Ec-00_000830.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000830.1
Unique NameEc-00_000830.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length27
Homology
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BLAST of Ec-00_000830.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.070e-9
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   40 MCTRCGACMTFCPICMQDITDLVELQ 117
            MCTRCGACMTFCPICMQDITDLVELQ
Sbjct:  136 MCTRCGACMTFCPICMQDITDLVELQ 161
The following BLAST results are available for this feature:
BLAST of Ec-00_000830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXX5_ECTSI4.070e-9100.00RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1076108..1076877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D7FXX5
Length365
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_000830.1
EggNOG free text desc.Plus-3 domain
EggNOG OGs2A73H@1,2RYD8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000830Ec-00_000830Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1076108..1076877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000830.1.2Ec-00_000830.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1076108..1076381 -
Ec-00_000830.1.1Ec-00_000830.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1076787..1076877 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008303UTR:Ec-00_000830.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1076108..1076351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000830.1CDS:Ec-00_000830.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1076352..1076381 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0008305UTR:Ec-00_000830.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1076838..1076877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000830.1Ec-00_000830.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1076352..1076837 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000830.1 ID=Ec-00_000830.1|Name=Ec-00_000830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=27bp
MCTRCGACMTFCPICMQDITDLVELQ*
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spliced messenger RNA

>Ec-00_000830.1 ID=Ec-00_000830.1|Name=Ec-00_000830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=365bp|location=Sequence derived from alignment at chr_00:1076108..1076877- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGCGACGAATACCGTGTGCTTGGACTGCGGACACCAGTGCATGTGCACAA
GGTGTGGGGCGTGCATGACATTCTGCCCCATTTGCATGCAGGATATTACC
GACCTGGTGGAGTTGCAATAGCAGCAAACACCGCCCACCCCGCATGGTCC
TCTGGCGAGTGGAGCTGGGACAAGCTCGGAATGGCGTGTTGCAAGGCGTT
GCGTCTACTTTTATTTATTGGTGCCTGGCAGTTTCCTGGAGTTCGGCAGA
CAACGGCGGTGCTGCCAAGTGTTGCCAAGGTTTATGTTGATTGTTTTTGG
AACGTTGTTTTGCAGGGGCACATTGTGTAGCCGAGAGATCGGAAGATCAG
TCTCTGTCGCGTAAC
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protein sequence of Ec-00_000830.1

>Ec-00_000830.1 ID=Ec-00_000830.1|Name=Ec-00_000830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=27bp
MCTRCGACMTFCPICMQDITDLVELQ*
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mRNA from alignment at chr_00:1076108..1076877-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000830.1 ID=Ec-00_000830.1|Name=Ec-00_000830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=770bp|location=Sequence derived from alignment at chr_00:1076108..1076877- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGCGACGAATACCGTGTGCTTGGACTGCGGACACCAGTGCATGTGCACAA
GGTGTGGGGCGTGCATGACATTCTGCCCCATTTGCATGCAGGTATGCACA
CGCTGTACATTCTTCCGGGTAGTACTTGTACAACGTGCATATGGAAGCAT
GCTTGGCACACGCTTGTCGGAGTGGGGGCACGGCTGCCCTGGGTGCTCCA
TCTCTGCGTAGCATCAAGCAACACATTGCTTGGGGGAACATGTGCCGTCT
GATTTTTTTCGACTTGGTCACTTATGCTTTAGGGACGTGTTTTCTATGCA
GATGGTAAAAGGCCCAAATGGGGTGCAACCAGCATGTGTTTGCGTGTATG
TACGCCGCGCATGTTTTGTCAAAACGGAATTTCCGATTGTGAAGTATCAA
GCAAAGCACGAAGGCTTCATTCAAAATCACATCGCAATTGTTGAGTGACG
GCCTCGACTTCCGGTGTTCGCCATCAAACACGCAACAACACAACAGGATA
TTACCGACCTGGTGGAGTTGCAATAGCAGCAAACACCGCCCACCCCGCAT
GGTCCTCTGGCGAGTGGAGCTGGGACAAGCTCGGAATGGCGTGTTGCAAG
GCGTTGCGTCTACTTTTATTTATTGGTGCCTGGCAGTTTCCTGGAGTTCG
GCAGACAACGGCGGTGCTGCCAAGTGTTGCCAAGGTTTATGTTGATTGTT
TTTGGAACGTTGTTTTGCAGGGGCACATTGTGTAGCCGAGAGATCGGAAG
ATCAGTCTCTGTCGCGTAAC
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Coding sequence (CDS) from alignment at chr_00:1076108..1076877-

>Ec-00_000830.1 ID=Ec-00_000830.1|Name=Ec-00_000830.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=81bp|location=Sequence derived from alignment at chr_00:1076108..1076877- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGCACAAGGTGTGGGGCGTGCATGACATTCTGCCCCATTTGCATGCA
GGATATTACCGACCTGGTGGAGTTGCAATAG
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Synonyms
The feature 'Ec-00_000830.1' has the following synonyms
Synonym
Esi1233_0001
Esi_1233_0001