mRNA_Ecto-sp13_S_contig1545.4076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: D8LNX5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX5_ECTSI) HSP 1 Score: 194 bits (492), Expect = 2.470e-55 Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1
Query: 1 SRSFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAGQ 297
S SFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMD+DNLPALMLHALQGLTQAGQ
Sbjct: 127 SISFFEGSGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDDDNLPALMLHALQGLTQAGQ 225
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S2R6W5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6W5_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.910e-13 Identity = 44/78 (56.41%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 40 LDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHAL 273
LD ++G AR D D A D LS AIA P F PALVEKARLL A GDWEQA SRVL D DN+ AL L L
Sbjct: 193 LDALLGIARVHELHEDW-DAAGDALSSAIARSPSFAPALVEKARLLLAKGDWEQALATTSRVLVQDPDNVQALRLQCL 269
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A1Y1IE71_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE71_KLENI) HSP 1 Score: 68.2 bits (165), Expect = 3.300e-11 Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 7 SFFEG--SGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
+FFE G RDL+ ++G+ + + + + + A +H++ I F P L EKA+LL AVGDWEQA + R+L +D N+ AL L AL L+Q
Sbjct: 178 AFFEEVLGGNERDLEAMLGQVKCWEVKKE-YNRALEHINQVIVAHSWFIPGLTEKAKLLVAVGDWEQAMEVAQRILTVDPANIDALRLSALYLLSQ 272
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A6U5AVN5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U5AVN5_HEMAN) HSP 1 Score: 67.0 bits (162), Expect = 8.400e-11 Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHAL 273
D+D ++G+ARY +D A + L+ + P F PAL EKAR+L A+GDW+QA DA +R L + +N+ +L L L
Sbjct: 184 DVDAVLGRARYHEQVTKELDAAVEELNQCVVQFPWFTPALSEKARVLMALGDWDQAIDASNRSLTLTPNNIESLRLSVL 262
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S0S5T6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S5T6_9CHLO) HSP 1 Score: 65.9 bits (159), Expect = 2.140e-10 Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
DL+ ++G+++ R + A + L+ F PALVEKARLL AVGDWEQA D I +L++D N+ AL AL +T+ G
Sbjct: 186 DLEAMLGRSKVAEVR-HNLSGALEGLTEVAVRFSWFMPALVEKARLLLAVGDWEQANDTIHSILSVDPQNIMALAWQALHAITREG 270
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: L1J727_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J727_GUITC) HSP 1 Score: 63.9 bits (154), Expect = 1.020e-9 Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
D++ ++GKA F R + A + ++ I F PA+ EKARLL A GDW+QA ++++R L +D +NL ALM+ AL L +
Sbjct: 185 DIEAVLGKAA-FLERYKPLPEAIEFMNQFIVKFSWFAPAITEKARLLIAGGDWDQAIESVNRALNLDGNNLDALMMSALHALVK 267
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A8B7XVD7_ACAPL (tetratricopeptide repeat protein 21B-like isoform X1 n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B7XVD7_ACAPL) HSP 1 Score: 63.2 bits (152), Expect = 1.890e-9 Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 1 SRSFFEG--SGQMRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
S +FE SG ++++ ++GKARYF R A D ++ A+ P F PAL+EK RLL A+ DWEQ + R L+ ++ A+ + L L + G
Sbjct: 166 SGKYFEEALSGASKNVEALIGKARYFTLR-HNYSGALDQINQAVVSYPGFMPALIEKMRLLMALQDWEQTLETAQRALSQQSNCFEAIRVEILHLLCRDG 264
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A835YQQ5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YQQ5_9CHLO) HSP 1 Score: 61.6 bits (148), Expect = 6.580e-9 Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQAG 294
DL ++GKA+ + + + D L+ F PALVEK RLL AVGDWEQ +++ RVLA D N+ AL + LT+ G
Sbjct: 130 DLQALLGKAKVLECKKN-LGACIDVLAEVNVRFGWFVPALVEKCRLLMAVGDWEQVTESLQRVLASDGQNIMALAWQCMLSLTREG 214
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A8J2X041_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X041_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.030e-7 Identity = 32/85 (37.65%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 37 DLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFW-PALVEKARLLAAVGDWEQAEDAISRVLAMDNDNLPALMLHALQGLTQ 288
DL+++M +A Y+ + +A D L+ A+AL+ W PAL+EKA++L +GDWEQA + + RVL + ++ L L+ L + Q
Sbjct: 161 DLESLMARACYYELMKQYL-SALDFLNQAVALQS--WSPALLEKAKVLVHLGDWEQAAETLQRVLQQNEGSMEGLRLNVLMHMVQ 242
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Match: A0A7S3NEL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NEL9_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.150e-7 Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 34 RDLDTIMGKARYFA--TRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAAVGDWEQAEDAISRVLAMDNDN---LPALMLHALQGL 282
RD+D ++ +A+ +A + + ++ A +HL+ A ALE + PA++ KA+LL A+GDWEQ+ D SR++ +++ + AL + AL L
Sbjct: 74 RDVDWLLARAKSYAIGSTPEKLELALEHLNQATALENGWIPAIMLKAKLLLALGDWEQSRDTASRLINEKDESKSSVEALQILALYEL 161 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1545.4076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1545.4076.1 >prot_Ecto-sp13_S_contig1545.4076.1 ID=prot_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp MRDLDTIMGKARYFATRLDGVDTAADHLSHAIALEPRFWPALVEKARLLAback to top mRNA from alignment at Ecto-sp13_S_contig1545:427..1499+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1545.4076.1 ID=mRNA_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:427..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1545:427..1499+ >mRNA_Ecto-sp13_S_contig1545.4076.1 ID=mRNA_Ecto-sp13_S_contig1545.4076.1|Name=mRNA_Ecto-sp13_S_contig1545.4076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1545:427..1499+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |