Homology
BLAST of mRNA_Ecto-sp6_S_contig102.843.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 3.420e-38 Identity = 92/129 (71.32%), Postives = 93/129 (72.09%), Query Frame = 1 Query: 1 MLTEALSPSPPPP----GLSASLASSSRAGVAGVPGDVGGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQDGDGGGGDCGDPVIDLVGDAVDIVGDIGGDGVGGRDEGEVTTSGGNDRLGE 375
MLTEALSPSP PP SRAGVA VPG+ GGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQD DGGGGDCGD VIDLV G RDEGEV TSGGND LGE
Sbjct: 304 MLTEALSPSPSPPLSXXXXXXXXXXXSRAGVADVPGE-GGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQDEDGGGGDCGDSVIDLVXXXXXXXXXXXXXXXGARDEGEVATSGGNDGLGE 431
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 377 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Cds size | 375 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348736.8780217-CDS-Ecto-sp6_S_contig102:180715..181090 | 1682348736.8780217-CDS-Ecto-sp6_S_contig102:180715..181090 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 180716..181090 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.843.1 >prot_Ecto-sp6_S_contig102.843.1 ID=prot_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=125bp
MLTEALSPSPPPPGLSASLASSSRAGVAGVPGDVGGRGDDLGVAAMGGGV
TAFEAEESGVLRALLHALVDGRHQDGDGGGGDCGDPVIDLVGDAVDIVGD
IGGDGVGGRDEGEVTTSGGNDRLGE back to topmRNA from alignment at Ecto-sp6_S_contig102:180716..181090+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig102.843.1 ID=mRNA_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:180716..181090+ (Ectocarpus species6 EcLAC_371)
ATGCTCACGGAGGCTCTCTCGCCATCGCCACCGCCGCCGGGGCTATCGGC
CTCGTTGGCGTCCTCCTCGAGGGCGGGTGTTGCTGGCGTCCCCGGAGACG
TTGGAGGGCGTGGTGATGACCTAGGAGTTGCTGCCATGGGGGGAGGCGTT
ACAGCGTTCGAGGCGGAGGAAAGCGGCGTCCTCAGAGCGCTTCTGCACGC
GCTCGTTGACGGCCGGCATCAGGACGGAGACGGCGGAGGTGGCGACTGCG
GAGATCCCGTCATAGATCTGGTCGGAGATGCCGTAGATATCGTCGGAGAT
ATCGGTGGCGACGGTGTTGGTGGCCGGGACGAAGGAGAGGTAACGACCTC
CGGCGGGAACGACCGGTTGGGGGAG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig102:180716..181090+ >mRNA_Ecto-sp6_S_contig102.843.1 ID=mRNA_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:180716..181090+ (Ectocarpus species6 EcLAC_371)
ATGCTCACGGAGGCTCTCTCGCCATCGCCACCGCCGCCGGGGCTATCGGC
CTCGTTGGCGTCCTCCTCGAGGGCGGGTGTTGCTGGCGTCCCCGGAGACG
TTGGAGGGCGTGGTGATGACCTAGGAGTTGCTGCCATGGGGGGAGGCGTT
ACAGCGTTCGAGGCGGAGGAAAGCGGCGTCCTCAGAGCGCTTCTGCACGC
GCTCGTTGACGGCCGGCATCAGGACGGAGACGGCGGAGGTGGCGACTGCG
GAGATCCCGTCATAGATCTGGTCGGAGATGCCGTAGATATCGTCGGAGAT
ATCGGTGGCGACGGTGTTGGTGGCCGGGACGAAGGAGAGGTAACGACCTC
CGGCGGGAACGACCGGTTGGGGGAG back to top
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