mRNA_Ecto-sp13_S_contig1313.2548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1313.2548.1
Unique NamemRNA_Ecto-sp13_S_contig1313.2548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 3.150e-177
Identity = 334/341 (97.95%), Postives = 335/341 (98.24%), Query Frame = 2 
Query:  620 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLEGRIDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RQXXXXXXXXXXXGYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 1636
            MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDL GRIDD XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RQ XXXXXXXXXX YSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMV+RRRFQGHG
Sbjct:    1 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLGGRIDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRQGXXXXXXXXXXXYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVDRRRFQGHG 341
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 6.450e-89
Identity = 170/230 (73.91%), Postives = 174/230 (75.65%), Query Frame = 2 
Query: 1079 ISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRG------IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQRFFNPEE--------------------------------------IKQASDEAMVERRRFQGHG 1636
            +++K L   E        LCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRG      IYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKS+RPPQRFFNPEE                                      IKQASDEAMVERRRFQGHG
Sbjct:    8 LAEKKLQKNELLWHTTVQLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGVRGVCLIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSIRPPQRFFNPEESTTLLPLKMSLLFECDDTKPNQNDIRNEFRTDALRDDQIKQASDEAMVERRRFQGHG 237
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6H5JKS5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.000e-45
Identity = 167/173 (96.53%), Postives = 168/173 (97.11%), Query Frame = 2 
Query:  359 MSDDDGLRDSDSGDEPQGQDVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLEGRIDD 871
            MSDDDGLRDSDS DEPQGQ+VEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDL GRIDD
Sbjct:    1 MSDDDGLRDSDSEDEPQGQNVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLPESRNDLGGRIDD 173
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S3QHY2_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHY2_9STRA)

HSP 1 Score: 159 bits (401), Expect = 6.430e-40
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 1630
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  158 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 347
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S3QHX5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QHX5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.030e-38
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 1630
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  158 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 347
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A6S8Z740_9STRA (Transcription elongation factor SPT5 n=9 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8Z740_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.510e-37
Identity = 87/194 (44.85%), Postives = 131/194 (67.53%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 1630
            V QQ+LLP +SD +L++  C TGKE SL + +MNK ++F   G+P G+TSAV  A +KG +Y+E+ +EPAV+ AI G+RG+    +R VPI DMT V++V+S  + KPV++++++R+ R  +  DLA V  V   G + V+Q +PRIDL +S     E R  R++++PPQ+FFN +EI  A  +  V R+RF G
Sbjct:  171 VTQQSLLPSVSDPTLWMFNCPTGKEASLVIQIMNKCVSFARQGKPLGITSAVA-AQSKGRVYVESYSEPAVREAITGIRGLMAYSMRLVPIRDMTTVMTVKS--KKKPVKKSEWVRMSRGQFKGDLALVKMVRESGTKCVIQCVPRIDLTLSELTPEEARIRRRTVKPPQKFFNAQEIA-ALGKLSVTRQRFPG 360
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: B7G376_PHATC (Transcription elongation factor SPT5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G376_PHATC)

HSP 1 Score: 158 bits (400), Expect = 1.970e-37
Identity = 89/194 (45.88%), Postives = 126/194 (64.95%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSAD-AETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 1630
            VAQQ+L+P +SD S+++V C  GKE  L   +MNK +A    G+P G++SA+  A +KG +YLE+ +EPAV  AI G+RG+    +R VPI DMT V++V S  R KPV++N+++R+ R  Y  DLA V +V   G + VVQ +PR+DL       AE R  RK++RPPQ+FFNP+EI       +  R+RF G
Sbjct:  197 VAQQSLVPSVSDPSMWMVSCANGKEHELVCQIMNKCVAMARQGRPVGISSAIA-AQSKGKIYLESFSEPAVVDAIQGVRGLLQYTMRLVPIGDMTTVMTVTS--RKKPVQKNEWVRMTRGHYKHDLALVKDVKESGLKCVVQCVPRLDLTLADLPPAEARMRRKTVRPPQKFFNPQEIAALGRHGLT-RQRFPG 386
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7R9ZDV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDV4_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.360e-37
Identity = 85/196 (43.37%), Postives = 126/196 (64.29%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDL-VSLSADAETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 1636
            VAQQ+L+P +SD S+++  C  GKE  L   +MNK++AF   G+P G+T AV  A +KG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++R+ R  Y  DLA V  V  GG + ++Q +PRIDL +S     E R  R+++RPPQ+FFNP+EI      ++  R+RF G G
Sbjct:  166 VAQQSLVPSVSDPSMWMFSCAPGKEQELVYQIMNKSIAFARQGKPLGITGAVA-AQSKGRIYVESYSEPAVIEAVEGIRNMMQYSMRLVPISDMTTVMTV--VPKKKPVKKNDWVRMSRSHYKGDLALVKAVRDGGLKCIIQCVPRIDLTLSDLPPEEARVRRRTVRPPQKFFNPQEIAALGKHSL--RQRFPGLG 356
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A7S2UHW9_9STRA (Transcription elongation factor SPT5 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW9_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.090e-36
Identity = 88/196 (44.90%), Postives = 125/196 (63.78%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAE-TRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQGHG 1636
            V+QQ+L+P +SD SL++  C+TGKE  L   +MNK +A+ A G+P G+TSAV  A TKG +Y+E+ +EPAV  A+ G+R +    +R VPI DMT V++V    + KPV++N ++RL R  Y  DL  V  V   G + VVQ +PR+DL      AE  R  R+++RPPQ+FFN +EI      A+  R+RF G G
Sbjct:   81 VSQQSLVPSVSDPSLWMFSCQTGKEDELVYQIMNKCIAYAAQGKPLGITSAVA-AQTKGKIYVESYSEPAVIEAMQGIRNLMQYSMRLVPINDMTTVMTV--VPKKKPVKKNDWVRLTRGHYKGDLGLVKSVRDSGLKCVVQCLPRLDLTLSDLPAEDARIRRRTVRPPQKFFNAQEIAALGKHAL--RQRFPGMG 271
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BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Match: A0A1E7FT68_9STRA (Transcription elongation factor SPT5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FT68_9STRA)

HSP 1 Score: 154 bits (390), Expect = 3.790e-36
Identity = 80/194 (41.24%), Postives = 126/194 (64.95%), Query Frame = 2 
Query: 1052 VAQQALLPGISDKSLFVVECKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEPAVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKRKPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADA-ETRNARKSLRPPQRFFNPEEIKQASDEAMVERRRFQG 1630
            V+QQ+L+P +SD SL+++ C TGKE  + + +MNK +A+   G+P G+  A+  A +KG +Y+E+ +EPAV  AI G+RG+    +R +PI DMT V++V    + KPV++N+++R+ R  Y  DLA V+ V   G + +VQ +PR+DL +LS    E R  RK++RPPQ+FF+ +E+          R+RF G
Sbjct:  202 VSQQSLVPSVSDPSLWMISCMTGKEQEMVMQIMNKCVAYARQGRPLGICGAIA-AQSKGRIYIESYSEPAVVEAITGVRGMLQYTMRLIPIGDMTTVMTV--VPKKKPVKKNEWVRMTRGHYKGDLALVIAVRESGLKCIVQCVPRLDLAALSLPPDEARIRRKTVRPPQKFFSEQELAALGYADRRHRQRFPG 392
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1313.2548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI29_ECTSI3.150e-17797.95Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JFI1_9PHAE6.450e-8973.91Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JKS5_9PHAE1.000e-4596.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3QHY2_9STRA6.430e-4044.85Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S3QHX5_9STRA1.030e-3844.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6S8Z740_9STRA1.510e-3744.85Transcription elongation factor SPT5 n=9 Tax=Chaet... [more]
B7G376_PHATC1.970e-3745.88Transcription elongation factor SPT5 n=2 Tax=Phaeo... [more]
A0A7R9ZDV4_9STRA2.360e-3743.37Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2UHW9_9STRA1.090e-3644.90Transcription elongation factor SPT5 n=1 Tax=Atthe... [more]
A0A1E7FT68_9STRA3.790e-3641.24Transcription elongation factor SPT5 n=1 Tax=Fragi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1313contigEcto-sp13_S_contig1313:10212..17864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score541.2
Seed ortholog evalue4.4e-151
Seed eggNOG ortholog2880.D7FI29
Model size1636
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
Ec32 ortholog descriptionEarly transcription elongation factor of RNA pol II, NGN section
Ec32 orthologEc-10_003290.1
Cds size1278
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1313.2548.1prot_Ecto-sp13_S_contig1313.2548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1313 10570..17864 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.1634147-UTR-Ecto-sp13_S_contig1313:10211..105691681462703.1634147-UTR-Ecto-sp13_S_contig1313:10211..10569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1313 10212..10569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.178797-CDS-Ecto-sp13_S_contig1313:10569..108381681462703.178797-CDS-Ecto-sp13_S_contig1313:10569..10838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 10570..10838 +
1681462703.1886272-CDS-Ecto-sp13_S_contig1313:11951..120471681462703.1886272-CDS-Ecto-sp13_S_contig1313:11951..12047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 11952..12047 +
1681462703.1967807-CDS-Ecto-sp13_S_contig1313:13653..139811681462703.1967807-CDS-Ecto-sp13_S_contig1313:13653..13981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 13654..13981 +
1681462703.20537-CDS-Ecto-sp13_S_contig1313:14465..145461681462703.20537-CDS-Ecto-sp13_S_contig1313:14465..14546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 14466..14546 +
1681462703.2140062-CDS-Ecto-sp13_S_contig1313:15179..153381681462703.2140062-CDS-Ecto-sp13_S_contig1313:15179..15338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 15180..15338 +
1681462703.224171-CDS-Ecto-sp13_S_contig1313:15983..161361681462703.224171-CDS-Ecto-sp13_S_contig1313:15983..16136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 15984..16136 +
1681462703.2340395-CDS-Ecto-sp13_S_contig1313:16832..169671681462703.2340395-CDS-Ecto-sp13_S_contig1313:16832..16967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 16833..16967 +
1681462703.243759-CDS-Ecto-sp13_S_contig1313:17807..178641681462703.243759-CDS-Ecto-sp13_S_contig1313:17807..17864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1313 17808..17864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1313.2548.1

>prot_Ecto-sp13_S_contig1313.2548.1 ID=prot_Ecto-sp13_S_contig1313.2548.1|Name=mRNA_Ecto-sp13_S_contig1313.2548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
MSDDDGLRDSDSGDEPQGQDVEEEEEEEEEEEEEEEEEEEEEEAEPSSEE
DSDDGGGRSRRASSSSRGKKRAREVAPAAKKKSRRGDMSRFYDEMAEVDD
DAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQT
MRRLGVRLPESRNDLEGRIDDDDDEDDDDDFRMGPGDGGGGGGGGGGGGA
GRQGAGGGGGGGRGGYSDDDIGDGVGVVDPEVAQQALLPGISDKSLFVVE
CKTGKETSLCLSVMNKALAFKANGQPFGVTSAVVPAGTKGFLYLEAQNEP
AVKAAINGLRGIYHSKLRKVPIPDMTAVLSVRSATRAKPVRQNQFIRLKR
KPYTDDLAKVVEVLAGGERAVVQFIPRIDLVSLSADAETRNARKSLRPPQ
RFFNPEEIKQASDEAMVERRRFQGHG
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mRNA from alignment at Ecto-sp13_S_contig1313:10212..17864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1313.2548.1 ID=mRNA_Ecto-sp13_S_contig1313.2548.1|Name=mRNA_Ecto-sp13_S_contig1313.2548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1313:10212..17864+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTGTCAGGGCCTGTGTCTCGCACGTGGTGGAAGGCGGGAGGCTGGATC
TGTAGTCGTCACTTGCGGTAAGGCAAGCCTTGTGAGCTGCAGCAGGAGAA
CCTGAAAATATATAAAATCAAGTGTTGTTTTTGACGGGGAGAGACAAGCA
ACGAGAGGGCACTCTGCTAATGGAAGAGTCGCGAGGTTACTCGCCTGGCA
GTAGGTAGCAGTATCTCGGTGTCATCGGAGAGCATTGCCTGCCGGAAGCT
CGGGTTGCTGCTGGGCCCACAATTTTTTTGCACCAGTGAGCGATTTGAGT
TCGTTGCTTTGTTTTCTTTTCCAGCAGAAGGTGTCAGTTAAGCGCCTCGC
AGCGAGAGATGTCGGACGACGATGGGCTGCGCGACAGCGACTCTGGGGAT
GAACCCCAAGGGCAAGACGTAGAGGAAGAGGAGGAGGAAGAGGAGGAGGA
AGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGCCGAGCCTTCGT
CCGAGGAAGATTCGGATGATGGCGGTGGTCGGAGCAGGAGGGCGAGCAGC
AGCAGCAGGGGAAAGAAGCGGGCCAGGGAGGTTGCGCCGGCGGCGAAGAA
GAAGTCGCGGAGGGGGGACATGTCAAGGTGTGTGTGTCTGTGATTAACGG
GCCCTGCATCTACTACTGCTTGTACATACGTGCTAGAGGCGTCGGAAAAC
GACAGCGCTTTATTCCCTGTGAAAACTACTTCTGCTGTACTTTGAACCCT
GGAGGTTGTGACTAATTATCTCTCTCACCGCGGTTACGCCGCGTCCGGTC
CGCGTTTGTCGCGAGTCATCATCCCGTCGAACACTTCTGTAAAGCAGTGG
TACCCTACGAATGCGACCAACCAAACCCTAGGGCGAGGTCGTGAAACTCT
GTTGTGTGTGCGTGCACGGTTAACATCTCGTGTGTGTTTACTTCGTACAC
TCTGACCTGGAGCGTGGTTCAGAGCTACCACAATTGCTGGTTCCCCCATG
TCACCGCACGTCCCTCTCCTGAACCTCGAGGGCTTACTATCGTGTTGCAG
ACTGCAACACACAGATTCCCTTCCCGCGTCTTTTGTTCTTTTTGGGTTGG
TCGTTGCAACATTTCGGTTCCTTGCGTGCATGATGGTGTCAGTGTAGCGC
TTTTTTGAAATAGCAGAGCGGGATTTTTGAGCTCAAACCATGTCTTGACC
ATATTACTGTGGTACAGCAGTCGTGGTCCCGGTTTAGCGGTTCCTTCCCT
GTTGAGCGGGATGCCCCGAATAACGACTCCAAAATCCCGTGGCGCGGCTG
CACCTCGGTAGTCTAACTGTTTACACTACTTCGAAGTAATCCGATTCAGC
GGTGATGCCCGCAATGTAGCATTTTGTACCACGATATGGACCGCTAAACC
GGGACCACGACCGTGGCTACACCAGGAGAAGCCATCCATCACGTTCTGGT
TTTGATTAGTAAAAGCCTTTCGTTCTTCTTGTCGTTGTGTCCGAGGCTGG
GGGCGGGGGGGGGGGGGGAGGGGGCAAGACTGACTGATGCAGAGCCTAGA
CCAACAAGGCATGTCTACTACACGTCCCAAATAATCGATTTCCCAACAAC
