Ec-00_000350.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000350.1
Unique NameEc-00_000350.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length244
Homology
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BLAST of Ec-00_000350.1 vs. uniprot
Match: D7FHJ9_ECTSI (HRDC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ9_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.210e-123
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 2 
Query:  368 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGWRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 1096
            MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGWRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA
Sbjct:    1 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGWRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 243
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BLAST of Ec-00_000350.1 vs. uniprot
Match: A0A6H5JHP7_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP7_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 1.010e-101
Identity = 219/278 (78.78%), Postives = 224/278 (80.58%), Query Frame = 2 
Query:  368 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGAL----------VVPVEEEPEEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------ARGWRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 1096
            MWKSLSRAHVATAVLWRPSREAK EDAHSERHFRTAEQRL+PPRWSEINVRVYEDIF+WRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVR  LGL GED RG GAL          V+PVEEE EEEA   XXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X                            +RGWR+GGRWG RRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA
Sbjct:  210 MWKSLSRAHVATAVLWRPSREAKREDAHSERHFRTAEQRLKPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRARLGLPGEDGRGPGALGPPVDDGGALVLPVEEEREEEALRPXXXXDRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXELEGVARXXXXXXXXXXXXXXXXXXEHWSRGWRLGGRWGCRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA 487
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BLAST of Ec-00_000350.1 vs. uniprot
Match: A0A7S3UUB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUB7_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-15
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 2 
Query:  380 LSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVR 730
            L R     A LW P  + K  D   +R F+ A +  R  RW + +   +  +++WRDRTAR LDDG  Y+C  +TL+ VA  +P  +  LR V +PLSP LG+G     A L+R ++
Sbjct:   30 LLRCQKGVARLWEPKDKCKPGDHRRQRAFKAARRDRR--RWGDRHSAAFAALYLWRDRTARELDDGPHYLCSVETLVAVAQRLPPDLAALRSVQLPLSPALGDGGNALGAALLRTIK 144
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BLAST of Ec-00_000350.1 vs. uniprot
Match: D7FJC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.220e-6
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 2 
Query:   11 ELGRDRGRRRRDDVNRGDGYRWPHP 85
            ELGRDRGRRRRDDVNRGDGYRWPHP
Sbjct:  309 ELGRDRGRRRRDDVNRGDGYRWPHP 333
The following BLAST results are available for this feature:
BLAST of Ec-00_000350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHJ9_ECTSI1.210e-123100.00HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JHP7_9PHAE1.010e-10178.78HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3UUB7_HETAK1.140e-1538.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FJC3_ECTSI6.220e-6100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:530126..531225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1100
Hectar predicted targeting categorymitochondrion
Gene idEc-00_000350.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000350Ec-00_000350Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 530126..531225 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000350.1.1Ec-00_000350.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 530126..531225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000350.1CDS:Ec-00_000350.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 530126..530857 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0003505UTR:Ec-00_000350.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 530858..531225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000350.1Ec-00_000350.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 530126..530857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000350.1 ID=Ec-00_000350.1|Name=Ec-00_000350.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=244bp
MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINV
RVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVP
LSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAL
GPPAEDDRGRGALGLPVEEEREWGVLGMPADNERVVGALGLPAEEHRARG
WRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA*
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spliced messenger RNA

>Ec-00_000350.1 ID=Ec-00_000350.1|Name=Ec-00_000350.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1100bp|location=Sequence derived from alignment at chr_00:530126..531225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTTGGGGTGAGAGTTGGGGCGTGACCGAGGGCGTCGAAGACGCGACGACG
TTAACCGCGGCGACGGCTACCGGTGGCCACACCCCTAAGGACGAGATGAG
CCCAAGCTTTACGGCCGAAAGGGAAGAAGAAGTTGATGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAAGTCCCGCGAACACGTCG
CAAGCAGCAGGTCCCGTAGACTCCTCGCTCGCTGATGACTTGAACTCTAC
ACCACCGGCAGCCGGAGCGGCGGCGTACGACGCAACGAATACGGTTGCCC
CTGGGGACGACCGGCCCGCCGCAGAGCCGGACCCTGCTGCCGTAGTCCTG
ACGGACGGAATACTGCTCATGTGGAAGTCGCTATCGAGGGCCCACGTCGC
GACGGCCGTGCTGTGGCGCCCCTCCCGGGAGGCGAAGGGCGAGGACGCCC
ACAGCGAGAGGCACTTCCGCACGGCGGAGCAGCGGCTGAGGCCGCCCCGC
TGGTCCGAGATCAACGTGCGGGTGTACGAGGACATTTTTGTCTGGAGGGA
CAGGACCGCCCGCAGGCTGGACGACGGGGTGGCCTACGTCTGCCCCGGGG
ACACCCTGATCGAGGTGGCCCTGGCGATGCCGACGACGGTGGACGGCCTT
CGGCGGGTGGCGGTTCCCCTGTCGCCGGTGCTCGGGAACGGCGATACCCC
GGAGGCCGCCGAGCTTGTCCGGGTGGTGAGGGTTGCGCTTGGCCTGACTG
GTGAGGACGATCGTGGACGGGGGGCGCTTGTGGTGCCTGTGGAGGAAGAG
CCTGAGGAGGAGGCGCTTGGACCGCCTGCTGAGGACGATCGTGGGCGGGG
GGCGCTCGGATTGCCTGTTGAAGAGGAGCGTGAGTGGGGGGTGCTTGGAA
TGCCTGCTGACAACGAGCGTGTGGTGGGGGCGCTTGGACTGCCTGCTGAG
GAGCATAGAGCGAGGGGGTGGAGAATAGGCGGCCGCTGGGGCAGTAGGCG
AGATGGGGTGGTTTACTCGAAGACGGTGGTGGCGCTGGCCGCGGCCACGG
CTGCGACTGCGGGAGTCATCGTCGCCGTTTGGAAACGTAGGAAAGCCTAA
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protein sequence of Ec-00_000350.1

