Ec-00_000880.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.060e-40 Identity = 132/186 (70.97%), Postives = 136/186 (73.12%), Query Frame = 3 Query: 288 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSAXXXXXXXXAPDSEKNGASAEGGS 845 PRDDSIKP+VVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEAR+RVGGRCYTKRWISSGVKPPER XXXXX EK X XXXXXXXXXXXXXXX XXXXXXXXX EKVPE G +EL A ATSTPPAP SA APDS K GA+AEGGS Sbjct: 513 PRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARRRVGGRCYTKRWISSGVKPPERPXXXXXSTKGPRVARREAAAAA--EKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGAAEKVPEKGEQELAASATSTPPAPDSADAAIAA--APDSGKRGAAAEGGS 694
BLAST of Ec-00_000880.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.140e-31 Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 3 Query: 369 AGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA 776 +GLG ALELQKLGIEVIV EARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA Sbjct: 454 SGLGGALELQKLGIEVIVGEARQRVGGRCYTKRWISSGVKPPERXXXXXXXXXXXXXXXXXXXXXXXXEKXXMEXXXXXXXXXXXXXXXGGKEATGGXXXXXXXXXXXXXXEKVPETGGRELTAGATSTPPAPGSA 589
BLAST of Ec-00_000880.1 vs. uniprot
Match: D8LDW3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW3_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.350e-12 Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 3 Query: 702 EKVPETGGRELTAGATSTPPAPGSAXXXXXXXXAPDSEKNGASAEGGS 845 EKVPETGGRELTAGATSTPPAPGS XXXXXXXXAPDSEKNGASAEGGS Sbjct: 40 EKVPETGGRELTAGATSTPPAPGSXXXXXXXXXAPDSEKNGASAEGGS 87
BLAST of Ec-00_000880.1 vs. uniprot
Match: UPI0003602C02 (flavin monoamine oxidase family protein n=1 Tax=Longispora albida TaxID=203523 RepID=UPI0003602C02) HSP 1 Score: 68.6 bits (166), Expect = 2.130e-9 Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 3 Query: 288 PRDDSIKPVVVSSLGR----PHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGV 485 P DSI VV + LGR P RV+V+GAG AGL AA ELQ+ G E +V+EA+ RVGGR YT R + G+ Sbjct: 29 PVPDSILDVVTAGLGRREQHPKRVIVIGAGMAGLVAAFELQRQGHEPVVLEAQNRVGGRVYTMRDFAPGL 98
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A7X4BVU0_9BACT (FAD-dependent oxidoreductase n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BVU0_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 4.590e-8 Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 3 Query: 288 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 467 P + P +++ GRP R+VVVGAG AGL AA EL + G EV V+EAR+RVGGR T R Sbjct: 32 PVEPEDSPGALAATGRPMRIVVVGAGMAGLAAAYELSRAGHEVTVLEARERVGGRVLTLR 91
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A7S2SPD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPD9_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 8.860e-8 Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 3 Query: 333 RPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTK 464 R RVVV+GAG AGL AA EL+KLG EVIV+EAR R+GGRC+++ Sbjct: 131 RLFRVVVIGAGMAGLAAARELEKLGFEVIVLEARHRIGGRCHSE 174
BLAST of Ec-00_000880.1 vs. uniprot
Match: UPI0016899B31 (FAD-dependent oxidoreductase n=2 Tax=Phormidium sp. FACHB-1136 TaxID=2692848 RepID=UPI0016899B31) HSP 1 Score: 63.5 bits (153), Expect = 9.240e-8 Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3 Query: 324 SLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 461 ++ P RV+VVGAG AGL AA ELQ+LG EV+VVEAR R+GGR +T Sbjct: 31 TVSNPKRVIVVGAGLAGLAAAQELQRLGHEVVVVEARDRIGGRVWT 76
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A838MFQ8_9HYPH (FAD-dependent oxidoreductase n=3 Tax=Rhizobiaceae TaxID=82115 RepID=A0A838MFQ8_9HYPH) HSP 1 Score: 63.2 bits (152), Expect = 1.310e-7 Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3 Query: 300 SIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKRWISSGVK 488 ++KP ++ G+P +V+VVGAG AGL AA L + GIEVIVVEAR R+GGR T R + V+ Sbjct: 71 ALKPAFAAAAGKP-KVIVVGAGIAGLSAARTLMRHGIEVIVVEARDRIGGRISTDRSLGVAVE 132
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A2S9F344_9MYCO (Monooxygenase (Fragment) n=1 Tax=Mycobacterium sp. ITM-2017-0098 TaxID=2099692 RepID=A0A2S9F344_9MYCO) HSP 1 Score: 57.4 bits (137), Expect = 1.330e-7 Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 3 Query: 345 VVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYT 461 VVVVGAGFAGL AA EL +LG +V+V+E R RVGGR YT Sbjct: 4 VVVVGAGFAGLSAARELSRLGRDVVVLEGRDRVGGRSYT 42
BLAST of Ec-00_000880.1 vs. uniprot
Match: A0A6G1SFH7_9ACAR (Lysine-specific histone demethylase 1A n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SFH7_9ACAR) HSP 1 Score: 63.2 bits (152), Expect = 1.630e-7 Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3 Query: 306 KPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVEARQRVGGRCYTKR 467 KP + S R RV+V+GAG +GL AA +LQK G+EVIV+EAR RVGGR +T R Sbjct: 259 KPPLKSGGKRAGRVIVIGAGLSGLAAARQLQKFGMEVIVLEARNRVGGRVHTYR 312 The following BLAST results are available for this feature:
BLAST of Ec-00_000880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=236bpback to top spliced messenger RNA >Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=849bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. GAGGAGGAGGAGGAGCAGGAAGAAGAGGAAGACGATGAGGAGGAAGAGGAback to top protein sequence of Ec-00_000880.1 >Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=236bp MQRQQQQLQQSSRKNKRRQEDTSAVEAAKKKRKVQGGGGDPTATARKKKPback to top mRNA from alignment at chr_00:1134319..1135682+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1364bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:1134319..1135682+ >Ec-00_000880.1 ID=Ec-00_000880.1|Name=Ec-00_000880.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=708bp|location=Sequence derived from alignment at chr_00:1134319..1135682+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_000880.1' has the following synonyms
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