mRNA_Ecto-sp6_S_contig102.843.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.843.1
Unique NamemRNA_Ecto-sp6_S_contig102.843.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.843.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.420e-38
Identity = 92/129 (71.32%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:    1 MLTEALSPSPPPP----GLSASLASSSRAGVAGVPGDVGGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQDGDGGGGDCGDPVIDLVGDAVDIVGDIGGDGVGGRDEGEVTTSGGNDRLGE 375
            MLTEALSPSP PP             SRAGVA VPG+ GGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQD DGGGGDCGD VIDLV               G RDEGEV TSGGND LGE
Sbjct:  304 MLTEALSPSPSPPLSXXXXXXXXXXXSRAGVADVPGE-GGRGDDLGVAAMGGGVTAFEAEESGVLRALLHALVDGRHQDEDGGGGDCGDSVIDLVXXXXXXXXXXXXXXXGARDEGEVATSGGNDGLGE 431
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1B4_9PHAE3.420e-3871.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:180716..181090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size377
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348736.8780217-CDS-Ecto-sp6_S_contig102:180715..1810901682348736.8780217-CDS-Ecto-sp6_S_contig102:180715..181090Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 180716..181090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.843.1prot_Ecto-sp6_S_contig102.843.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 180716..181090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.843.1

>prot_Ecto-sp6_S_contig102.843.1 ID=prot_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=125bp
MLTEALSPSPPPPGLSASLASSSRAGVAGVPGDVGGRGDDLGVAAMGGGV
TAFEAEESGVLRALLHALVDGRHQDGDGGGGDCGDPVIDLVGDAVDIVGD
IGGDGVGGRDEGEVTTSGGNDRLGE
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mRNA from alignment at Ecto-sp6_S_contig102:180716..181090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.843.1 ID=mRNA_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:180716..181090+ (Ectocarpus species6 EcLAC_371)
ATGCTCACGGAGGCTCTCTCGCCATCGCCACCGCCGCCGGGGCTATCGGC
CTCGTTGGCGTCCTCCTCGAGGGCGGGTGTTGCTGGCGTCCCCGGAGACG
TTGGAGGGCGTGGTGATGACCTAGGAGTTGCTGCCATGGGGGGAGGCGTT
ACAGCGTTCGAGGCGGAGGAAAGCGGCGTCCTCAGAGCGCTTCTGCACGC
GCTCGTTGACGGCCGGCATCAGGACGGAGACGGCGGAGGTGGCGACTGCG
GAGATCCCGTCATAGATCTGGTCGGAGATGCCGTAGATATCGTCGGAGAT
ATCGGTGGCGACGGTGTTGGTGGCCGGGACGAAGGAGAGGTAACGACCTC
CGGCGGGAACGACCGGTTGGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:180716..181090+

>mRNA_Ecto-sp6_S_contig102.843.1 ID=mRNA_Ecto-sp6_S_contig102.843.1|Name=mRNA_Ecto-sp6_S_contig102.843.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:180716..181090+ (Ectocarpus species6 EcLAC_371)
ATGCTCACGGAGGCTCTCTCGCCATCGCCACCGCCGCCGGGGCTATCGGC
CTCGTTGGCGTCCTCCTCGAGGGCGGGTGTTGCTGGCGTCCCCGGAGACG
TTGGAGGGCGTGGTGATGACCTAGGAGTTGCTGCCATGGGGGGAGGCGTT
ACAGCGTTCGAGGCGGAGGAAAGCGGCGTCCTCAGAGCGCTTCTGCACGC
GCTCGTTGACGGCCGGCATCAGGACGGAGACGGCGGAGGTGGCGACTGCG
GAGATCCCGTCATAGATCTGGTCGGAGATGCCGTAGATATCGTCGGAGAT
ATCGGTGGCGACGGTGTTGGTGGCCGGGACGAAGGAGAGGTAACGACCTC
CGGCGGGAACGACCGGTTGGGGGAG
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