mRNA_Ecto-sp13_S_contig15172.3901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI) HSP 1 Score: 301 bits (770), Expect = 1.510e-99 Identity = 151/170 (88.82%), Postives = 157/170 (92.35%), Query Frame = 1
Query: 58 MARRRHRAGPVRFVSSTAWFVGALVLLLRRSAWEGGVAAQQDNDDG----STSAPAALYPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
MARRR RAGPVRFV+S AWFVGALVLLLRRSAWEGGVAAQ+D+DDG STSAP ALYPDCEADMALVGDSLCD NVAECGFDGGDCCECTCVDTGDQVCGEGG GYFCVDPDAPQDCAS+PSPTPNTPSSPT SSDA+ VTAGPTSLDASDDPYPGCGGYIPHIG+
Sbjct: 1 MARRRRRAGPVRFVASRAWFVGALVLLLRRSAWEGGVAAQEDSDDGNDGGSTSAPTALYPDCEADMALVGDSLCDFDVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPT-SSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGD 169
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE) HSP 1 Score: 301 bits (770), Expect = 3.050e-97 Identity = 151/172 (87.79%), Postives = 156/172 (90.70%), Query Frame = 1
Query: 58 MARRRHRAGPVRFVSSTAWFVGALVLLLRRSAWEGGVAAQQD------NDDGSTSAPAALYPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
MARRRHRAGPVRFV+S AW VGALVLLLRRSAWE GV AQQ NDDG TSAPAALYPDCEAD ALVGDS+CDL FNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPS+PT SSDA+ VTAGPTSLDASDDPYPGCGGYIPHIG+
Sbjct: 1 MARRRHRAGPVRFVASRAWCVGALVLLLRRSAWESGVVAQQGSDDGNGNDDGGTSAPAALYPDCEADTALVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSAPT-SSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGD 171
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 5.670e-13 Identity = 55/129 (42.64%), Postives = 64/129 (49.61%), Query Frame = 1
Query: 184 NDDGSTSAPAAL--YPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDT---GDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
+D G T +PAA YPDCE + D +CD N A CG+DGGDCC CTC D G CG G Y C+DPDAP C S SPTP SP +D +P C GYI IG+
Sbjct: 128 DDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWGYSTCGYYG--YDCMDPDAPSAC-STDSPTP----SPAAGTD-----------------WPECEGYIYMIGD 232
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 5.680e-13 Identity = 55/130 (42.31%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 184 NDDGSTSAPAAL--YPDCEADMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGD----QVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSSPTTSSDAVGVTAGPTSLDASDDPYPGCGGYIPHIGE 555
+D G T +PAA YPDCE + D +CD N AECG+DGGDCC CTC D CG G Y C+DPDAP C S SPTP SP +D +P C GYI IG+
Sbjct: 128 DDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYG--YDCMDPDAPSSC-STDSPTP----SPAAGTD-----------------WPECEGYIYMIGD 233
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 2.740e-12 Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 238 DMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDA 396
D + VGD CD N AECG+DGGDCCECTCV G+ CG GG Y C+DP A
Sbjct: 43 DESAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGG--YACIDPAA 93
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.760e-10 Identity = 37/76 (48.68%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 217 LYPDCEADMALVGDSLCDLGFN-VAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVD---PDAPQDCASAPSPTP 432
LYPDCE ++ L+GD CD N + ECGFDGGDCCEC CV D E Y CV D C P+PTP
Sbjct: 4 LYPDCEGELDLIGDGYCDDATNNLEECGFDGGDCCECDCVIPADAS--EDQLAYSCVQFSCDDTSSACYVVPAPTP 77
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5JX54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX54_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 4.320e-10 Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 217 LYPDCEA---DMALVGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCAS-APSPTP 432
LYPDC + + +G+ C G N ECG+DGGDCCEC C T + CG G Y C DP +P +C P+P+P
Sbjct: 209 LYPDCVSRGGTLEWIGNGACYWGNNFEECGYDGGDCCECDCESTLESHCGVNG--YDCADPSSPSECTEDVPTPSP 282
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9 Identity = 51/116 (43.97%), Postives = 56/116 (48.28%), Query Frame = 1
Query: 100 SSTAWFVGALVLLLRRSAWEGGVAAQQDNDDGSTSAPAA-LYPDCEADMALVGDSLCDLGFN-VAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVD---PDAPQDCASAPSPTP 432
S W V ALV L SA G VA STS LYPDCE ++ +GD CD N + ECGFDGGDCCEC CV D E Y CV D C P+PTP
Sbjct: 8 SRARWAVVALVAL---SAGCGRVATAT-----STSVDLIDLYPDCEGELDHIGDGYCDDATNNLEECGFDGGDCCECDCVVPADAS--EDQLAYSCVQFSCDDTSSACYVVPAPTP 113
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 3.170e-9 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 250 VGDSLCDLGFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDA 396
+G+ C++G N+ ECGFDGGDCCECTC D G+ CG+ G Y C+DPDA
Sbjct: 98 IGNGRCNMGNNIEECGFDGGDCCECTCED-GEYTCGQYYG-YACIDPDA 144
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 4.820e-9 Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 244 ALVGDSLCDLGFNVAECGFDGGDCCECTCVDT--GDQ--VCGEGGGGYFCVDPDAP 399
AL GD C N AECG+DGGDCCECTC + GD +C + G G+ CVDPDAP
Sbjct: 34 ALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAP 89 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig15172.3901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig15172.3901.1 >prot_Ecto-sp13_S_contig15172.3901.1 ID=prot_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp MKMGTRRAVRRPRPGSPGPMARRRHRAGPVRFVSSTAWFVGALVLLLRRSback to top mRNA from alignment at Ecto-sp13_S_contig15172:100..1008- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig15172.3901.1 ID=mRNA_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15172:100..1008- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig15172:100..1008- >mRNA_Ecto-sp13_S_contig15172.3901.1 ID=mRNA_Ecto-sp13_S_contig15172.3901.1|Name=mRNA_Ecto-sp13_S_contig15172.3901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig15172:100..1008- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |