLSTARTSSCFTHGARLRPPRPPGSCSSPPPATAPFES
RAGATAPAAAAGVGGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGM
PEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTL
IQMTSEEAFEDML*
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spliced messenger RNA

>Ec-00_001740.1 ID=Ec-00_001740.1|Name=Ec-00_001740.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr_00:1961020..1964072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTGCTGTCTATCTCTTAGCTCTCTCTGCCCCCCCTCTCTCTCTGTCG
ACGTCGTGATGAACACATTGTGGGCGGTCATCGCAGTCACATGTTTCTTG
TCAACGGCAAGGACCAGCTCATGTTTTACGCATGGTGCACGATTGCGGCC
ACCACGGCCGCCCGGATCATGTTCTTCGCCGCCGCCAGCAACGGCACCTT
TTGAGAGTCGAGCAGGAGCAACAGCACCTGCAGCAGCGGCAGGAGTGGGA
GGAGCAGAAGAGGGTGATATATTGCTGACCTTTAAGCCATCCGAAGTCGA
GGTGACGTGTAAACCAGGCGAGGTGGCGCTTGACGTTGCTTCAAGGTGCT
CGGGCATGCCTGAAGACAGCAAAGCCCCGTTCTGCCGGGATGGGGGGTGC
TACAACTGCGAGGTTGAGGTCGTCGAAGCCGCCGAACTGGGTATCGTGGA
CAACTTGGTTAGGGCGTGCCAGTTCAAGATACCCGCGGAGGCGAAGCAGC
TCACTCTCATTCAGATGACCAGCGAAGAAGCGTTCGAGGACATGCTCTGA
AGAAGTCCAATAGCGCGTCATGCCGTGCGTGCTCTTGTTGGAGCGCACAC
AGCGCCATAGGCGCCAGCCCCCCCCCAACCCCCCTCTTTCTTTTTTGGCG
TTCTTCCTTTCTTTGCCAGGTTTGTGTGTGGTTTGTATATCATCGACTTG
CCTTGGCCGGGTAGTGGTTGGTGGCCATCCGTACTACAGTGGTTGGTGGT
CGCGACTCTAACGATATAACGATAGTATCAACCTTGCATCAGCAAGAAGA
GGGCAGAATGGTCAGGCGTACTGACAGGGTATTGGGAGCGGTAGTTTGTA
CTCGGTGGTTTTGCGTGAGGACGTTACCGATGGTACATACTGCAGTACCC
CCGACCGAAGGAGCAGCACATTGCTTTGCTGGTATCGTGTAAGTCTTCAG
CGATCACATGTCTGCTGTTTATAGTTGCTTCGTTCTTTAGGTGTTCGTGA
AAGCTTTTGCGGCTACTCTTCTTGTATTGCATGGAATATTAATATTTTGA
ACGAAAAATGGCGGATTCCCATTCTCAACCGCCAGCTTTCGGGTTGACGT
TGTTTGTGGTGGAGTTCTAGAAGATGGTGGGTTGCTGTGTTTGTCCCAGC
TGGCAGCTTCCGAGCGAGCTACTAAATATGCATAGTGTGCAGCTTACCTT
TTTGGGGAATATCACAAGCATACATAAGTATGATACATTTATTTTGTAGA
AGAGGCGCACGCTTTCCTGGTGAAATGACTCTCTGTATTGCTACAAGTAA
GTGGTGTGTACGACCTGCTCCTCCTCTGTTAGATGCCCCCTCCCATCCCG
CGAACGCGTGAAACTTGATGGTCTTGTTCCATAACGTGTCGCCTATTGCA
GCCTGGATATTCCCATGACATTTATTCATTGAAGGCGTCGAAACACGGTT
GGTTTTTGTTTATTCCGCATTCTACTGCTGCTGTAGTATCATGGCACCAC
GCACTGAGTTGTTACGGTATTTGGATGTATGCGTTGATTAGGTGTGTTTC
GTTTTGATCAACAGCACCAACCAGCATGGTGAGGCAAATGAATATAGCTA
GCTGCTAGCTAGCGCCGGCACTTATATTTTATGCACACGAAAATCTCTTG
TTTCCACCGAGGCTATAATACGCCGAAGTACCAGTCTACTCGGCACATAG
TTTCTAGAGATATATTGAATGGTACCAATGGCCG
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protein sequence of Ec-00_001740.1

>Ec-00_001740.1 ID=Ec-00_001740.1|Name=Ec-00_001740.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=164bp
MNTLWAVIAVTCFLSTARTSSCFTHGARLRPPRPPGSCSSPPPATAPFES
RAGATAPAAAAGVGGAEEGDILLTFKPSEVEVTCKPGEVALDVASRCSGM
PEDSKAPFCRDGGCYNCEVEVVEAAELGIVDNLVRACQFKIPAEAKQLTL
IQMTSEEAFEDML*
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mRNA from alignment at chr_00:1961020..1964072-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001740.1 ID=Ec-00_001740.1|Name=Ec-00_001740.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3053bp|location=Sequence derived from alignment at chr_00:1961020..1964072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TCTCTGCTGTCTATCTCTTAGCTCTCTCTGCCCCCCCTCTCTCTCTGTCG
ACGTCGTGATGAACACATTGTGGGCGGTCATCGCAGTCACATGTTTCTTG
TCAACGGCAAGGACCAGCTCATGTTTTACGCATGGTGCACGATTGCGGCC
ACCACGGCCGCCCGGATCATGTTCTTCGCCGCCGCCAGCAACGGCACCTT
TTGAGAGTCGAGCAGGAGCAACAGCACCTGCAGCAGCGGCAGGAGTGGGA
GGAGCAGAAGAGGGTGATATATTGCTGACCTTTAAGCCATCCGAAGTCGA
GGTCAGAGCAGCACTGCTTTGCACGTGTCCTGTTTGATGTGTAGTCCGAT
GTCGTCAGAGGTGCGCATGATCCCATTCGTTCATGTTTACGGACGGTACA
AGTCCATGTGGTGTGGACATGTAGGCTGAGCACTAGCATACAGGATACAG
CAGTAGACTATTTATGTATTCAGTAATCGTCTCCAGTAGAATCTGGAATT
GTTTCGATGGCAAAATGACATCCCAACCCGGCCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTC
TCTCTGACGGTGAACGTGGTGACATTGCCTTGACAATAGTAAGCCCCCCT
TCCTCCTTCCCCTCCATCACCAGGTGACGTGTAAACCAGGCGAGGTGGCG
CTTGACGTTGCTTCAAGGTACAGGTCCACCCCGTAGTCCACAACGCATCA
ACAGCAGTGCTACAGCAGTACTCGTGCCGCGGGGTTTACGCCGGGCTCCT
TGGCTTTGTTTTGGCAGTTACTTGGTTCTTTGTCTCTTTTTCCTTTGTGC
TGTAAGCAACGGGCCAGATCGTTACGAGGGAGCTCAGCAGAGTCTATCAT
CAGCGGGAGAGCATTGGATGCAATGGGCAAGCAACAGTGGATAATACCCT
CTTGTGTTTCCTAAGGGCTTATGGTGCATGGTTACCCTTTCATTTTCGGA
ACACAAATGGGGCCCGTTCACCTCTGATCAAGGTTCGGACCGCCTGTCGA
TGCCCTCCATCGTGTAGGATAGCGGCGTCCGCGTGACGATCTGCCCATTC
CTCCTCTCCCGGCCCAGGTGCTCGGGCATGCCTGAAGACAGCAAAGCCCC
GTTCTGCCGGGATGGGGGGTGCTACAACTGCGAGGTTGAGGTCGTCGAAG
CCGCCGAACTGGTGAAACTCCTGTCTGTAGTACTTACCCCATGGCCCGAG
TCCAGAGTTCCTCCGTATGTATGTAGAGTCTGAGTTTGGTGCGAGTCGGG
CCCACTATTTTATCGCTGGTCTCATCTCTACGGCTTGTACATGGACAGCA
GTACTTGACGTTGTCATGTCCTCTTCCTCATTCGATGTGAGTGGGCCATA
CCAGAAAGGCCATGACACAGGAATGTGATCTACAGGTAGCTTTCAATTGA
TGTCGCTCGTACAGTCGCACCGATGCTTGAGTGAACCGGAAGTTCCTCTG
ATGCCCCAGGGTATCGTGGACAACTTGGTTAGGGCGTGCCAGTTCAAGAT
ACCCGCGGAGGCGAAGCAGCTCACTCTCATTCAGGTAAGGGTCCAGGGTG
GCTCATCCTGCGATGTTTCCACCGTTTCGTCCGTGTGCGGCGGGGTGTGT
GTGTGATCCACAGCGAAAGCTACGGTTATGTACCTGACTCTTGCAGTTTC
CACCTCGGTTGTGCGGTTTCTTGCTTTCAACATCGAACAACTTTCCTGCG
