mRNA_Ecto-sp13_S_contig15172.3901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig15172.3901.1
Unique NamemRNA_Ecto-sp13_S_contig15172.3901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.510e-99
Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 1
Query:   58 MARRRHRAGPVRFVSSTAWFVGALVLLLRRSAWEGGVAAQQDNDDG----STSAPAALYPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
            MARRR RAGPVRFV+S AWFVGALVLLLRRSAWEGGVAAQ+D+DDG    STSAP ALYPDCEADMALVGDSLCD   NVAECGFDGGDCCECTCVDTGDQVCGEGG GYFCVDPDAPQDCAS+PSPTPNTPSSPT SSDA+ VTAGPTSLDASDDPYPGCGGYIPHIG+
Sbjct:    1 MARRRRRAGPVRFVASRAWFVGALVLLLRRSAWEGGVAAQEDSDDGNDGGSTSAPTALYPDCEADMALVGDSLCDFDVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPT-SSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGD 169          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 3.050e-97
Identity = 151/172 (87.79%), Postives = 156/172 (90.70%), Query Frame = 1
Query:   58 MARRRHRAGPVRFVSSTAWFVGALVLLLRRSAWEGGVAAQQD------NDDGSTSAPAALYPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
            MARRRHRAGPVRFV+S AW VGALVLLLRRSAWE GV AQQ       NDDG TSAPAALYPDCEAD ALVGDS+CDL FNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPS+PT SSDA+ VTAGPTSLDASDDPYPGCGGYIPHIG+
Sbjct:    1 MARRRHRAGPVRFVASRAWCVGALVLLLRRSAWESGVVAQQGSDDGNGNDDGGTSAPAALYPDCEADTALVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSAPT-SSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGD 171          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.670e-13
Identity = 55/129 (42.64%), Postives = 64/129 (49.61%), Query Frame = 1
Query:  184 NDDGSTSAPAAL--YPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDT---GDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
            +D G T +PAA   YPDCE  +    D +CD   N A CG+DGGDCC CTC D    G   CG  G  Y C+DPDAP  C S  SPTP    SP   +D                 +P C GYI  IG+
Sbjct:  128 DDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWGYSTCGYYG--YDCMDPDAPSAC-STDSPTP----SPAAGTD-----------------WPECEGYIYMIGD 232          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.680e-13
Identity = 55/130 (42.31%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  184 NDDGSTSAPAAL--YPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGD----QVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
            +D G T +PAA   YPDCE  +    D +CD   N AECG+DGGDCC CTC D         CG  G  Y C+DPDAP  C S  SPTP    SP   +D                 +P C GYI  IG+
Sbjct:  128 DDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYG--YDCMDPDAPSSC-STDSPTP----SPAAGTD-----------------WPECEGYIYMIGD 233          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.740e-12
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query:  238 DMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDA 396
            D + VGD  CD   N AECG+DGGDCCECTCV  G+  CG GG  Y C+DP A
Sbjct:   43 DESAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGG--YACIDPAA 93          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-10
Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 1
Query:  217 LYPDCEADMALVGDSLCDLGFN-VAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVD---PDAPQDCASAPSPTP 432
            LYPDCE ++ L+GD  CD   N + ECGFDGGDCCEC CV   D    E    Y CV     D    C   P+PTP
Sbjct:    4 LYPDCEGELDLIGDGYCDDATNNLEECGFDGGDCCECDCVIPADAS--EDQLAYSCVQFSCDDTSSACYVVPAPTP 77          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5JX54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.320e-10
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  217 LYPDCEA---DMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCAS-APSPTP 432
            LYPDC +    +  +G+  C  G N  ECG+DGGDCCEC C  T +  CG  G  Y C DP +P +C    P+P+P
Sbjct:  209 LYPDCVSRGGTLEWIGNGACYWGNNFEECGYDGGDCCECDCESTLESHCGVNG--YDCADPSSPSECTEDVPTPSP 282          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 51/116 (43.97%), Postives = 56/116 (48.28%), Query Frame = 1
Query:  100 SSTAWFVGALVLLLRRSAWEGGVAAQQDNDDGSTSAPAA-LYPDCEADMALVGDSLCDLGFN-VAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVD---PDAPQDCASAPSPTP 432
            S   W V ALV L   SA  G VA        STS     LYPDCE ++  +GD  CD   N + ECGFDGGDCCEC CV   D    E    Y CV     D    C   P+PTP
Sbjct:    8 SRARWAVVALVAL---SAGCGRVATAT-----STSVDLIDLYPDCEGELDHIGDGYCDDATNNLEECGFDGGDCCECDCVVPADAS--EDQLAYSCVQFSCDDTSSACYVVPAPTP 113          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.170e-9
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  250 VGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDA 396
            +G+  C++G N+ ECGFDGGDCCECTC D G+  CG+  G Y C+DPDA
Sbjct:   98 IGNGRCNMGNNIEECGFDGGDCCECTCED-GEYTCGQYYG-YACIDPDA 144          
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.820e-9
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1
Query:  244 ALVGDSLCDLGFNVAECGFDGGDCCECTCVDT--GDQ--VCGEGGGGYFCVDPDAP 399
            AL GD  C    N AECG+DGGDCCECTC +   GD   +C + G G+ CVDPDAP
Sbjct:   34 ALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAP 89          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX76_ECTSI1.510e-9988.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP4_9PHAE3.050e-9787.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6K0_9PHAE5.670e-1342.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX77_ECTSI5.680e-1342.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L262_9PHAE2.740e-1260.38LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9A3_ECTSI1.760e-1048.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX54_9PHAE4.320e-1044.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K995_9PHAE1.020e-943.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI3.170e-959.18Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI4.820e-957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig15172contigEcto-sp13_S_contig15172:100..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score304.3
Seed ortholog evalue3.9e-80
Seed eggNOG ortholog2880.D7FX76
Model size555
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2E9KF@1,2SFXU@2759
Cds size555
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462807.389353-CDS-Ecto-sp13_S_contig15172:99..3381681462807.389353-CDS-Ecto-sp13_S_contig15172:99..338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15172 100..338 -
1681462807.400177-CDS-Ecto-sp13_S_contig15172:692..10081681462807.400177-CDS-Ecto-sp13_S_contig15172:692..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig15172 693..1008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig15172.3901.1prot_Ecto-sp13_S_contig15172.3901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig15172 100..1008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig15172.3901.1

>prot_Ecto-sp13_S_contig15172.3901.1 ID=prot_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MKMGTRRAVRRPRPGSPGPMARRRHRAGPVRFVSSTAWFVGALVLLLRRS
AWEGGVAAQQDNDDGSTSAPAALYPDCEADMALVGDSLCDLGFNVAECGF
DGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSP
TTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE
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mRNA from alignment at Ecto-sp13_S_contig15172:100..1008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig15172.3901.1 ID=mRNA_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15172:100..1008- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATGGGCACCCGTCGCGCGGTACGAAGGCCGCGGCCAGGCTCCCC CGGACCAATGGCGCGACGCCGTCACCGAGCCGGGCCGGTTCGATTTGTGT CTTCTACAGCGTGGTTCGTGGGAGCTCTCGTTCTTCTTCTCCGACGCAGC GCATGGGAGGGTGGCGTCGCCGCGCAACAAGATAATGACGACGGTAGCAC CAGCGCGCCTGCCGCGCTCTACCCCGACTGCGAGGCTGACATGGCCTTGG TCGGCGATTCCCTCTGCGACCTCGGCTTCAACGTCGCAGAGTGCGGTTTC GACGGCGGAGACTGCTGTGAGTGCCCCCCCCGAGACCTCAATGACTGCCC CAAACAGGCGCGATTTTTACCTGTACTGTACCGTGTTGGCGTACGTATGC TCCTCCTGTTATGGAGGGCGGCTGCATTCAGCCTCGCTCATGGTCGTCAG TTCAGAACCAGCGGTGTTTTGTGTACCGCAGTCGATTTCTGCTCGCGGGG GCTCCTGCCACCCTCGACCTTCGTTGTCCCGGTGGAGAACCAACCGCCGT CTTGTGGAACAGCGGTCGTTTTTATGTGCTCACCCATGGCCACAAAACGG GCGACCTGCCGCTCGACCTTACCTCTATTCGCTCACACACGCGCGCGCGC GGACTTGCTGCTGCACCCAGGCGAGTGTACCTGCGTCGACACGGGGGATC AGGTCTGCGGCGAGGGGGGAGGAGGGTATTTCTGCGTAGACCCGGACGCC CCCCAAGACTGTGCGTCTGCGCCGAGCCCGACGCCTAACACGCCGTCGTC GCCGACGACGTCTTCCGACGCGGTAGGCGTAACGGCTGGACCGACGTCGC TCGATGCGTCTGATGACCCTTACCCGGGCTGTGGCGGTTACATCCCACAT ATTGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15172:100..1008-

>mRNA_Ecto-sp13_S_contig15172.3901.1 ID=mRNA_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15172:100..1008- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATGGGCACCCGTCGCGCGGTACGAAGGCCGCGGCCAGGCTCCCC
CGGACCAATGGCGCGACGCCGTCACCGAGCCGGGCCGGTTCGATTTGTGT
CTTCTACAGCGTGGTTCGTGGGAGCTCTCGTTCTTCTTCTCCGACGCAGC
GCATGGGAGGGTGGCGTCGCCGCGCAACAAGATAATGACGACGGTAGCAC
CAGCGCGCCTGCCGCGCTCTACCCCGACTGCGAGGCTGACATGGCCTTGG
TCGGCGATTCCCTCTGCGACCTCGGCTTCAACGTCGCAGAGTGCGGTTTC
GACGGCGGAGACTGCTGCGAGTGTACCTGCGTCGACACGGGGGATCAGGT
CTGCGGCGAGGGGGGAGGAGGGTATTTCTGCGTAGACCCGGACGCCCCCC
AAGACTGTGCGTCTGCGCCGAGCCCGACGCCTAACACGCCGTCGTCGCCG
ACGACGTCTTCCGACGCGGTAGGCGTAACGGCTGGACCGACGTCGCTCGA
TGCGTCTGATGACCCTTACCCGGGCTGTGGCGGTTACATCCCACATATTG
GTGAG
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