prot_Ecto-sp13_S_contig1313.2548.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1313.2548.1
Unique Nameprot_Ecto-sp13_S_contig1313.2548.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length426
Homology
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 3.900e-179
Identity = 334/341 (97.95%), Postives = 335/341 (98.24%), Query Frame = 0
Query:   88 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLEGRIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RQXXXXXXXXXXXGYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 426
            MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDL GRIDD XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RQ XXXXXXXXXX YSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMV+RRRFQGHG
Sbjct:    1 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLGGRIDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRQGXXXXXXXXXXXYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHG 341          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 1.650e-90
Identity = 170/230 (73.91%), Postives = 174/230 (75.65%), Query Frame = 0
Query:  241 ISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRG------IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEE--------------------------------------IKQASDEAMVERRRFQGHG 426
            +++K L   E        LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRG      IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKS+RPPQRFFNPEE                                      IKQASDEAMVERRRFQGHG
Sbjct:    8 LAEKKLQKNELLWHTTVQLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGVRGVCLIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSIRPPQRFFNPEESTTLLPLKMSLLFECDDTKPNQNDIRNEFRTDALRDDQIKQASDEAMVERRRFQGHG 237          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6H5JKS5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 7.120e-46
Identity = 166/173 (95.95%), Postives = 167/173 (96.53%), Query Frame = 0
Query:    1 MSDDDGLRDSDSGDEPQGQDVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLEGRIDD 171
            MSDDDGLRDSDS DEPQGQ+VE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDL GRIDD
Sbjct:    1 MSDDDGLRDSDSEDEPQGQNVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLGGRIDD 173          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S3QHY2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHY2_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.970e-41
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 424
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  158 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 347          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S3QHX5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHX5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.110e-39
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 424
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  158 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 347          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6S8Z740_9STRA (Transcription elongation factor SPT5 n=9 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8Z740_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.450e-38
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 424
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  171 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 360          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: B7G376_PHATC (Transcription elongation factor SPT5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G376_PHATC)

HSP 1 Score: 158 bits (400), Expect = 1.920e-38
Identity = 89/194 (45.88%), Postives = 126/194 (64.95%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSAD-AETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 424
            VAQQ+L+P +SD S+++V C  GKE  L   +MNK +A    G+P G++SA+  A +KG +YLE+ +EPAV  AI G+RG+    +R VPI DMT V++V S  R KPV++N+++R+ R  Y  DLA V +V   G + VVQ +PR+DL       AE R  RK++RPPQ+FFNP+EI       +  R+RF G
Sbjct:  197 VAQQSLVPSVSDPSMWMVSCANGKEHELVCQIMNKCVAMARQGRPVGISSAIA-AQSKGKIYLESFSEPAVVDAIQGVRGLLQYTMRLVPIGDMTTVMTVTS--RKKPVQKNEWVRMTRGHYKHDLALVKDVKESGLKCVVQCVPRLDLTLADLPPAEARMRRKTVRPPQKFFNPQEIAALGRHGLT-RQRFPG 386          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7R9ZDV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDV4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.670e-38
Identity = 85/196 (43.37%), Postives = 126/196 (64.29%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 426
            VAQQ+L+P +SD S+++  C  GKE  L   +MNK++AF   G+P G+T AV  A +KG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++R+ R  Y  DLA V  V  GG + ++Q +PRIDL +S     E R  R+++RPPQ+FFNP+EI      ++  R+RF G G
Sbjct:  166 VAQQSLVPSVSDPSMWMFSCAPGKEQELVYQIMNKSIAFARQGKPLGITGAVA-AQSKGRIYVESYSEPAVIEAVEGIRNMMQYSMRLVPISDMTTVMTV--VPKKKPVKKNDWVRMSRSHYKGDLALVKAVRDGGLKCIIQCVPRIDLTLSDLPPEEARVRRRTVRPPQKFFNPQEIAALGKHSL--RQRFPGLG 356          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S2UHW9_9STRA (Transcription elongation factor SPT5 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.120e-37
Identity = 88/196 (44.90%), Postives = 125/196 (63.78%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAE-TRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 426
            V+QQ+L+P +SD SL++  C+TGKE  L   +MNK +A+ A G+P G+TSAV  A TKG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++RL R  Y  DL  V  V   G + VVQ +PR+DL      AE  R  R+++RPPQ+FFN +EI      A+  R+RF G G
Sbjct:   81 VSQQSLVPSVSDPSLWMFSCQTGKEDELVYQIMNKCIAYAAQGKPLGITSAVA-AQTKGKIYVESYSEPAVIEAMQGIRNLMQYSMRLVPINDMTTVMTV--VPKKKPVKKNDWVRLTRGHYKGDLGLVKSVRDSGLKCVVQCLPRLDLTLSDLPAEDARIRRRTVRPPQKFFNAQEIAALGKHAL--RQRFPGMG 271          
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A1E7FT68_9STRA (Transcription elongation factor SPT5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FT68_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.930e-37
Identity = 80/194 (41.24%), Postives = 126/194 (64.95%), Query Frame = 0
Query:  232 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADA-ETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 424
            V+QQ+L+P +SD SL+++ C TGKE  + + +MNK +A+   G+P G+  A+  A +KG +Y+E+ +EPAV  AI G+RG+    +R +PI DMT V++V    + KPV++N+++R+ R  Y  DLA V+ V   G + +VQ +PR+DL +LS    E R  RK++RPPQ+FF+ +E+          R+RF G
Sbjct:  202 VSQQSLVPSVSDPSLWMISCMTGKEQEMVMQIMNKCVAYARQGRPLGICGAIA-AQSKGRIYIESYSEPAVVEAITGVRGMLQYTMRLIPIGDMTTVMTV--VPKKKPVKKNEWVRMTRGHYKGDLALVIAVRESGLKCIVQCVPRLDLAALSLPPDEARIRRKTVRPPQKFFSEQELAALGYADRRHRQRFPG 392          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI29_ECTSI3.900e-17997.95Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JFI1_9PHAE1.650e-9073.91Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JKS5_9PHAE7.120e-4695.95Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3QHY2_9STRA6.970e-4144.85Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S3QHX5_9STRA1.110e-3944.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6S8Z740_9STRA1.450e-3844.85Transcription elongation factor SPT5 n=9 Tax=Chaet... [more]
B7G376_PHATC1.920e-3845.88Transcription elongation factor SPT5 n=2 Tax=Phaeo... [more]
A0A7R9ZDV4_9STRA2.670e-3843.37Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2UHW9_9STRA1.120e-3744.90Transcription elongation factor SPT5 n=1 Tax=Atthe... [more]
A0A1E7FT68_9STRA3.930e-3741.24Transcription elongation factor SPT5 n=1 Tax=Fragi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..50
NoneNo IPR availablePANTHERPTHR11125:SF7TRANSCRIPTION ELONGATION FACTOR SPT5coord: 229..418
IPR005100NGN domainPFAMPF03439Spt5-NGNcoord: 245..329
e-value: 2.0E-16
score: 59.6
IPR036735NusG, N-terminal domain superfamilyGENE3D3.30.70.940coord: 240..339
e-value: 2.0E-23
score: 84.1
IPR039659Transcription elongation factor SPT5PANTHERPTHR11125SUPPRESSOR OF TY 5coord: 229..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1313contigEcto-sp13_S_contig1313:10570..17864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1313.2548.1mRNA_Ecto-sp13_S_contig1313.2548.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1313 10212..17864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1313.2548.1 ID=prot_Ecto-sp13_S_contig1313.2548.1|Name=mRNA_Ecto-sp13_S_contig1313.2548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
MSDDDGLRDSDSGDEPQGQDVEEEEEEEEEEEEEEEEEEEEEEAEPSSEE
DSDDGGGRSRRASSSSRGKKRAREVAPAAKKKSRRGDMSRFYDEMAEVDD
DAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQT
MRRLGVRLPESRNDLEGRIDDDDDEDDDDDFRMGPGDGGGGGGGGGGGGA
GRQGAGGGGGGGRGGYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVE
CKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEP
AVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKR
KPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQ
RFFNPEEIKQASDEAMVERRRFQGHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005100NGN-domain
IPR036735NGN_dom_sf
IPR039659SPT5