>Ec-00_000350.1 ID=Ec-00_000350.1|Name=Ec-00_000350.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=244bp
MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINV
RVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVP
LSPVLGNGDTPEAAELVRVVRVALGLTGEDDRGRGALVVPVEEEPEEEAL
GPPAEDDRGRGALGLPVEEEREWGVLGMPADNERVVGALGLPAEEHRARG
WRIGGRWGSRRDGVVYSKTVVALAAATAATAGVIVAVWKRRKA*
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mRNA from alignment at chr_00:530126..531225-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000350.1 ID=Ec-00_000350.1|Name=Ec-00_000350.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1100bp|location=Sequence derived from alignment at chr_00:530126..531225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTTGGGGTGAGAGTTGGGGCGTGACCGAGGGCGTCGAAGACGCGACGACG
TTAACCGCGGCGACGGCTACCGGTGGCCACACCCCTAAGGACGAGATGAG
CCCAAGCTTTACGGCCGAAAGGGAAGAAGAAGTTGATGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAAGTCCCGCGAACACGTCG
CAAGCAGCAGGTCCCGTAGACTCCTCGCTCGCTGATGACTTGAACTCTAC
ACCACCGGCAGCCGGAGCGGCGGCGTACGACGCAACGAATACGGTTGCCC
CTGGGGACGACCGGCCCGCCGCAGAGCCGGACCCTGCTGCCGTAGTCCTG
ACGGACGGAATACTGCTCATGTGGAAGTCGCTATCGAGGGCCCACGTCGC
GACGGCCGTGCTGTGGCGCCCCTCCCGGGAGGCGAAGGGCGAGGACGCCC
ACAGCGAGAGGCACTTCCGCACGGCGGAGCAGCGGCTGAGGCCGCCCCGC
TGGTCCGAGATCAACGTGCGGGTGTACGAGGACATTTTTGTCTGGAGGGA
CAGGACCGCCCGCAGGCTGGACGACGGGGTGGCCTACGTCTGCCCCGGGG
ACACCCTGATCGAGGTGGCCCTGGCGATGCCGACGACGGTGGACGGCCTT
CGGCGGGTGGCGGTTCCCCTGTCGCCGGTGCTCGGGAACGGCGATACCCC
GGAGGCCGCCGAGCTTGTCCGGGTGGTGAGGGTTGCGCTTGGCCTGACTG
GTGAGGACGATCGTGGACGGGGGGCGCTTGTGGTGCCTGTGGAGGAAGAG
CCTGAGGAGGAGGCGCTTGGACCGCCTGCTGAGGACGATCGTGGGCGGGG
GGCGCTCGGATTGCCTGTTGAAGAGGAGCGTGAGTGGGGGGTGCTTGGAA
TGCCTGCTGACAACGAGCGTGTGGTGGGGGCGCTTGGACTGCCTGCTGAG
GAGCATAGAGCGAGGGGGTGGAGAATAGGCGGCCGCTGGGGCAGTAGGCG
AGATGGGGTGGTTTACTCGAAGACGGTGGTGGCGCTGGCCGCGGCCACGG
CTGCGACTGCGGGAGTCATCGTCGCCGTTTGGAAACGTAGGAAAGCCTAA
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Coding sequence (CDS) from alignment at chr_00:530126..531225-

>Ec-00_000350.1 ID=Ec-00_000350.1|Name=Ec-00_000350.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=732bp|location=Sequence derived from alignment at chr_00:530126..531225- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGGAAGTCGCTATCGAGGGCCCACGTCGCGACGGCCGTGCTGTGGCG
CCCCTCCCGGGAGGCGAAGGGCGAGGACGCCCACAGCGAGAGGCACTTCC
GCACGGCGGAGCAGCGGCTGAGGCCGCCCCGCTGGTCCGAGATCAACGTG
CGGGTGTACGAGGACATTTTTGTCTGGAGGGACAGGACCGCCCGCAGGCT
GGACGACGGGGTGGCCTACGTCTGCCCCGGGGACACCCTGATCGAGGTGG
CCCTGGCGATGCCGACGACGGTGGACGGCCTTCGGCGGGTGGCGGTTCCC
CTGTCGCCGGTGCTCGGGAACGGCGATACCCCGGAGGCCGCCGAGCTTGT
CCGGGTGGTGAGGGTTGCGCTTGGCCTGACTGGTGAGGACGATCGTGGAC
GGGGGGCGCTTGTGGTGCCTGTGGAGGAAGAGCCTGAGGAGGAGGCGCTT
GGACCGCCTGCTGAGGACGATCGTGGGCGGGGGGCGCTCGGATTGCCTGT
TGAAGAGGAGCGTGAGTGGGGGGTGCTTGGAATGCCTGCTGACAACGAGC
GTGTGGTGGGGGCGCTTGGACTGCCTGCTGAGGAGCATAGAGCGAGGGGG
TGGAGAATAGGCGGCCGCTGGGGCAGTAGGCGAGATGGGGTGGTTTACTC
GAAGACGGTGGTGGCGCTGGCCGCGGCCACGGCTGCGACTGCGGGAGTCA
TCGTCGCCGTTTGGAAACGTAGGAAAGCCTAA
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Synonyms
The feature 'Ec-00_000350.1' has the following synonyms
Synonym
Esi1084_0003
Esi_1084_0003