mRNA_Ecto-sp13_S_contig14515.3471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.380e-25 Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query: 19 MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV
Sbjct: 1 MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 52
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: UPI000A2A80C7 (DNA topoisomerase 2-alpha-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A80C7) HSP 1 Score: 88.6 bits (218), Expect = 1.790e-21 Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GS E Q MWVYD++ D+IV + +T+VPGLYKIFDEI+VNAADNKQRD NMS +K+
Sbjct: 49 IGSVEPNKQSMWVYDDILDAIVSKEITYVPGLYKIFDEILVNAADNKQRDANMSTIKI 106
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: UPI001EAFF0EE (DNA topoisomerase 2-alpha-like isoform X1 n=5 Tax=Haliotis TaxID=6452 RepID=UPI001EAFF0EE) HSP 1 Score: 90.1 bits (222), Expect = 1.140e-19 Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
VGS E ++Q MWVYDEV D++V+R +TFVPGLYKIFDEI+VNAADNKQRD +M+ LK+
Sbjct: 89 VGSVEAVTQAMWVYDEVTDTMVQREITFVPGLYKIFDEIMVNAADNKQRDPSMNCLKI 146
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A1E7F6K6_9STRA (DNA topoisomerase 2 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6K6_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.950e-19 Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GS E M+++M++YDEV D+I+ + +T+ PGLYKIFDEIIVNAADNKQRDENM +L V
Sbjct: 24 IGSVEPMTEQMFIYDEVEDAIINKTITYTPGLYKIFDEIIVNAADNKQRDENMDRLDV 81
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6P8H7T6_ACTTE (DNA topoisomerase 2 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H7T6_ACTTE) HSP 1 Score: 88.6 bits (218), Expect = 3.960e-19 Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
VGS E + Q MWVYD+V ++IV + +T+VPGLYKIFDEI+VNAADNKQRD NMS +K+
Sbjct: 53 VGSVEPLKQTMWVYDDVLEAIVSKEITYVPGLYKIFDEILVNAADNKQRDPNMSVIKI 110
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A210Q0Z0_MIZYE (DNA topoisomerase 2 n=4 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q0Z0_MIZYE) HSP 1 Score: 88.6 bits (218), Expect = 3.960e-19 Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GSTE ++Q MWVYD++ + +V+R +TFVPGLYKIFDEI+VNA+DNKQRD NM+ +K+
Sbjct: 72 IGSTEPVTQSMWVYDDIQEKMVQREITFVPGLYKIFDEILVNASDNKQRDPNMNCIKI 129
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6J1W185_9SAUR (DNA topoisomerase 2-alpha-like n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1W185_9SAUR) HSP 1 Score: 83.2 bits (204), Expect = 6.870e-19 Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GS E+++Q+MWV+DE + + R VTFVPGLYKIFDEI+VNAADNKQRDENMS +KV
Sbjct: 43 IGSVEQVTQQMWVFDE-DEGLNCREVTFVPGLYKIFDEILVNAADNKQRDENMSCIKV 99
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A7S3XY11_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY11_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 7.220e-19 Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
VGS EK++Q MWVYD + IV + +T+VPGL+KIFDEIIVNAADNKQRD M +++V
Sbjct: 55 VGSVEKVTQPMWVYDPEQNKIVNKTITYVPGLFKIFDEIIVNAADNKQRDHRMDRIEV 112
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: V3ZIN5_LOTGI (DNA topoisomerase 2 (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZIN5_LOTGI) HSP 1 Score: 87.0 bits (214), Expect = 1.370e-18 Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GS EK++Q MWVYDE + ++ + VTFVPGLYKIFDEI+VNAADNKQRDE M+ +K+
Sbjct: 41 IGSVEKLTQPMWVYDEEKELMITKDVTFVPGLYKIFDEILVNAADNKQRDEKMNTIKI 98
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A0U1M5I0_TALIS (DNA topoisomerase 2 n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A0U1M5I0_TALIS) HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18 Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
+GS EK +Q+MWVYD +DS+ R VT+VPGLYKIFDEI+VNAADNKQ D+NM ++K+
Sbjct: 144 IGSIEKTTQQMWVYDSASDSMDFREVTYVPGLYKIFDEIVVNAADNKQNDKNMDEMKI 201 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14515.3471.1 >prot_Ecto-sp13_S_contig14515.3471.1 ID=prot_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLback to top mRNA from alignment at Ecto-sp13_S_contig14515:1881..2054- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14515.3471.1 ID=mRNA_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14515:1881..2054- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14515:1881..2054- >mRNA_Ecto-sp13_S_contig14515.3471.1 ID=mRNA_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14515:1881..2054- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |