mRNA_Ecto-sp6_S_contig102.864.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: D7G978_ECTSI (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G978_ECTSI) HSP 1 Score: 261 bits (668), Expect = 1.580e-86 Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 3 Query: 48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET 428
+PAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET
Sbjct: 6 VPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQET 132
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A835YQX6_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX6_9STRA) HSP 1 Score: 209 bits (531), Expect = 2.830e-65 Identity = 101/174 (58.05%), Postives = 128/174 (73.56%), Query Frame = 3 Query: 48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPG-REDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
MPAYHSK + CGCAILPL T +RGPAP+ G +EDI++E L+YFRAN++FRN+ +E +ADRTLIYLTF+ QQCL+E+EK K+ A+RAL LA + FAAPG+AGW LGT+FP E E FK Y +QCREEL RL +RV+ + ++SK W FSKR+FMGKEM
Sbjct: 1 MPAYHSKLQGTSVGDACGCAILPLRTNLRGPAPILPKGDQEDIIDETLFYFRANIMFRNFAVESNADRTLIYLTFYAQQCLREMEKTDDKQAANRALNLLANKTFAAPGEAGWQLGTIFPAPRVRDEAEMFKAYFKQCREELGTRLIERVFADG-TKSKWWQFFSKRRFMGKEM 173
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S1U2P7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2P7_9STRA) HSP 1 Score: 193 bits (491), Expect = 1.280e-58 Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = 3 Query: 48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
MPAYHSK + +A CGCA+LPL T+ RGPAP++ G EDI++EALYYFRANVLFRNY+I+ +ADRTLIY+T ++ L+E ++ +ASR L A++NFA PG+AGW LGTLFP E+E FK Y +Q REE+++RL ++Y + ++K W +FSKRKFMG +M
Sbjct: 42 MPAYHSKFAELDADEACGCALLPLRTSKRGPAPVSPDGEEDILDEALYYFRANVLFRNYEIKSAADRTLIYMTLYVTMILRECDRIGSATDASRQLQLSAIRNFAVPGEAGWALGTLFPPPADRNESETFKAYFKQAREEMSERLIAKLYTD-AGKNKWWAMFSKRKFMGIDM 213
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S2RMH4_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMH4_9STRA) HSP 1 Score: 191 bits (484), Expect = 5.530e-58 Identity = 89/174 (51.15%), Postives = 119/174 (68.39%), Query Frame = 3 Query: 45 TMPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
TMP YHSK T + Q CGCA+LPL T VRGPAP +D+++E + +FRANVLFRN++I+ SADRTLIYLT ++QQCLKE E+ E +AL LA++ FA PG W +G+++P S E E K Y +QCREEL +R +++ + S++K W FSKRKFMGKE+
Sbjct: 10 TMPVYHSKFTGQEGQEMCGCALLPLKTRVRGPAPPMPEDEDDVIDETIKFFRANVLFRNFEIKNSADRTLIYLTLYLQQCLKECERAKTVGEGEKALQQLALRQFAIPGDTNWAMGSMYPAPKSTAEGEGCKAYFKQCREELGRRFSQVLFLPDGSKNKWWQAFSKRKFMGKEL 183
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S0Q1V8_9EUKA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V8_9EUKA) HSP 1 Score: 179 bits (454), Expect = 1.440e-53 Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = 3 Query: 57 YHSKQTD-ENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
YHS D +A+V CGC+ILP+ TT RGPAP+A G +DI++E + +F+ANVLF++++++G ADR LIYLT +I QCLK+LE P K EA + LT +A + FA PG + LG+ FP S+QE + + YM+Q REE+ +RL +VY ++ SK W++F+KR+FM K++
Sbjct: 7 YHSSLNDIADAEVVCGCSILPIKTTTRGPAPVASEGEDDIIDETIGFFKANVLFKHFEVKGPADRVLIYLTLYITQCLKKLEGAPSKMEALKTLTAMAHETFALPGDPAFPLGSFFPKPASSQEADLARAYMKQLREEMGRRLLTKVYGDSSEPSKFWLVFAKRRFMNKQL 177
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A0M0JZA5_9EUKA (Actin-related protein 2 3 complex subunit 3 (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZA5_9EUKA) HSP 1 Score: 189 bits (481), Expect = 1.610e-53 Identity = 90/169 (53.25%), Postives = 122/169 (72.19%), Query Frame = 3 Query: 57 YHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKE 563
YHS + DE AQ CGC+ILP+ TT RGPAPLA G EDI++EAL +F+ANVLF++++++G DR +IYLT +I QCL+ LEK P +E +ALT +A ++F PG AG+ LG+ +P SAQE E + Y RQ REE +RL +VY E+ S SK W++F+K+KFM KE
Sbjct: 3 YHSAKNDEEAQQACGCSILPIVTTTRGPAPLAPEGTEDIIDEALGFFKANVLFKHFEVKGGGDRVMIYLTLYITQCLQRLEKCPSPQEGIKALTAMAGESFKIPGDAGFALGSFYPTPASAQEAELCRSYFRQVREETGRRLITKVYGEDGSPSKFWLVFAKKKFMNKE 171
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A8J6CIQ6_DIALT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CIQ6_DIALT) HSP 1 Score: 179 bits (453), Expect = 1.920e-53 Identity = 84/174 (48.28%), Postives = 122/174 (70.11%), Query Frame = 3 Query: 54 AYHSKQTDENAQ-VCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESR--SKHWMLFSKRKFMGKEM 566
A+HS+ DE+A + CGCA+LP+ TT RGPAP G+EDI++E L++F+ANVLFRN+++ GSADR L+YLT ++ +CLK +E P K +A RAL N+A+++FA PG A + LG FP + QE + + Y RQ REE +R+ ++ Y++ E+R SK W SKR+FM K +
Sbjct: 2 AFHSQFKDEDAATIACGCAVLPIRTTCRGPAPSLTAGKEDIIDEVLFFFKANVLFRNFEVRGSADRLLVYLTLYVTECLKRVEAAPSKADAVRALNNMALESFAIPGDASFTLGPYFPTPENRQEADFVRSYFRQLREETGRRVVEKCYIDGETRVPSKWWTSLSKRRFMNKAL 175
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S4BNT7_CHRCT (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BNT7_CHRCT) HSP 1 Score: 177 bits (450), Expect = 4.950e-53 Identity = 82/170 (48.24%), Postives = 121/170 (71.18%), Query Frame = 3 Query: 57 YHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
YHS +A+ CG AILP+ T VRGPAP A +D+++E L++F+ANVLFR+++++G+ADR LIYLT +I QCLK+LE P + A +ALT++A ++F PG AG+ LGT FP ++QE + + Y++Q REE +RL D+VY E+ SK W++F+KR+FM K +
Sbjct: 3 YHSSLNGVDAEAACGLAILPIKTAVRGPAPAAPAESDDVIDETLFFFKANVLFRHFELKGNADRVLIYLTLYITQCLKKLEGLPDRVSALKALTSMAHESFLIPGDAGFALGTFFPSPQTSQEADLTRAYLKQLREETGRRLLDKVYGEDGQPSKFWLVFAKRRFMNKSV 172
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: A0A7S2FM28_9STRA (Actin-related protein 2/3 complex subunit 3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM28_9STRA) HSP 1 Score: 177 bits (449), Expect = 1.060e-52 Identity = 77/173 (44.51%), Postives = 120/173 (69.36%), Query Frame = 3 Query: 48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
MPAYHSK D CGC +LP+ TTVRG AP + EDI++E L +FRAN+ FRN++++G ADRTL+YL+ ++ Q LKEL++ K +A++ L L +++F PG+ GW LG +FP TS + + F+ Y +QC+ E+ +R+ + +Y+ + +++K W +F+KRKFMGK +
Sbjct: 13 MPAYHSKNNDYQGNEACGCLMLPIKTTVRGTAPPCEADDEDIIDETLKFFRANIFFRNFEVKGGADRTLLYLSLYVAQVLKELDRQNDKTQAAKDLHALEIKSFPVPGEQGWTLGGMFPNPTSPADADAFRAYFKQCKVEIGRRVLEILYLPDGTKNKWWNMFAKRKFMGKTL 185
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Match: R1DRS6_EMIHU (Actin-related protein 2/3 complex subunit 3 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DRS6_EMIHU) HSP 1 Score: 176 bits (447), Expect = 1.450e-52 Identity = 87/173 (50.29%), Postives = 117/173 (67.63%), Query Frame = 3 Query: 48 MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFRANVLFRNYQIEGSADRTLIYLTFFIQQCLKELEKHPGKKEASRALTNLAMQNFAAPGQAGWHLGTLFPGGTSAQETEQFKGYMRQCREELAKRLCDRVYVENESRSKHWMLFSKRKFMGKEM 566
M YHS +V CGCAILPL T++RGPA A G EDIV+E L YF+ANVLF++++++G+ADRTLIYLT + QCLK LE P + + +ALT LA + F+APG+ + L + FP G S E + + Y++Q REEL +RL +VY +N SK W+ FSKRKFM K +
Sbjct: 1 MVVYHSSLNGTETEVACGCAILPLKTSIRGPAESAAEGEEDIVDETLGYFKANVLFKHFEVKGAADRTLIYLTLYTTQCLKRLETCPTQTDGVKALTALAHEAFSAPGEPRFALASFFPAGASPAELDLCRAYLKQAREELGRRLALKVYGDNGPPSKLWIAFSKRKFMNKAL 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.864.1 >prot_Ecto-sp6_S_contig102.864.1 ID=prot_Ecto-sp6_S_contig102.864.1|Name=mRNA_Ecto-sp6_S_contig102.864.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=175bp MPAYHSKQTDENAQVCCGCAILPLSTTVRGPAPLAQPGREDIVEEALYYFback to top mRNA from alignment at Ecto-sp6_S_contig102:469580..473847+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.864.1 ID=mRNA_Ecto-sp6_S_contig102.864.1|Name=mRNA_Ecto-sp6_S_contig102.864.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4268bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:469580..473847+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:469580..473847+ >mRNA_Ecto-sp6_S_contig102.864.1 ID=mRNA_Ecto-sp6_S_contig102.864.1|Name=mRNA_Ecto-sp6_S_contig102.864.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:469580..473847+ (Ectocarpus species6 EcLAC_371)back to top |