mRNA_Ecto-sp13_S_contig10223.246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.770e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2

Query:  650 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIISGGN 868
            RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVE+GTGISREQILSAIISGGN
Sbjct:  136 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIISGGN 208

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-14
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG-PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
            MV RNPNLLA +P G+GGA  AK DT  +SYV+AATRP+G P L  G AF LA P +E  TG+ R+Q LS I
Sbjct:  134 MVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATRPIGKPALALG-AFALATPFIEGVTGVPRDQFLSII 204

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 68.6 bits (166), Expect = 1.270e-9
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAII 856
            MV +NP LLA+ P+G GGA +    TMQ SY++  TRP GP LL+GL F L  P +E  TGI  +  +++ +
Sbjct:  115 MVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIPIKTTITSAL 186

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.620e-8
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 2

Query:  689 GGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQIL 844
            GGA  AK DT  MSYVIA TRPLGPVLL GL   L++PLVE  TGI R ++L
Sbjct:  125 GGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.790e-8
Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGI 826
            MV RNP LLA+ P     AA A   TMQ SY++AATRP GPVLL G+   L +P +E  TGI
Sbjct:  158 MVQRNPGLLAIPPAN---AAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGI 216

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.110e-7
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2

Query:  644 VTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQIL 844
            V RNP L++V PTG+GGA  A  +T+ +SYV+ ATR  G V L  LAF L  PL+E  TG+  RE IL
Sbjct:  124 VLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGVHFREAIL 191

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S4IU94_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU94_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.260e-6
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTG-----FGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQILSAI 853
            ++ RNP LL ++P G     +GGAA A  +T+ +SYVIAATRPLG   L GL   +  P ++  TG+  R+  L A+
Sbjct:  160 LLIRNPGLLGIKPDGWGEEGYGGAATAGPETIALSYVIAATRPLGNFGLVGLLALVLTPGIDAATGLGLRDAFLGAL 236

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 59.3 bits (142), Expect = 3.220e-6
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG---PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
            MV RNP LL+V+P     AA+A   TMQMSYV+  TRP+G   PVL+ GL   LA+P +E   G+ + ++LS++
Sbjct:  153 MVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGL---LAVPALESALGVGKGELLSSL 220

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.110e-6
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3

Query:    3 LGYDGSVFRATFEAFTEVFGEEETKGFV 86
            LGYDGSVFRATFEAF+EVFGEEETKG V
Sbjct:  107 LGYDGSVFRATFEAFSEVFGEEETKGCV 134

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BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC)

HSP 1 Score: 57.8 bits (138), Expect = 5.170e-6
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2

Query:  641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIIS 859
            MV RNP LL V P     A    S TMQ+SY+++ TRPLG   L G+   L IP++E   G+ R +++ ++++
Sbjct:  107 MVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTRPLGNAGLAGIGSLLLIPVIEGTLGLQRGELIGSLLN 176

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10

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POSITION

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Match Name	E-value	Identity	Description
D7FYY7_ECTSI	5.770e-36	98.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S1UHZ5_9STRA	1.280e-14	59.72	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
B7FNV7_PHATC	1.270e-9	45.83	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7R9UE42_9STRA	1.620e-8	65.38	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S2MUE2_9STRA	6.790e-8	54.84	Hypothetical protein (Fragment) n=1 Tax=Helicothec...	[more]
A0A7S2K6C2_9STRA	2.110e-7	52.94	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
A0A7S4IU94_9STRA	2.260e-6	42.86	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
B5YMT8_THAPS	3.220e-6	47.30	Predicted protein n=1 Tax=Thalassiosira pseudonana...	[more]
A0A6H5KAE4_9PHAE	4.110e-6	92.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
K0RXR5_THAOC	5.170e-6	39.73	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10223.246.1	prot_Ecto-sp13_S_contig10223.246.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10223 1191..3489 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462516.5748887-UTR-Ecto-sp13_S_contig10223:688..1190	1681462516.5748887-UTR-Ecto-sp13_S_contig10223:688..1190	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10223 689..1190 +
1681462516.6160212-UTR-Ecto-sp13_S_contig10223:3489..4602	1681462516.6160212-UTR-Ecto-sp13_S_contig10223:3489..4602	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10223 3490..4602 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462516.5844538-CDS-Ecto-sp13_S_contig10223:1190..1358	1681462516.5844538-CDS-Ecto-sp13_S_contig10223:1190..1358	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10223 1191..1358 +
1681462516.592439-CDS-Ecto-sp13_S_contig10223:1893..1973	1681462516.592439-CDS-Ecto-sp13_S_contig10223:1893..1973	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10223 1894..1973 +
1681462516.6003258-CDS-Ecto-sp13_S_contig10223:2768..2823	1681462516.6003258-CDS-Ecto-sp13_S_contig10223:2768..2823	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10223 2769..2823 +
1681462516.6081386-CDS-Ecto-sp13_S_contig10223:3423..3489	1681462516.6081386-CDS-Ecto-sp13_S_contig10223:3423..3489	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10223 3424..3489 +