mRNA_Ecto-sp13_S_contig14515.3471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14515.3471.1
Unique NamemRNA_Ecto-sp13_S_contig14515.3471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6H5KFS2_9PHAE (DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFS2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.380e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1
Query:   19 MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV
Sbjct:    1 MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 52          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: UPI000A2A80C7 (DNA topoisomerase 2-alpha-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A80C7)

HSP 1 Score: 88.6 bits (218), Expect = 1.790e-21
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GS E   Q MWVYD++ D+IV + +T+VPGLYKIFDEI+VNAADNKQRD NMS +K+
Sbjct:   49 IGSVEPNKQSMWVYDDILDAIVSKEITYVPGLYKIFDEILVNAADNKQRDANMSTIKI 106          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: UPI001EAFF0EE (DNA topoisomerase 2-alpha-like isoform X1 n=5 Tax=Haliotis TaxID=6452 RepID=UPI001EAFF0EE)

HSP 1 Score: 90.1 bits (222), Expect = 1.140e-19
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            VGS E ++Q MWVYDEV D++V+R +TFVPGLYKIFDEI+VNAADNKQRD +M+ LK+
Sbjct:   89 VGSVEAVTQAMWVYDEVTDTMVQREITFVPGLYKIFDEIMVNAADNKQRDPSMNCLKI 146          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A1E7F6K6_9STRA (DNA topoisomerase 2 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F6K6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.950e-19
Identity = 38/58 (65.52%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GS E M+++M++YDEV D+I+ + +T+ PGLYKIFDEIIVNAADNKQRDENM +L V
Sbjct:   24 IGSVEPMTEQMFIYDEVEDAIINKTITYTPGLYKIFDEIIVNAADNKQRDENMDRLDV 81          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6P8H7T6_ACTTE (DNA topoisomerase 2 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H7T6_ACTTE)

HSP 1 Score: 88.6 bits (218), Expect = 3.960e-19
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            VGS E + Q MWVYD+V ++IV + +T+VPGLYKIFDEI+VNAADNKQRD NMS +K+
Sbjct:   53 VGSVEPLKQTMWVYDDVLEAIVSKEITYVPGLYKIFDEILVNAADNKQRDPNMSVIKI 110          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A210Q0Z0_MIZYE (DNA topoisomerase 2 n=4 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q0Z0_MIZYE)

HSP 1 Score: 88.6 bits (218), Expect = 3.960e-19
Identity = 37/58 (63.79%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GSTE ++Q MWVYD++ + +V+R +TFVPGLYKIFDEI+VNA+DNKQRD NM+ +K+
Sbjct:   72 IGSTEPVTQSMWVYDDIQEKMVQREITFVPGLYKIFDEILVNASDNKQRDPNMNCIKI 129          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A6J1W185_9SAUR (DNA topoisomerase 2-alpha-like n=1 Tax=Notechis scutatus TaxID=8663 RepID=A0A6J1W185_9SAUR)

HSP 1 Score: 83.2 bits (204), Expect = 6.870e-19
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GS E+++Q+MWV+DE  + +  R VTFVPGLYKIFDEI+VNAADNKQRDENMS +KV
Sbjct:   43 IGSVEQVTQQMWVFDE-DEGLNCREVTFVPGLYKIFDEILVNAADNKQRDENMSCIKV 99          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A7S3XY11_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY11_HETAK)

HSP 1 Score: 83.2 bits (204), Expect = 7.220e-19
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            VGS EK++Q MWVYD   + IV + +T+VPGL+KIFDEIIVNAADNKQRD  M +++V
Sbjct:   55 VGSVEKVTQPMWVYDPEQNKIVNKTITYVPGLFKIFDEIIVNAADNKQRDHRMDRIEV 112          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: V3ZIN5_LOTGI (DNA topoisomerase 2 (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZIN5_LOTGI)

