mRNA_Ecto-sp6_S_contig102.864.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 1.580e-86
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 3

Query:   48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET 428
            +PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET
Sbjct:    6 VPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET 132

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.830e-65
Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 3

Query:   48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPG-REDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            MPAYHSK    +    CGCAILPL T +RGPAP+   G +EDI++E L+YFRAN++FRN+ +E +ADRTLIYLTF+ QQCL+E+EK   K+ A+RAL  LA + FAAPG+AGW LGT+FP      E E FK Y +QCREEL  RL +RV+ +  ++SK W  FSKR+FMGKEM
Sbjct:    1 MPAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGDQEDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQAANRALNLLANKTFAAPGEAGWQLGTIFPAPRVRDEAEMFKAYFKQCREELGTRLIERVFADG-TKSKWWQFFSKRRFMGKEM 173

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.280e-58
Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = 3

Query:   48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            MPAYHSK  + +A   CGCA+LPL T+ RGPAP++  G EDI++EALYYFRANVLFRNY+I+ +ADRTLIY+T ++   L+E ++     +ASR L   A++NFA PG+AGW LGTLFP      E+E FK Y +Q REE+++RL  ++Y +   ++K W +FSKRKFMG +M
Sbjct:   42 MPAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGEEDILDEALYYFRANVLFRNYEIKSAADRTLIYMTLYVTMILRECDRIGSATDASRQLQLSAIRNFAVPGEAGWALGTLFPPPADRNESETFKAYFKQAREEMSERLIAKLYTD-AGKNKWWAMFSKRKFMGIDM 213

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.530e-58
Identity = 89/174 (51.15%), Postives = 119/174 (68.39%), Query Frame = 3

Query:   45 TMPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            TMP YHSK T +  Q  CGCA+LPL T VRGPAP      +D+++E + +FRANVLFRN++I+ SADRTLIYLT ++QQCLKE E+     E  +AL  LA++ FA PG   W +G+++P   S  E E  K Y +QCREEL +R    +++ + S++K W  FSKRKFMGKE+
Sbjct:   10 TMPVYHSKFTGQEGQEMCGCALLPLKTRVRGPAPPMPEDEDDVIDETIKFFRANVLFRNFEIKNSADRTLIYLTLYLQQCLKECERAKTVGEGEKALQQLALRQFAIPGDTNWAMGSMYPAPKSTAEGEGCKAYFKQCREELGRRFSQVLFLPDGSKNKWWQAFSKRKFMGKEL 183

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA)

HSP 1 Score: 179 bits (454), Expect = 1.440e-53
Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = 3

Query:   57 YHSKQTD-ENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            YHS   D  +A+V CGC+ILP+ TT RGPAP+A  G +DI++E + +F+ANVLF++++++G ADR LIYLT +I QCLK+LE  P K EA + LT +A + FA PG   + LG+ FP   S+QE +  + YM+Q REE+ +RL  +VY ++   SK W++F+KR+FM K++
Sbjct:    7 YHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGEDDIIDETIGFFKANVLFKHFEVKGPADRVLIYLTLYITQCLKKLEGAPSKMEALKTLTAMAHETFALPGDPAFPLGSFFPKPASSQEADLARAYMKQLREEMGRRLLTKVYGDSSEPSKFWLVFAKRRFMNKQL 177

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A0M0JZA5_9EUKA (Actin-related protein 2 3 complex subunit 3 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZA5_9EUKA)

HSP 1 Score: 189 bits (481), Expect = 1.610e-53
Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 3

Query:   57 YHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKE 563
            YHS + DE AQ  CGC+ILP+ TT RGPAPLA  G EDI++EAL +F+ANVLF++++++G  DR +IYLT +I QCL+ LEK P  +E  +ALT +A ++F  PG AG+ LG+ +P   SAQE E  + Y RQ REE  +RL  +VY E+ S SK W++F+K+KFM KE
Sbjct:    3 YHSAKNDEEAQQACGCSILPIVTTTRGPAPLAPEGTEDIIDEALGFFKANVLFKHFEVKGGGDRVMIYLTLYITQCLQRLEKCPSPQEGIKALTAMAGESFKIPGDAGFALGSFYPTPASAQEAELCRSYFRQVREETGRRLITKVYGEDGSPSKFWLVFAKKKFMNKE 171

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A8J6CIQ6_DIALT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIQ6_DIALT)

HSP 1 Score: 179 bits (453), Expect = 1.920e-53
Identity = 84/174 (48.28%), Postives = 122/174 (70.11%), Query Frame = 3

Query:   54 AYHSKQTDENAQ-VCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESR--SKHWMLFSKRKFMGKEM 566
            A+HS+  DE+A  + CGCA+LP+ TT RGPAP    G+EDI++E L++F+ANVLFRN+++ GSADR L+YLT ++ +CLK +E  P K +A RAL N+A+++FA PG A + LG  FP   + QE +  + Y RQ REE  +R+ ++ Y++ E+R  SK W   SKR+FM K +
Sbjct:    2 AFHSQFKDEDAATIACGCAVLPIRTTCRGPAPSLTAGKEDIIDEVLFFFKANVLFRNFEVRGSADRLLVYLTLYVTECLKRVEAAPSKADAVRALNNMALESFAIPGDASFTLGPYFPTPENRQEADFVRSYFRQLREETGRRVVEKCYIDGETRVPSKWWTSLSKRRFMNKAL 175

