mRNA_Ecto-sp13_S_contig10223.246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI) HSP 1 Score: 144 bits (363), Expect = 5.770e-36 Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2
Query: 650 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIISGGN 868
RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVE+GTGISREQILSAIISGGN
Sbjct: 136 RNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAIISGGN 208
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.280e-14 Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG-PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
MV RNPNLLA +P G+GGA AK DT +SYV+AATRP+G P L G AF LA P +E TG+ R+Q LS I
Sbjct: 134 MVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATRPIGKPALALG-AFALATPFIEGVTGVPRDQFLSII 204
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC) HSP 1 Score: 68.6 bits (166), Expect = 1.270e-9 Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAII 856
MV +NP LLA+ P+G GGA + TMQ SY++ TRP GP LL+GL F L P +E TGI + +++ +
Sbjct: 115 MVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIPIKTTITSAL 186
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.620e-8 Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 2
Query: 689 GGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQIL 844
GGA AK DT MSYVIA TRPLGPVLL GL L++PLVE TGI R ++L
Sbjct: 125 GGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 6.790e-8 Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGI 826
MV RNP LLA+ P AA A TMQ SY++AATRP GPVLL G+ L +P +E TGI
Sbjct: 158 MVQRNPGLLAIPPAN---AAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGI 216
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 2.110e-7 Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 2
Query: 644 VTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQIL 844
V RNP L++V PTG+GGA A +T+ +SYV+ ATR G V L LAF L PL+E TG+ RE IL
Sbjct: 124 VLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGVHFREAIL 191
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A7S4IU94_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU94_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.260e-6 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTG-----FGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGIS-REQILSAI 853
++ RNP LL ++P G +GGAA A +T+ +SYVIAATRPLG L GL + P ++ TG+ R+ L A+
Sbjct: 160 LLIRNPGLLGIKPDGWGEEGYGGAATAGPETIALSYVIAATRPLGNFGLVGLLALVLTPGIDAATGLGLRDAFLGAL 236
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS) HSP 1 Score: 59.3 bits (142), Expect = 3.220e-6 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLG---PVLLFGLAFCLAIPLVEIGTGISREQILSAI 853
MV RNP LL+V+P AA+A TMQMSYV+ TRP+G PVL+ GL LA+P +E G+ + ++LS++
Sbjct: 153 MVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGL---LAVPALESALGVGKGELLSSL 220
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 4.110e-6 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3
Query: 3 LGYDGSVFRATFEAFTEVFGEEETKGFV 86
LGYDGSVFRATFEAF+EVFGEEETKG V
Sbjct: 107 LGYDGSVFRATFEAFSEVFGEEETKGCV 134
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC) HSP 1 Score: 57.8 bits (138), Expect = 5.170e-6 Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2
Query: 641 MVTRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEIGTGISREQILSAIIS 859
MV RNP LL V P A S TMQ+SY+++ TRPLG L G+ L IP++E G+ R +++ ++++
Sbjct: 107 MVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTRPLGNAGLAGIGSLLLIPVIEGTLGLQRGELIGSLLN 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10223.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10223.246.1 >prot_Ecto-sp13_S_contig10223.246.1 ID=prot_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp MINTSILTCVSSFDSLFTSVCYPPSPCPSPVHAVGGATGISCSGNRMVTRback to top mRNA from alignment at Ecto-sp13_S_contig10223:689..4602+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10223.246.1 ID=mRNA_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10223:689..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10223:689..4602+ >mRNA_Ecto-sp13_S_contig10223.246.1 ID=mRNA_Ecto-sp13_S_contig10223.246.1|Name=mRNA_Ecto-sp13_S_contig10223.246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10223:689..4602+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |