mRNA_Ecto-sp13_S_contig1545.4076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1545.4076.1
Unique NamemRNA_Ecto-sp13_S_contig1545.4076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: D8LNX5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.470e-55
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1
Query:    1 SRSFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAGQ 297
            S SFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMD+DNLPALMLHALQGLTQAGQ
Sbjct:  127 SISFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDDDNLPALMLHALQGLTQAGQ 225          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S2R6W5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6W5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.910e-13
Identity = 44/78 (56.41%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   40 LDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHAL 273
            LD ++G AR      D  D A D LS AIA  P F PALVEKARLL A GDWEQA    SRVL  D DN+ AL L  L
Sbjct:  193 LDALLGIARVHELHEDW-DAAGDALSSAIARSPSFAPALVEKARLLLAKGDWEQALATTSRVLVQDPDNVQALRLQCL 269          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A1Y1IE71_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE71_KLENI)

HSP 1 Score: 68.2 bits (165), Expect = 3.300e-11
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    7 SFFEG--SGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
            +FFE    G  RDL+ ++G+ + +  + +  + A +H++  I     F P L EKA+LL AVGDWEQA +   R+L +D  N+ AL L AL  L+Q
Sbjct:  178 AFFEEVLGGNERDLEAMLGQVKCWEVKKE-YNRALEHINQVIVAHSWFIPGLTEKAKLLVAVGDWEQAMEVAQRILTVDPANIDALRLSALYLLSQ 272          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A6U5AVN5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5AVN5_HEMAN)

HSP 1 Score: 67.0 bits (162), Expect = 8.400e-11
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHAL 273
            D+D ++G+ARY       +D A + L+  +   P F PAL EKAR+L A+GDW+QA DA +R L +  +N+ +L L  L
Sbjct:  184 DVDAVLGRARYHEQVTKELDAAVEELNQCVVQFPWFTPALSEKARVLMALGDWDQAIDASNRSLTLTPNNIESLRLSVL 262          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S0S5T6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S5T6_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 2.140e-10
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
            DL+ ++G+++    R   +  A + L+        F PALVEKARLL AVGDWEQA D I  +L++D  N+ AL   AL  +T+ G
Sbjct:  186 DLEAMLGRSKVAEVR-HNLSGALEGLTEVAVRFSWFMPALVEKARLLLAVGDWEQANDTIHSILSVDPQNIMALAWQALHAITREG 270          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: L1J727_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J727_GUITC)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-9
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
            D++ ++GKA  F  R   +  A + ++  I     F PA+ EKARLL A GDW+QA ++++R L +D +NL ALM+ AL  L +
Sbjct:  185 DIEAVLGKAA-FLERYKPLPEAIEFMNQFIVKFSWFAPAITEKARLLIAGGDWDQAIESVNRALNLDGNNLDALMMSALHALVK 267          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A8B7XVD7_ACAPL (tetratricopeptide repeat protein 21B-like isoform X1 n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B7XVD7_ACAPL)

HSP 1 Score: 63.2 bits (152), Expect = 1.890e-9
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 SRSFFEG--SGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
            S  +FE   SG  ++++ ++GKARYF  R      A D ++ A+   P F PAL+EK RLL A+ DWEQ  +   R L+  ++   A+ +  L  L + G
Sbjct:  166 SGKYFEEALSGASKNVEALIGKARYFTLR-HNYSGALDQINQAVVSYPGFMPALIEKMRLLMALQDWEQTLETAQRALSQQSNCFEAIRVEILHLLCRDG 264          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A835YQQ5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YQQ5_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 6.580e-9
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
            DL  ++GKA+    + + +    D L+        F PALVEK RLL AVGDWEQ  +++ RVLA D  N+ AL    +  LT+ G
Sbjct:  130 DLQALLGKAKVLECKKN-LGACIDVLAEVNVRFGWFVPALVEKCRLLMAVGDWEQVTESLQRVLASDGQNIMALAWQCMLSLTREG 214          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A8J2X041_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X041_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-7
Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFW-PALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
            DL+++M +A Y+      + +A D L+ A+AL+   W PAL+EKA++L  +GDWEQA + + RVL  +  ++  L L+ L  + Q
Sbjct:  161 DLESLMARACYYELMKQYL-SALDFLNQAVALQS--WSPALLEKAKVLVHLGDWEQAAETLQRVLQQNEGSMEGLRLNVLMHMVQ 242          
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S3NEL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NEL9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.150e-7
Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   34 RDLDTIMGKARYFA--TRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDN---LPALMLHALQGL 282
            RD+D ++ +A+ +A  +  + ++ A +HL+ A ALE  + PA++ KA+LL A+GDWEQ+ D  SR++   +++   + AL + AL  L
Sbjct:   74 RDVDWLLARAKSYAIGSTPEKLELALEHLNQATALENGWIPAIMLKAKLLLALGDWEQSRDTASRLINEKDESKSSVEALQILALYEL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LNX5_ECTSI2.470e-5597.98Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S2R6W5_9STRA7.910e-1356.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Y1IE71_KLENI3.300e-1139.58Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A6U5AVN5_HEMAN8.400e-1141.77Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0S5T6_9CHLO2.140e-1041.86Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
L1J727_GUITC1.020e-940.48Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A8B7XVD7_ACAPL1.890e-936.00tetratricopeptide repeat protein 21B-like isoform ... [more]
A0A835YQQ5_9CHLO6.580e-940.70Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A8J2X041_9STRA2.030e-737.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NEL9_9STRA3.150e-736.36Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1545contigEcto-sp13_S_contig1545:427..1499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score177.6
Seed ortholog evalue2.7e-42
Seed eggNOG ortholog2880.D8LNX5
Preferred nameTTC21B
Model size301
KEGG koko:K19673
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008589,GO:0009889,GO:0009953,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010646,GO:0010970,GO:0016043,GO:0019219,GO:0019222,GO:0021591,GO:0021798,GO:0021871,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030705,GO:0030900,GO:0030990,GO:0030991,GO:0031323,GO:0031326,GO:0031503,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035721,GO:0035735,GO:0042073,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048513,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903506,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.intraciliary retrograde transport
EggNOG OGs28HZH@1,2QQAB@2759
Cds size270
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.6564174-UTR-Ecto-sp13_S_contig1545:426..4561681462820.6564174-UTR-Ecto-sp13_S_contig1545:426..456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1545 427..456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462820.719476-CDS-Ecto-sp13_S_contig1545:456..4991681462820.719476-CDS-Ecto-sp13_S_contig1545:456..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 457..499 +
1681462820.7324646-CDS-Ecto-sp13_S_contig1545:972..11001681462820.7324646-CDS-Ecto-sp13_S_contig1545:972..1100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 973..1100 +
1681462820.7416296-CDS-Ecto-sp13_S_contig1545:1400..14991681462820.7416296-CDS-Ecto-sp13_S_contig1545:1400..1499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1545 1401..1499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1545.4076.1prot_Ecto-sp13_S_contig1545.4076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1545 457..1499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1545.4076.1

>prot_Ecto-sp13_S_contig1545.4076.1 ID=prot_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLA
AVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAGQA
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mRNA from alignment at Ecto-sp13_S_contig1545:427..1499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1545.4076.1 ID=mRNA_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:427..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGCAGCTTCTTCGAGGGCAGCGGGCAAATGCGCGACCTCGACACAAT AATGGGGAAAGCTCGATATTTCGGTGAGAAAACTAAACTGCTAGGAGATG TGCATGGTGCCATTGTTTTACTTCGAAATCTGTACATATAACATCGACCA GAGTTAAGATCCAAATCGGCACTCGGGGCTCACGGGGCTGTTTTAGATTT ACTTCTGAAGGTGAGCAGTGACACCGGCTGGGAAAAAAACACCTATAGAG GTGGAAGCTACGATCTTACACAGCGCTTCACGGAAAAAAACAATTTTCGT TCCAAAAACACGGAGCTTTTCAGGACCGAACTAATCCACATAGAAAAATA GGATGCTCGTCGCAAACTCAGTGGTCATTTCTAAAGAAAAGGAGCGAGAG ACGCGAAGAGCGAGAGAGAAAGGGAAACACGCGGTCACATGCTTCTCCGC AATGTTCGTCGTTGTTCTGAAGCCAGCAGCGATACTAACGTGTGGATTCC TGGATGTCGTGCGTTTTGATATGCAATCGCGCCGCCCACCCCTCAGCGAC TCGTCTAGATGGGGTGGACACAGCCGCCGACCACCTGAGCCACGCCATCG CTCTCGAACCCCGCTTTTGGCCTGCACTAGTAGAAAAGGCCAGACTTTTG GCGGCTGTGGGAGACTGGGAACAGGTGCGCAATGCTGCCAAGACGGGGGC TGGAGTGGGTAGTGCTACCATGTTCAACGTGAAGCGACAAAGTTCGACTC ATCGATGTGTACCAGACCCACCACCACAATGCCCCACCGTATCGCAATCG TTTCTCACGCAGTTAGCAATCAACACCTCCTCCGGCAGGATAGAGCGTCG TGTGGCAGACGAGGTTCGTGCCCAACGGCATTTCATTACAGAGACGACAC GCTGGCGTTTTCCCAAATGATGCCGGCCTAAAAAATCTCTCCTTCACCCG GTCGCCCGGCTCGAACGAGGTCAGGCTGAGGACGCGATATCGAGGGTGCT GGCAATGGACAACGACAACCTGCCGGCGCTAATGTTGCATGCCCTCCAAG GGCTCACACAGGCTGGGCAGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1545:427..1499+

>mRNA_Ecto-sp13_S_contig1545.4076.1 ID=mRNA_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:427..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGACCTCGACACAATAATGGGGAAAGCTCGATATTTCGCGACTCG
TCTAGATGGGGTGGACACAGCCGCCGACCACCTGAGCCACGCCATCGCTC
TCGAACCCCGCTTTTGGCCTGCACTAGTAGAAAAGGCCAGACTTTTGGCG
GCTGTGGGAGACTGGGAACAGGCTGAGGACGCGATATCGAGGGTGCTGGC
AATGGACAACGACAACCTGCCGGCGCTAATGTTGCATGCCCTCCAAGGGC
TCACACAGGCTGGGCAGGCA
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