mRNA_Ecto-sp13_S_contig15312.3996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15312.3996.1
Unique NamemRNA_Ecto-sp13_S_contig15312.3996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.860e-18
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  133 RVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPEVYKWNGKGKKRKA 312
            RVLCIPASQ  +ERVFS+AG VVT TR+R+DPE+VELM+FLR+VL EV +WNG G KRK+
Sbjct:  428 RVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWNGNGNKRKS 487          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.510e-18
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   97 AREYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPEV 276
            AREYP LA+LARRVLCIPA QA +ERVFS+AG VVT TR+R+DPE+V LMVFLR+  PE+
Sbjct:  488 AREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPPEL 547          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.250e-16
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query:  103 EYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPEVYKWNGKGKKRK 309
            EYP+LAALARRVL IP+SQA +ERVFS AG  VTPTRSRL  E+VEL+V+LR+V   V +W     ++K
Sbjct:  493 EYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSATRKK 561          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: R7TXQ1_CAPTE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TXQ1_CAPTE)

HSP 1 Score: 64.3 bits (155), Expect = 1.730e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  100 REYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFL 255
            R +P +A LA++ L IPA+ A +ERVFS AG +VTP RSRL+PE V ++VFL
Sbjct:    4 RNFPRIALLAKKYLAIPATSAPSERVFSTAGNIVTPKRSRLNPEKVNMLVFL 55          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: UPI000DC13F08 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13F08)

HSP 1 Score: 66.6 bits (161), Expect = 8.300e-11
Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   97 ARE--YPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVL 267
            ARE  YP ++ LA+++LCIPAS A +ERVFS AG ++TP R+++ P H+  +VFL++ L
Sbjct:  184 ARENVYPTISVLAKKILCIPASSASSERVFSRAGNIITPKRNKMTPHHLSALVFLKNNL 242          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: A0A8B8G1X1_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8G1X1_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 9.390e-11
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   97 ARE--YPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRS 261
            ARE  YP ++ LA+ +LCIPAS A +ERVFS AG ++TP R+R+ P H+  +VFL++
Sbjct:  123 ARENVYPKISVLAKNILCIPASSASSERVFSTAGNIITPKRNRMTPYHLSALVFLKN 179          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: UPI001C04A074 (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04A074)

HSP 1 Score: 67.4 bits (163), Expect = 1.160e-10
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   97 AREYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVLPEVYK 282
            A EYP+LA LARR LC+P +   +ERVFS AG +VT  RS L P+HV+ ++FL+  L  V K
Sbjct:  561 AGEYPLLACLARRYLCVPGTSVSSERVFSTAGDIVTAQRSCLTPQHVDQLLFLQKNLAVVNK 622          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: UPI000B933A0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B933A0F)

HSP 1 Score: 63.9 bits (154), Expect = 1.520e-10
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query:  106 YPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLR 258
            YP LA LA+++LCIPAS A +ERVFS AG +++P R+R+ P H+  +VFL+
Sbjct:   81 YPTLAVLAKQILCIPASSASSERVFSTAGNILSPKRNRITPCHLSALVFLK 131          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: UPI0007B8209D (zinc finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=UPI0007B8209D)

HSP 1 Score: 63.9 bits (154), Expect = 3.050e-10
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  103 EYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFL 255
             +P LA LARR LCIPA+   +ERVFSAAG  VT  RSRL P+HV +++FL
Sbjct:  117 RFPGLAKLARRYLCIPATSVPSERVFSAAGLTVTRLRSRLTPDHVNMLIFL 167          
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Match: UPI001BD4DD18 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD4DD18)

