mRNA_Ecto-sp6_S_contig100.761.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A6H5LDQ8_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDQ8_9PHAE) HSP 1 Score: 412 bits (1058), Expect = 3.600e-142 Identity = 210/219 (95.89%), Postives = 212/219 (96.80%), Query Frame = 1 Query: 16 GYEQRHPGDGTMEEPATDSQAQVSRGDRDPEKGPESADGNEQVDARQPLNYKPLSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
GYEQRHPGDGTMEEPATD QAQVSRGD D EKGPESAD N+QVD RQPLNYKPLSHRKLKDYNEGLAKRGVVYLSR+PPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKK GGNSGKRY EGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER
Sbjct: 35 GYEQRHPGDGTMEEPATDPQAQVSRGDLDSEKGPESADDNDQVDTRQPLNYKPLSHRKLKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKGGGNSGKRYAEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 253
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: D7FRL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL0_ECTSI) HSP 1 Score: 245 bits (626), Expect = 9.440e-80 Identity = 125/137 (91.24%), Postives = 128/137 (93.43%), Query Frame = 1 Query: 49 MEEPATDSQAQVSRGDRDPEKGPESADGNEQVDARQPLNYKPLSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLI 459
MEEPATD QAQVSRGDRDPEKGPESAD NEQVDARQPLNYKPLSHRKLKDYNEGLAKRGVVYLSR+PPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIAR + S L+
Sbjct: 1 MEEPATDPQAQVSRGDRDPEKGPESADDNEQVDARQPLNYKPLSHRKLKDYNEGLAKRGVVYLSRVPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARGQSFSSAEKLL 137
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A2D4BVT2_PYTIN (Pre-rRNA-processing protein ESF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVT2_PYTIN) HSP 1 Score: 224 bits (570), Expect = 1.030e-69 Identity = 107/166 (64.46%), Postives = 132/166 (79.52%), Query Frame = 1 Query: 175 LSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
LS +KL++Y E AKRGVVY+SR+PPFMKP K+KHL+ Q+G + RVYLV ED+A ++ R AGGN +YTEGW+EFEDKK+A++ A LN IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E QAK+EN Y+E VE + F KMEER
Sbjct: 30 LSTKKLEEYRERAAKRGVVYISRVPPFMKPEKLKHLLGQYGAINRVYLVPEDKAQQKRRVAAGGNRKTKYTEGWIEFEDKKVAKSVAAMLNTKQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIREQKLRMEIAQAKKENDAYLERVEQSKQFQKMEER 195
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A5D6Y296_9STRA (RRM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y296_9STRA) HSP 1 Score: 214 bits (546), Expect = 3.300e-66 Identity = 105/166 (63.25%), Postives = 126/166 (75.90%), Query Frame = 1 Query: 175 LSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
LS KL+ + + KRGVVYLSR+PPFMKP KVKHL+ Q G + R+YLV ED+ N + R AGGN + YTEGW+EFEDKK+AR A LN IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLRLE QAK+EN Y++ VE + F KMEER
Sbjct: 22 LSREKLEAFKKRADKRGVVYLSRVPPFMKPEKVKHLLGQFGDINRIYLVPEDKTNHKKRVAAGGNRKQSYTEGWIEFEDKKVARQVAAVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRLEIAQAKKENEAYLDKVEQSKQFEKMEER 187
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A8K1FEZ1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEZ1_PYTOL) HSP 1 Score: 213 bits (543), Expect = 1.210e-65 Identity = 101/166 (60.84%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 175 LSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
LS KL +Y E +AKRGVVY+SR+PP+MKP K+KHL+ ++G + R+YLV ED+ ++ R AGGN +YTEGWVEFE+KK+A+ A LN IGGRKR+YYHDD+WNLKYL+ FKW+HLTEK+AYE R+R QKLR+E QAK+EN Y+E VE + F KMEER
Sbjct: 30 LSKAKLDEYRERVAKRGVVYISRVPPYMKPEKLKHLLSKYGDINRIYLVPEDKVQQKKRVAAGGNRKTKYTEGWVEFENKKVAKTVATMLNTKQIGGRKRDYYHDDIWNLKYLKGFKWEHLTEKIAYENRIRDQKLRMEIAQAKKENDAYLERVEQSKQFTKMEER 195
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: K3WDP5_GLOUD (RRM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WDP5_GLOUD) HSP 1 Score: 213 bits (543), Expect = 1.810e-65 Identity = 104/178 (58.43%), Postives = 133/178 (74.72%), Query Frame = 1 Query: 145 DARQPLNYKPL--SHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
DA++P L S K++ + + KRGVVY+SR+PPFMKP KVKHL+ Q+G + R+YLV ED+ + + R AGGN + YTEGW+EFEDKK+A+ A+ LN IGGRKR+YYHDD+WNLKYL+ FKWDHLTEK+AYE R+R QKLR+E QAK+EN Y+E VE + F KMEER
Sbjct: 24 DAKKPAKRSKLDLSREKMEQFKKKAEKRGVVYISRVPPFMKPEKVKHLLGQYGDINRIYLVPEDKTHHKKRVAAGGNRKQSYTEGWIEFEDKKVAKQVAKVLNTRQIGGRKRDYYHDDIWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLEKVEQSKKFEKMEER 201
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A7S1TZ85_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ85_9STRA) HSP 1 Score: 209 bits (532), Expect = 2.520e-64 Identity = 99/168 (58.93%), Postives = 132/168 (78.57%), Query Frame = 1 Query: 169 KPLSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
K L L +YN +A+RGV+YLSRIPPFMKP KV+HL+ HG VTRV+L ED++NR+AR+++GG+ KRY EGWVEF +KK+A+ A SLNNT IGG +R+YYH+D+WN+KYL+ FKWDHLTEK+AYERRVR ++R E +QA+RENA ++L + G++ ME R
Sbjct: 35 KTLDAAALAEYNAKMARRGVLYLSRIPPFMKPQKVRHLLAVHGEVTRVFLAAEDRSNRKARRRSGGSKAKRYDEGWVEFAEKKVAKRVALSLNNTKIGGSRRSYYHEDIWNIKYLKGFKWDHLTEKLAYERRVREHRMRAEMLQARRENAMLLDLADQGKALRAMEGR 202
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: H3HB09_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB09_PHYRM) HSP 1 Score: 209 bits (533), Expect = 3.670e-64 Identity = 97/166 (58.43%), Postives = 130/166 (78.31%), Query Frame = 1 Query: 175 LSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
LS K++ + E +RGVVY++R+PPFMKP K++HL+ ++G + R+YLV ED++ + R AGGN ++YTEGW+EFEDKK+A+ A+ LN TLIGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E QAK+EN Y+E V+ + F KM+ R
Sbjct: 21 LSREKMEQFKEMAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKSLHKKRVSAGGNRRQKYTEGWLEFEDKKVAKRVAKMLNTTLIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVDQSKQFEKMDAR 186
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: A0A3R7J166_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J166_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.450e-64 Identity = 100/183 (54.64%), Postives = 133/183 (72.68%), Query Frame = 1 Query: 133 NEQVDARQPLNYKPL---SHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
N + + +P +KPL S K++ + + KRGVVY++R+PPFMKP K++HL+ ++G + R+YLV ED+ + R AGGN YTEGW+EFEDKKIA+ A+ LN T IGGRKR+YYHDDMWN KYL+ FKWDHLTEK+AYE R+R QKLR+E Q+K+EN Y+E V+ + F KME R
Sbjct: 3 NMEASSSKPATHKPLEGLSREKMEQFKQKAEKRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKVLHKKRVSAGGNRRTNYTEGWIEFEDKKIAKRVAKMLNTTQIGGRKRDYYHDDMWNFKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQSKKENEAYLERVDQSKQFEKMEAR 185
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Match: D0MVG4_PHYIT (Pre-rRNA-processing protein ESF2 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVG4_PHYIT) HSP 1 Score: 209 bits (531), Expect = 6.910e-64 Identity = 97/166 (58.43%), Postives = 129/166 (77.71%), Query Frame = 1 Query: 175 LSHRKLKDYNEGLAKRGVVYLSRIPPFMKPAKVKHLMEQHGVVTRVYLVEEDQANRRARKKAGGNSGKRYTEGWVEFEDKKIARATAESLNNTLIGGRKRNYYHDDMWNLKYLRKFKWDHLTEKVAYERRVRSQKLRLETMQAKRENARYVELVESGRSFAKMEER 672
LS K++ + E +RGVVY++R+PPFMKP K++HL+ ++G + R+YLV ED+A + R +GGN ++YTEGW+EFE+KK+A+ A+ LN T IGGRKR+YYHDDMWNLKYL+ FKWDHLTEK+AYE R+R QKLR+E QAK+EN Y+E VE + F KME R
Sbjct: 21 LSREKMEQFKEKAERRGVVYIARVPPFMKPEKLRHLLGKYGELNRIYLVPEDKALHKKRVSSGGNRRQKYTEGWIEFENKKVAKRVAKMLNTTQIGGRKRDYYHDDMWNLKYLKGFKWDHLTEKIAYENRIRDQKLRMEIAQAKKENEAYLERVEQSKQFEKMEAR 186 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.761.1 >prot_Ecto-sp6_S_contig100.761.1 ID=prot_Ecto-sp6_S_contig100.761.1|Name=mRNA_Ecto-sp6_S_contig100.761.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=261bp PRESGGYEQRHPGDGTMEEPATDSQAQVSRGDRDPEKGPESADGNEQVDAback to top mRNA from alignment at Ecto-sp6_S_contig100:579672..587036+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.761.1 ID=mRNA_Ecto-sp6_S_contig100.761.1|Name=mRNA_Ecto-sp6_S_contig100.761.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7365bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:579672..587036+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:579672..587036+ >mRNA_Ecto-sp6_S_contig100.761.1 ID=mRNA_Ecto-sp6_S_contig100.761.1|Name=mRNA_Ecto-sp6_S_contig100.761.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:579672..587036+ (Ectocarpus species6 EcLAC_371)back to top |