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S4BNT7_CHRCT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNT7_CHRCT)

HSP 1 Score: 177 bits (450), Expect = 4.950e-53
Identity = 82/170 (48.24%), Postives = 121/170 (71.18%), Query Frame = 3

Query:   57 YHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            YHS     +A+  CG AILP+ T VRGPAP A    +D+++E L++F+ANVLFR+++++G+ADR LIYLT +I QCLK+LE  P +  A +ALT++A ++F  PG AG+ LGT FP   ++QE +  + Y++Q REE  +RL D+VY E+   SK W++F+KR+FM K +
Sbjct:    3 YHSSLNGVDAEAACGLAILPIKTAVRGPAPAAPAESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKALTSMAHESFLIPGDAGFALGTFFPSPQTSQEADLTRAYLKQLREETGRRLLDKVYGEDGQPSKFWLVFAKRRFMNKSV 172

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S2FM28_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM28_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.060e-52
Identity = 77/173 (44.51%), Postives = 120/173 (69.36%), Query Frame = 3

Query:   48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            MPAYHSK  D      CGC +LP+ TTVRG AP  +   EDI++E L +FRAN+ FRN++++G ADRTL+YL+ ++ Q LKEL++   K +A++ L  L +++F  PG+ GW LG +FP  TS  + + F+ Y +QC+ E+ +R+ + +Y+ + +++K W +F+KRKFMGK +
Sbjct:   13 MPAYHSKNNDYQGNEACGCLMLPIKTTVRGTAPPCEADDEDIIDETLKFFRANIFFRNFEVKGGADRTLLYLSLYVAQVLKELDRQNDKTQAAKDLHALEIKSFPVPGEQGWTLGGMFPNPTSPADADAFRAYFKQCKVEIGRRVLEILYLPDGTKNKWWNMFAKRKFMGKTL 185

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BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU)

HSP 1 Score: 176 bits (447), Expect = 1.450e-52
Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3

Query:   48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
            M  YHS       +V CGCAILPL T++RGPA  A  G EDIV+E L YF+ANVLF++++++G+ADRTLIYLT +  QCLK LE  P + +  +ALT LA + F+APG+  + L + FP G S  E +  + Y++Q REEL +RL  +VY +N   SK W+ FSKRKFM K +
Sbjct:    1 MVVYHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGEEDIVDETLGYFKANVLFKHFEVKGAADRTLIYLTLYTTQCLKRLETCPTQTDGVKALTALAHEAFSAPGEPRFALASFFPAGASPAELDLCRAYLKQAREELGRRLALKVYGDNGPPSKLWIAFSKRKFMNKAL 173

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7G978_ECTSI	1.580e-86	99.21	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A835YQX6_9STRA	2.830e-65	58.05	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A7S1U2P7_9STRA	1.280e-58	53.76	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2RMH4_9STRA	5.530e-58	51.15	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A7S0Q1V8_9EUKA	1.440e-53	48.54	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A0M0JZA5_9EUKA	1.610e-53	53.25	Actin-related protein 2 3 complex subunit 3 (Fragm...	[more]
A0A8J6CIQ6_DIALT	1.920e-53	48.28	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A7S4BNT7_CHRCT	4.950e-53	48.24	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
A0A7S2FM28_9STRA	1.060e-52	44.51	Actin-related protein 2/3 complex subunit 3 n=1 Ta...	[more]
R1DRS6_EMIHU	1.450e-52	50.29	Actin-related protein 2/3 complex subunit 3 n=3 Ta...	[more]

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Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	261.5
Seed ortholog evalue	2.7e-67
Seed eggNOG ortholog	2880.D7G978
Preferred name	ARPC3
Model size	701
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K05756,ko:K07541,ko:K09680
KEGG Reaction	R02971,R03018,R04391,R05919
KEGG Pathway	ko00563,ko00770,ko01100,ko04144,ko04666,ko04810,ko05100,ko05130,ko05131,ko05132,map00563,map00770,map01100,map04144,map04666,map04810,map05100,map05130,map05131,map05132
KEGG Module	M00120
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005885,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008150,GO:0009987,GO:0010638,GO:0015629,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0030424,GO:0030426,GO:0030427,GO:0030832,GO:0030833,GO:0030838,GO:0031252,GO:0031334,GO:0031941,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033267,GO:0034314,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044463,GO:0044464,GO:0045010,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0061850,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0090723,GO:0090725,GO:0097435,GO:0097458,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:0120025,GO:0120038,GO:0150034,GO:1902903,GO:1902905
Exons	5
EggNOG free text desc.	Arp2/3 complex-mediated actin nucleation
EggNOG OGs	KOG3155@1,KOG3155@2759
EC	2.7.1.33
Cds size	525
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131,ko04812