AAGGAAATGTTAAGACAACAAAATCCAAAACATTAGCCAATTGCCTTGCC
TCTCCTCGCGCCGCCCGTGCCTGCCTCTCCCTAAACCTCATCCTGCTCGC
TTTCTTTCGTCCCAACACCTTGTGTCGTTTGTTGTCGCAGGTTCTACGAT
GAGATGGCGGAGGTAGACGATGACGCGGAGGAGGACTACGACGACAAGGA
CCGCGCTAACGCGAACGAGCTAACCGCCATGGAGAGGTGACCATTTCTCA
CCTCACCCAAGATACAGAGTTATGCGCCCGCGATTTAAGAAACGACCCTC
TTTAGAGAAAAAGGCTCAGATTTTAGCGATGGAAATGAAAAATCGACTAC
GAAATTGGTGTGCGTGTGTGCTCGTTGCAAGCGTACGTGACATATCGGAA
AACTGTTCCGACAGCATCGTGAGTACACCAACGATCGTCGTCAACCACCG
AGGGAACCCTCAGCACGAGGTGGATCTCGTCTACCAACGACAGCGACGCT
CGCGAGTGACCTTTTCTCGACGGTGTTGACGAAATTTGAAACTGAGCCTT
GACCCCCAAGTTGGCGTTTCTTTATCGCGCCCTCAAAGTTGTGAGTATTG
TTCACATATCCGTTCAGCATTCTCCCCGCACGCGATGCATACAGAGACCA
ATACTATAATTGCGTTGTTCGTCTCTGTTAGCATTAAACCGCTCTCTCCA
CACGCGATGTATACAGGGAAAGATGCTGTTTCGCATTGTTTATCTCTGTT
CAGCTTTCAACCACCCTCTTTTGTGTGTGTGCAACTGCTGCTGTCTTCAC
CTCTTAACAAGCTCCGCTGTACAATAGGCTCGCGTCTGTTCCAGTACGCC
TCCTGTTCAGCATTGCTGTAACAGGTCATAAAACGCATTTGGCGAAAAAT
TGGGGTCAGGCTTAGGGTTTTCGTCAGGGTGATCGGCCTACCCCTTCGGT
AGCCACATACAACCCAACATGAGCAGGAGATAGGCCAAGACCATCTCTTT
GTTTTCACACCAAGGTCTTCAGGCCGCCAAATCTATGGAATGGTATGCGG
TATGCAGTTGCGGCTGGTGGACAGACAACTCCTTGTTGGTTGTACTTCTA
CAGGCATGACAGCATTTTTTGGGAGGCGTATTCGATTCAAGGCGACGAAA
AAAAAAAGAAAAATCGCCGCTGTGGCCACGACCAATGCCACCGCCATAAA
GCGCATTATCTTGTGCCGGGGCACGCGTCAGACCAGCACGGGATGAATCG
CTGTTTTTTTACGTGCGCATCGTGCGGCTGACGCCTTACCATGTATGTAT
GCCGTGTTCGGGATTTGTGCGCATTTTGTCGGCATCCACCGCCGCAGCGC
GATGTCCTCAGGTCACGATTGTGCGACCGCCATTCTCGCGTGAAAGTCAT
GAGTTCTGCTACTACGCACATTGACATCTGCTACTTGTACAACGAGCGCT
GCGTGCGTGCTTTATTATCTTTTCTCAACGATTGAGCGTTTTTCTCGGCG
CGTCGCGGCGCTTTTTTTCAGGAGCGAGGCCCTACGCCCTTGATCAACTC
TTTCCATATTTGCGGCTGTAGGACTAACGTAAGTATTGTCGACGACAACA
TCGACGAAAGCGGCTATTTTTTGTCGTGTTTTCCTTCGCGTTCCATGAGA
AACGGCTGTCATAAGCATACCTCCCCACACTGCCGGGACCCAAACATTGC
ACTGTTCACGTCTCTGATCCAACACTGAACCGCCCTCCCGGTGAGAACCG
GCCATGTATATCATTCCCCGAGCATCTCCAACTACCACCCGTCCCTTGTA
CCCATCGCCCGGCCCTGCCTCTCCCTTCTGTCCCAACAACAGAGACATGC
ACGAGCGGATCGCGCGGCGGCAGGAGCAGAGCAAGGCCTTCATGGAGCAG
CCCCTGGAGGAACAGGCCAAGCAGACAATGCGAAGGCTCGGCGTTCGTCT
TCCGGAGTCCCGCAATGACCTAGAAGGTCGCATCGACGACGACGACGACG
AGGACGATGACGACGACTTCCGGATGGGACCCGGTGACGGGGGGGGCGGC
GGCGGGGGCGGCGGCGGCGGCGGGGCGGGTAGGCAGGGGGCGGGGGGAGG
GGGCGGGGGGGGGCGCGGCGGGTACAGCGATGATGACATCGGGGATGGGG
TCGGTGTCGTGGACCCAGAGGTAATTGTTTGTTTCGAGAGTTGTTGTGTT
GTCTTGTGTGTGTTGGGCTTTGTGTACACGTGGAGTGCGTATGTGCCCGC
TATCTTTCGAGGGGGCACAGGCACCCTTTGGGTGTAAGAAGTGCCTTCAG
TGAGAACGATGTTTTTTGGGTGCCGCGGCAGAGCTCGCCTGTTGTTGCTT
CCCCTGCTGCTGCGGCTGCCGATGGTGTTTTTCATCCTCGTAGTCCTGCG
GTAGAGGTGCCGATTGACTCTCCACAGCTGACGCACCGGGGAGGTTGCTT
GCCCGCGTTGTAAACTGTACTGCTGTTGCATTTGTGTACTCTCAACGGTA
TCCATCTGCCGGTGGTGGTTGTGGTGGTGCTGGTGCTGTTGTTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACT
GCTGCTGCTGCTGCTCCTATGCGTGCCATCGTTGCTGGGCCGGCGCGCCC
ACAGGTGGCGCAACAAGCGTTGCTCCCGGGTATCTCGGACAAGAGCCTGT
TCGTCGTGGAATGCAAGACCGGAAAGGAGACTTCGGTGAGGGGGGCTCGC
AGCCCGCAATGATGGTGCACGACTTGCCGCCATGATTCTGTCTCGTGTTT
TTCTCCCTGCGAAAAAGTCGTTAGGTGTGTTTTTTTTCTCTGGAGATCAC
ATGTACCGTCCCGCCTGTGGACATTGCCCTGAAACGGCTGTTCCCAGAGC
TTTGGCCTCGCGCTACACCCCCACTGCTACCAGCAGCTGTGTACCTGGCA
TGGTGTGTTTCAGCGCGAGGGCACGCATGATGAAATAGAGGCAGCAATTT
TGGCACACTACCACCAGCGGCGGTTTTTGTCTCTTTGTTTGGTCCCATTC
CCCCCATGTCTCTCGCTATGCTTCGTGGAGGGGGATGCTTGTCGACGTTT
TACTCCAATTGTCCCCAACGGCGTTCCTTAACACAAACAAATTGTGAAAC
GGTGTAACGAACGCCGCCGCCAATACCAAAACGTCATCGCTGCTGTGTCT
CCGCGTGAGCCCCCCACCTCCGTCTCACCCGCCTCCCATCTGCCGGCCTC
CCTTCCCTCCCCACCCCCGTTTGACAACCAACTGTTCGATGGATGGGTCG
TCAACCTTTCGATCTTGCGGGAAAACAAAACGAAAAAACGAACTGCTTTG
GCACACACCACGGTACAGCTGTGCCTCTCGGTGATGAACAAGGCCTTGGC
GTTCAAGGCGAACGGCCAACCGTTCGGGGTGACCTCCGCTGTCGTGCCCG
CGGGAACCAAGGGTTTCCTGTACCTGGAGGCGCAGAACGAGCCGGCCGTT
AAGGCGGCCATCAACGGATTGAGAGGGGTGCGTACGTGCGTTTTTGTGGA
TGTTTTGTCGTCGTTGTCGTTGTTGTTGTCGTTGTTGTTGTCGTTGTTGT
CTTCACATGAAAAGCCGTTCCGATATCTCCATCCAGTACCTCCCTCTGTC
CGTACTGATCTAACTTACGCTTGACGAGGTCGATTCCCTCCCGTGGTCAT
GGTCTAACTAACTTACCCTAACGAAGGTAATACGCAAATTGATGCCACGT
GTTTTTTTTTTGTAAGCATCGACAGCGCTAACCGGCTGACCAATGAGAAG
ACGCCAGTCGTTAGTGCGGTTGCAAACACGAAATGCCTTGTCATGTGTGT
ATGTGTCTATGTGTAGGCTTGTTTCACACAGACTGTGTTAACCGGCTTGA
CCAATGAAATGTGTACGTTGGCGATTGTGTGTGTGCATGTATCTGTGTCG
TGTTCGCTTGTAGCCGTTGGCAGGTCCTCGGTGTTTGCATGGTATGTGGC
CCCCCTACACAACAAGAACGCGGAGAGTTCAGGAGGGGAAGGCAGGGTAT
CTCAGCACAGTACTTCTCTCGATCGTGGTTGCAGCATGACGAATTCATCG
TGCTTTACGATAACCCTGGGGGTTCCGTGTGTCACGGCGGTATCATTGGC
GGTGTTTTTTTTTTTTTTACAGATTTACCACAGCAAGCTCCGGAAGGTGC
CCATCCCGGACATGACGGCCGTGCTCAGCGTGCGCAGCGCCACCCGCGCC
AAGCCCGTCCGGCAGAACCAGTTCATCCGCCTGAAGCGCAAGCCCTACAC
GGACGACCTGGCCAAGGTGGTAGAGGTGAGCGAGGAACAAAGATACTTTG
AGGTAGTGATTCCGGTATTATGTCTGTGCGATTCAGCCGACTTTTCCGGC
ATTGCAGCGAGCAACCGGCGTTTATTCGGAGTACTATAGAACTTGAATTT
TTTTCATTCCGTCGGTGCTAGACGATTCCACCGGCCTTAAATGGGGAAAC
CGGCATTTTTCGACCGGGTTTTTACCGGTACCACTACTGTACTGGTAAGT
TGCGTTTCACGTGACGTGGGGTTCGGGAGGGGGACTCGGTTTTACCTTGA
CCCGTATTCGTGCGGGAGACGTTTTTTTTTGGTCTGGCCCTGTACTCATG
ATTGACAACACGACCCCGCTTTTTGTCGAGACGGAGATGGACCGGTCATA
CGAAGCCACCGTACACCCAGGTATCTCTCCTATTTTCTTATTCTTTTTTG
TTGTGTGGTTTCCCGTGTATATTGAAAGCGTGTGTGCCGACAGCGATGTA
AGTACGAAGCCACCAGTAGTGCGGTAAGCGCCTCTCTTGTGTTGTTTTTT
GTGTGCTGCAAGACGTGTGTACGACGAAACCACGATGCACCTCTCTTTTG
TGTGTGTGTTTTTATTGTGTGTGTGTGTGTGTGTCCCTACTGCTGTACAA
GCTGAACATGTGTGTGTGCCTGCCGACGCTACGCCACGCTACGCTATGCT
ACCCGACACGTATAATAACAGGTCTTGGCAGGGGGCGAGAGAGCCGTGGT
GCAATTCATCCCTCGCATCGACCTCGTCTCCCTGTCGGCGGACGCTGAAA
CCCGCAACGCACGGAAGTCTCTCCGCCCTCCCCAGCGATTCTTCAATCCG
GAAGAGGTGAGGTTTTTTTTTCCTGCATTTTTTTTACACGCGTAGCATGT
CAGAAGGGCCACGATTCTGGAGAGATATTTTTCGTTTGCGACATGGATAT
CACGAACGAAAGGCTACGATTTGGGAGGAAATCCCCCGTTCCAATGGATT
GTGTGTTCCAAGAATCCCGACCTAAGCGAGCTCGCCAAGTGAACTTTTCT
CTTGCTCCTGTTCCTGGCCTGGAAAGCGCTAGTAGTTCCGTGTGTACACA
GACGGAAGAGAGTGCTGCATTCTTCCCGCAAATGTACCGTAGGAGGGACC
TCAGGCAGAGAGACCCTTCTGTGTGTGACCGCGGGTTGGAGTAGGCGGCA
CAAGCAATTGCTATGAGCGCTGAGGTGAAGCGAAGATAAAAAATACAAAA
TAGCATCGTGTTCTTCTGAGATGAAAACATTCTTTATAACGGTTTTTTGT
TGGGGTATGGCGTGTGCGTCCGGTGACTTCCTTGCGAACCGTTTCATTTC
TTTTTTAGCCGTTTGGCAACCTCTTGTTCTTGATGCTGCCTCTCCATCCG
GTAGCCACGGCGGCGTATCTAGTTGACGTTTCTGTTATGCGGCAAGGTTT
CTCAGACAGCAGCAACGACATGTCGTTTTTGTTAGCCGAAGGAAGCGAGG
CCACGACGAGAACTAATCAACGCCGAATGCGGCTACAACCCGAGGTTCCA
ACCGATCGCTACATGAGGAAGAAAAGAAGCACGAGGACCAGCAACAACAT
TTAACAAACAACTTAATGTTTGAATGCGACGAAACCAAACCAAACCAAGA
TGACATCGGAAACGAATTTCGAACCGACGCCCTGCGCGATGATCAGATCA
AGCAAGCGAGCGACGAGGCCATGGTGGAACGCAGGCGTTTCCAGGGGCAC
GGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1313:10212..17864+

>mRNA_Ecto-sp13_S_contig1313.2548.1 ID=mRNA_Ecto-sp13_S_contig1313.2548.1|Name=mRNA_Ecto-sp13_S_contig1313.2548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1313:10212..17864+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACGACGATGGGCTGCGCGACAGCGACTCTGGGGATGAACCCCA
AGGGCAAGACGTAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAGG
AGGAAGAAGAGGAGGAGGAGGAGGAGGAGGCCGAGCCTTCGTCCGAGGAA
GATTCGGATGATGGCGGTGGTCGGAGCAGGAGGGCGAGCAGCAGCAGCAG
GGGAAAGAAGCGGGCCAGGGAGGTTGCGCCGGCGGCGAAGAAGAAGTCGC
GGAGGGGGGACATGTCAAGGTTCTACGATGAGATGGCGGAGGTAGACGAT
GACGCGGAGGAGGACTACGACGACAAGGACCGCGCTAACGCGAACGAGCT
AACCGCCATGGAGAGAGACATGCACGAGCGGATCGCGCGGCGGCAGGAGC
AGAGCAAGGCCTTCATGGAGCAGCCCCTGGAGGAACAGGCCAAGCAGACA
ATGCGAAGGCTCGGCGTTCGTCTTCCGGAGTCCCGCAATGACCTAGAAGG
TCGCATCGACGACGACGACGACGAGGACGATGACGACGACTTCCGGATGG
GACCCGGTGACGGGGGGGGCGGCGGCGGGGGCGGCGGCGGCGGCGGGGCG
GGTAGGCAGGGGGCGGGGGGAGGGGGCGGGGGGGGGCGCGGCGGGTACAG
CGATGATGACATCGGGGATGGGGTCGGTGTCGTGGACCCAGAGGTGGCGC
AACAAGCGTTGCTCCCGGGTATCTCGGACAAGAGCCTGTTCGTCGTGGAA
TGCAAGACCGGAAAGGAGACTTCGCTGTGCCTCTCGGTGATGAACAAGGC
CTTGGCGTTCAAGGCGAACGGCCAACCGTTCGGGGTGACCTCCGCTGTCG
TGCCCGCGGGAACCAAGGGTTTCCTGTACCTGGAGGCGCAGAACGAGCCG
GCCGTTAAGGCGGCCATCAACGGATTGAGAGGGATTTACCACAGCAAGCT
CCGGAAGGTGCCCATCCCGGACATGACGGCCGTGCTCAGCGTGCGCAGCG
CCACCCGCGCCAAGCCCGTCCGGCAGAACCAGTTCATCCGCCTGAAGCGC
AAGCCCTACACGGACGACCTGGCCAAGGTGGTAGAGGTCTTGGCAGGGGG
CGAGAGAGCCGTGGTGCAATTCATCCCTCGCATCGACCTCGTCTCCCTGT
CGGCGGACGCTGAAACCCGCAACGCACGGAAGTCTCTCCGCCCTCCCCAG
CGATTCTTCAATCCGGAAGAGATCAAGCAAGCGAGCGACGAGGCCATGGT
GGAACGCAGGCGTTTCCAGGGGCACGGG
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