ATGTCTTAAGCCCCGGCATGTCTCTGTGCCCCTCCGTATCTATCCCTGGT
TGCCGTTGTTCATCGCCCGACCTGCCGTGCTAGATGACCAGCGAAGAAGC
GTTCGAGGACATGCTCTGAAGAAGTCCAATAGCGCGTCATGCCGTGCGTG
CTCTTGTTGGAGCGCACACAGCGCCATAGGCGCCAGCCCCCCCCCAACCC
CCCTCTTTCTTTTTTGGCGTTCTTCCTTTCTTTGCCAGGTTTGTGTGTGG
TTTGTATATCATCGACTTGCCTTGGCCGGGTAGTGGTTGGTGGCCATCCG
TACTACAGTGGTTGGTGGTCGCGACTCTAACGATATAACGATAGTATCAA
CCTTGCATCAGCAAGAAGAGGGCAGAATGGTCAGGCGTACTGACAGGGTA
TTGGGAGCGGTAGTTTGTACTCGGTGGTTTTGCGTGAGGACGTTACCGAT
GGTACATACTGCAGTACCCCCGACCGAAGGAGCAGCACATTGCTTTGCTG
GTATCGTGTAAGTCTTCAGCGATCACATGTCTGCTGTTTATAGTTGCTTC
GTTCTTTAGGTGTTCGTGAAAGCTTTTGCGGCTACTCTTCTTGTATTGCA
TGGAATATTAATATTTTGAACGAAAAATGGCGGATTCCCATTCTCAACCG
CCAGCTTTCGGGTTGACGTTGTTTGTGGTGGAGTTCTAGAAGATGGTGGG
TTGCTGTGTTTGTCCCAGCTGGCAGCTTCCGAGCGAGCTACTAAATATGC
ATAGTGTGCAGCTTACCTTTTTGGGGAATATCACAAGCATACATAAGTAT
GATACATTTATTTTGTAGAAGAGGCGCACGCTTTCCTGGTGAAATGACTC
TCTGTATTGCTACAAGTAAGTGGTGTGTACGACCTGCTCCTCCTCTGTTA
GATGCCCCCTCCCATCCCGCGAACGCGTGAAACTTGATGGTCTTGTTCCA
TAACGTGTCGCCTATTGCAGCCTGGATATTCCCATGACATTTATTCATTG
AAGGCGTCGAAACACGGTTGGTTTTTGTTTATTCCGCATTCTACTGCTGC
TGTAGTATCATGGCACCACGCACTGAGTTGTTACGGTATTTGGATGTATG
CGTTGATTAGGTGTGTTTCGTTTTGATCAACAGCACCAACCAGCATGGTG
AGGCAAATGAATATAGCTAGCTGCTAGCTAGCGCCGGCACTTATATTTTA
TGCACACGAAAATCTCTTGTTTCCACCGAGGCTATAATACGCCGAAGTAC
CAGTCTACTCGGCACATAGTTTCTAGAGATATATTGAATGGTACCAATGG
CCG
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Coding sequence (CDS) from alignment at chr_00:1961020..1964072-

>Ec-00_001740.1 ID=Ec-00_001740.1|Name=Ec-00_001740.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=492bp|location=Sequence derived from alignment at chr_00:1961020..1964072- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAACACATTGTGGGCGGTCATCGCAGTCACATGTTTCTTGTCAACGGC
AAGGACCAGCTCATGTTTTACGCATGGTGCACGATTGCGGCCACCACGGC
CGCCCGGATCATGTTCTTCGCCGCCGCCAGCAACGGCACCTTTTGAGAGT
CGAGCAGGAGCAACAGCACCTGCAGCAGCGGCAGGAGTGGGAGGAGCAGA
AGAGGGTGATATATTGCTGACCTTTAAGCCATCCGAAGTCGAGGTGACGT
GTAAACCAGGCGAGGTGGCGCTTGACGTTGCTTCAAGGTGCTCGGGCATG
CCTGAAGACAGCAAAGCCCCGTTCTGCCGGGATGGGGGGTGCTACAACTG
CGAGGTTGAGGTCGTCGAAGCCGCCGAACTGGGTATCGTGGACAACTTGG
TTAGGGCGTGCCAGTTCAAGATACCCGCGGAGGCGAAGCAGCTCACTCTC
ATTCAGATGACCAGCGAAGAAGCGTTCGAGGACATGCTCTGA
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Synonyms
The feature 'Ec-00_001740.1' has the following synonyms
Synonym
Esi0013_0145
Esi_0013_0145