HSP 1 Score: 63.9 bits (154), Expect = 3.050e-10
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  103 EYPMLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRSVL 267
            EYP+LA LA+R LC+P +   AERVFS AG +VT  RS L  EHV+ ++FL   L
Sbjct:  112 EYPLLAKLAKRYLCVPGTSVSAERVFSTAGDIVTAQRSSLTTEHVDQLLFLHKNL 166          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15312.3996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJV8_9PHAE2.860e-1871.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.510e-1873.33Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI6.250e-1662.32Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
R7TXQ1_CAPTE1.730e-1157.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ca... [more]
UPI000DC13F088.300e-1150.85zinc finger BED domain-containing protein 1-like n... [more]
A0A8B8G1X1_9HEMI9.390e-1152.63zinc finger BED domain-containing protein 1-like n... [more]
UPI001C04A0741.160e-1053.23E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanota... [more]
UPI000B933A0F1.520e-1054.90zinc finger BED domain-containing protein 1-like n... [more]
UPI0007B8209D3.050e-1060.78zinc finger BED domain-containing protein 1-like n... [more]
UPI001BD4DD183.050e-1054.55E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cheilinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15312contigEcto-sp13_S_contig15312:2187..2543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score76.3
Seed ortholog evalue6.3e-12
Seed eggNOG ortholog2880.D8LCS5
Model size357
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size204
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.2950242-UTR-Ecto-sp13_S_contig15312:2186..22971681462815.2950242-UTR-Ecto-sp13_S_contig15312:2186..2297Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15312 2187..2297 +
1681462815.3183367-UTR-Ecto-sp13_S_contig15312:2501..25431681462815.3183367-UTR-Ecto-sp13_S_contig15312:2501..2543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig15312 2502..2543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462815.3046906-CDS-Ecto-sp13_S_contig15312:2297..25011681462815.3046906-CDS-Ecto-sp13_S_contig15312:2297..2501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15312 2298..2501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15312.3996.1prot_Ecto-sp13_S_contig15312.3996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15312 2298..2501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15312.3996.1

>prot_Ecto-sp13_S_contig15312.3996.1 ID=prot_Ecto-sp13_S_contig15312.3996.1|Name=mRNA_Ecto-sp13_S_contig15312.3996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MLAALARRVLCIPASQAHAERVFSAAGQVVTPTRSRLDPEHVELMVFLRS
VLPEVYKWNGKGKKRKA*
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mRNA from alignment at Ecto-sp13_S_contig15312:2187..2543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15312.3996.1 ID=mRNA_Ecto-sp13_S_contig15312.3996.1|Name=mRNA_Ecto-sp13_S_contig15312.3996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15312:2187..2543+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCAAGACAACACCTGGGGTAGACATGTCGAGCTATGACAAGGAGGGCA AGGTTGTTCTAGGGGACCCACTGCAGTGGTCGCTTGTTAAGGCGCGGCGC GGGAATACCCCATGCTGGCCGCACTGGCACGCCGGGTGTTGTGCATTCCC GCGTCCCAAGCGCACGCCGAACGTGTGTTTTCGGCGGCGGGACAAGTCGT AACCCCGACACGTTCTCGGCTCGACCCCGAACACGTAGAGCTCATGGTAT TCCTTCGCTCTGTCCTCCCCGAGGTATACAAGTGGAATGGGAAGGGGAAG AAGAGGAAAGCCTAGGAAGAGCGGCAGCGTTCGGAGTTGCTCGCGTGCGA TACGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15312:2187..2543+

>mRNA_Ecto-sp13_S_contig15312.3996.1 ID=mRNA_Ecto-sp13_S_contig15312.3996.1|Name=mRNA_Ecto-sp13_S_contig15312.3996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15312:2187..2543+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCCGCACTGGCACGCCGGGTGTTGTGCATTCCCGCGTCCCAAGC
GCACGCCGAACGTGTGTTTTCGGCGGCGGGACAAGTCGTAACCCCGACAC
GTTCTCGGCTCGACCCCGAACACGTAGAGCTCATGGTATTCCTTCGCTCT
GTCCTCCCCGAGGTATACAAGTGGAATGGGAAGGGGAAGAAGAGGAAAGC
CTAG
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