HSP 1 Score: 87.0 bits (214), Expect = 1.370e-18
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GS EK++Q MWVYDE  + ++ + VTFVPGLYKIFDEI+VNAADNKQRDE M+ +K+
Sbjct:   41 IGSVEKLTQPMWVYDEEKELMITKDVTFVPGLYKIFDEILVNAADNKQRDEKMNTIKI 98          
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Match: A0A0U1M5I0_TALIS (DNA topoisomerase 2 n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A0U1M5I0_TALIS)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 VGSTEKMSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKLKV 174
            +GS EK +Q+MWVYD  +DS+  R VT+VPGLYKIFDEI+VNAADNKQ D+NM ++K+
Sbjct:  144 IGSIEKTTQQMWVYDSASDSMDFREVTYVPGLYKIFDEIVVNAADNKQNDKNMDEMKI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14515.3471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFS2_9PHAE2.380e-25100.00DNA topoisomerase 2 n=2 Tax=Ectocarpus TaxID=2879 ... [more]
UPI000A2A80C71.790e-2165.52DNA topoisomerase 2-alpha-like n=1 Tax=Exaiptasia ... [more]
UPI001EAFF0EE1.140e-1970.69DNA topoisomerase 2-alpha-like isoform X1 n=5 Tax=... [more]
A0A1E7F6K6_9STRA3.950e-1965.52DNA topoisomerase 2 (Fragment) n=1 Tax=Fragilariop... [more]
A0A6P8H7T6_ACTTE3.960e-1967.24DNA topoisomerase 2 n=2 Tax=Actinia tenebrosa TaxI... [more]
A0A210Q0Z0_MIZYE3.960e-1963.79DNA topoisomerase 2 n=4 Tax=Mizuhopecten yessoensi... [more]
A0A6J1W185_9SAUR6.870e-1968.97DNA topoisomerase 2-alpha-like n=1 Tax=Notechis sc... [more]
A0A7S3XY11_HETAK7.220e-1963.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
V3ZIN5_LOTGI1.370e-1865.52DNA topoisomerase 2 (Fragment) n=1 Tax=Lottia giga... [more]
A0A0U1M5I0_TALIS1.380e-1865.52DNA topoisomerase 2 n=2 Tax=Talaromyces sect. Isla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14515contigEcto-sp13_S_contig14515:1881..2054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score105.5
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D7G0Y6
Preferred nameTOP2
Model size174
KEGG koko:K03164
KEGG Pathwayko01524,map01524
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.DNA topoisomerase type II (ATP-hydrolyzing) activity
EggNOG OGsCOG0187@1,KOG0355@2759
EC5.99.1.3
Cds size156
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.8533053-CDS-Ecto-sp13_S_contig14515:1880..20361681462774.8533053-CDS-Ecto-sp13_S_contig14515:1880..2036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14515 1881..2036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.8705492-UTR-Ecto-sp13_S_contig14515:2036..20541681462774.8705492-UTR-Ecto-sp13_S_contig14515:2036..2054Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14515 2037..2054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14515.3471.1prot_Ecto-sp13_S_contig14515.3471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14515 1881..2036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14515.3471.1

>prot_Ecto-sp13_S_contig14515.3471.1 ID=prot_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MSQEMWVYDEVADSIVKRAVTFVPGLYKIFDEIIVNAADNKQRDENMSKL
KV
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mRNA from alignment at Ecto-sp13_S_contig14515:1881..2054-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14515.3471.1 ID=mRNA_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14515:1881..2054- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGTCAACGGAGAAGATGTCGCAGGAGATGTGGGTCTACGACGAGGT GGCGGACAGCATCGTCAAGCGCGCGGTCACGTTCGTGCCCGGGCTGTACA AGATCTTCGACGAGATCATCGTCAACGCCGCCGATAACAAGCAGCGCGAC GAGAACATGTCCAAGCTCAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14515:1881..2054-

>mRNA_Ecto-sp13_S_contig14515.3471.1 ID=mRNA_Ecto-sp13_S_contig14515.3471.1|Name=mRNA_Ecto-sp13_S_contig14515.3471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14515:1881..2054- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGGAGATGTGGGTCTACGACGAGGTGGCGGACAGCATCGTCAA
GCGCGCGGTCACGTTCGTGCCCGGGCTGTACAAGATCTTCGACGAGATCA
TCGTCAACGCCGCCGATAACAAGCAGCGCGACGAGAACATGTCCAAGCTC
AAGGTG
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