mRNA_Ecto-sp13_S_contig1266.2201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE) HSP 1 Score: 517 bits (1331), Expect = 1.040e-181 Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 1
Query: 361 IADPPPLTHDQLPEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDG 1221
+ADPPPLTHDQLPEES+YLLDGTSMLFRAFYGRGAGGY+ASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTF+MEGYEADDVMATLAR WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGS+EVLAKFGV+PSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSM IRGSK LQTLLSQPGIQEEAMLYREIATLDDE + G
Sbjct: 1 MADPPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLAR-----------WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSDEVLAKFGVQPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMGIRGSKGLQTLLSQPGIQEEAMLYREIATLDDEGSVSG 276
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A835ZC56_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC56_9STRA) HSP 1 Score: 212 bits (539), Expect = 1.220e-62 Identity = 111/185 (60.00%), Postives = 133/185 (71.89%), Query Frame = 1
Query: 343 VEARPAIADPPPLTHDQLPEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRR 897
V A PA H +P+E+L++LDGTSMLFRA +G+G+ Y+A++GATEV AVLAMGIE AQFI EV+PRY+A+AFDV R +TFRR+L P YKA R P P DL LQ+PLA AL++ LGC GYEADDVMATLA WGRS+GL VV+ S DKDM QLVR+RVHVM PRR
Sbjct: 43 VAAAPAAGGITEFKHTDVPDETLWVLDGTSMLFRAHFGKGSQSYLAADGATEVAAVLAMGIELAQFIEEVQPRYLAVAFDVDRNSTFRRQLMPTYKAHRPPHPRDLLLQLPLATALTKCLGCTCLSQRGYEADDVMATLAT-----------WGRSIGLSVVLVSEDKDMLQLVRERVHVMAPRR 216
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A2E9QWV8_9DELT (53EXOc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9QWV8_9DELT) HSP 1 Score: 179 bits (453), Expect = 5.370e-49 Identity = 112/309 (36.25%), Postives = 163/309 (52.75%), Query Frame = 1
Query: 415 LLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDR----VHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQE 1329
L DGTSMLFR++YG + +++ +G EVG V +G + +P A+ FD G+ T FR ++Y YKA R P DL Q L + + +LG R + + GYEADD++ATL R G G + S DKD+CQLV D+ V +R Y G V + GVKPS D L+GD DNIPG+KG+GPK LL+ FE ++ ++A +D V ++ RG+K+L L +E+ + R++ TL +VP+D A + + G A+G LGF PL ++E
Sbjct: 12 LYDGTSMLFRSYYGMRS--FLSPDGV-EVGGVFGVGQTLVSMMRRQRPHNCAVVFDAGQRT-FRNEIYELYKANRGEPPEDLIPQFDLVQEMIRSLGFRCYCVPGYEADDLIATLTSL-----------ARKSGFGTRIVSVDKDICQLVTDQQPPVVIYHAKKRLFYNEAG---VFERMGVKPSQAIDYQALVGDSTDNIPGIKGVGPKAAQALLDSFENIDAIYADIDRVQTLSFRGAKSLAKKLEAG--REQVAIARQLVTLKHDVPIDTTIASFADETRWEGPMLNADGFFDQLGFHRPLYQLRE 300
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A2D5BSF5_9BACT (Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BSF5_9BACT) HSP 1 Score: 177 bits (450), Expect = 9.250e-49 Identity = 115/302 (38.08%), Postives = 165/302 (54.64%), Query Frame = 1
Query: 409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPL 1314
L++LDGT+ LFRA++ A +G EVGAV G + + +P ++A+ FD G TFR +++P YKA R P DL Q LA L ALG +F +GYEADD+MATLAR+ A GL + + DKD+ QLV D V V+ P+ + V +FGV+ S L D L GD DN+PGVKG+GPK L+ F +++G++ LD V ++++RG+K L L + +EEA L R + LD+E P++ + T RG A+ S +GF +PL
Sbjct: 6 LHVLDGTAALFRAWFS--VNERPAPDGV-EVGAVWGFGQWLGKVVRRTRPTHLAVVFDAGM-WTFRNEIWPDYKANRGEPPDDLVPQFDLAYDLCVALGFPSFRTDGYEADDLMATLARRAVGA-----------GLEAALVTPDKDVLQLVSDAVCVLDPKE--LDAIDGPMVKERFGVEASQLVDYLALAGDPTDNVPGVKGVGPKTAQALIAAFGSVDGLYEDLDRVATLDVRGAKGLGDKLREH--EEEARLSRRLVVLDEEAPMEP-EIRTLGDLRLRGTPDGADRFFSRVGFPSPL 287
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A1F9K7W9_9DELT (53EXOc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22 TaxID=1797892 RepID=A0A1F9K7W9_9DELT) HSP 1 Score: 174 bits (441), Expect = 2.470e-47 Identity = 100/273 (36.63%), Postives = 161/273 (58.97%), Query Frame = 1
Query: 397 PEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
P +YL+DG+S +FRAF+ + ++ A+L +F+ KP Y+A+A D G+ET FR ++Y YK R P L Q P + + +A+ ++EG+EADD++ATLA+ D A GL VV+ S DKD+ QLV ++V ++ ++ + + + V KFGV P + ++ GL+GD DNIPGVKGIG K S L++++E+LE +FA LD V +++G++ ++ L+ +EEA+L RE+AT+ +VP+
Sbjct: 4 PPPCVYLVDGSSYIFRAFFALPP---LTNSAGLPTQAILGFTTMTLKFLKTYKPEYLAVALDAGKET-FRNQIYQAYKGNRPEAPPQLIPQFPYIRKVLKAMSVVVLELEGFEADDIIATLAK-DFSAR----------GLSVVIVSGDKDLMQLVGEKVKLLDTAKEKW--IDAAAVKEKFGVAPEKVTEVMGLMGDAIDNIPGVKGIGEKTASALIQRYESLENLFAHLDDVEKSDLKGARRIRNALADR--KEEALLSRELATVRTDVPI 257
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A3N9VXZ7_9DELT (Ribonuclease H n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A3N9VXZ7_9DELT) HSP 1 Score: 177 bits (450), Expect = 8.460e-47 Identity = 107/269 (39.78%), Postives = 159/269 (59.11%), Query Frame = 1
Query: 409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
L+LLDG+S ++RA+YG +A++G AV + E P Y+A+ FD RE TFRR+LYP+YKA R +P DL LQ+P + + +AL + G+EADDV+A+LAR+ A + GL V V + DKD+ Q+V +R+ ++ +D + G EVL +FGV P +PD+ GL GD ADNIPGV GIG K ++L+++F +LEGVF D + G K ++L S Q++A+L + +AT+ +V L
Sbjct: 7 LFLLDGSSYIYRAYYGVRD---LATSGGMPTNAVFGFTRMLLCLLQEHSPEYLAVVFDRPREETFRRELYPEYKANRDAMPEDLVLQVPYIRKVLQALNIPALEAPGFEADDVIASLARRSA-----------AEGLRVTVVTGDKDLMQIVGERICLLDTMKDCCS--GPLEVLERFGVPPELVPDVLGLAGDTADNIPGVPGIGEKTAAKLVKQFGSLEGVFRWKD-----LVNGKKRRESLQSY---QDQALLSKTLATVRYDVDL 251
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A353MEJ4_9DELT (Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MEJ4_9DELT) HSP 1 Score: 177 bits (448), Expect = 1.800e-46 Identity = 107/270 (39.63%), Postives = 153/270 (56.67%), Query Frame = 1
Query: 409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLD 1218
LYLLDG+S ++RA+YG A++G AVL + + E +P Y A+ FD RE TFRR +YP YKA R+ VP DL LQ+P + + +AL + G+EADDV+ATLAR+ A A G+ V V + DKD+ Q+V DR+ ++ + + G +EVL +FGV P + D+ GL GD ADNIPGV GIG K + L+++F +LEGV + V R S L ++A L + +AT+ +VPL+
Sbjct: 7 LYLLDGSSYIYRAYYGFRES---ATSGGMPTNAVLGFTRMLLELVQEHRPEYFAVVFDPPREETFRRDIYPAYKAHREAVPEDLLLQLPYIRRILQALNVPALEAPGFEADDVIATLAREYAAA-----------GIEVTVVTGDKDLLQIVSDRIALLDTMKGKRS--GPQEVLDRFGVAPELVADVLGLAGDSADNIPGVPGIGEKTAAMLVQRFGSLEGVLQWITLVNGKSRRESLHLHA--------DQARLSKRLATVRYDVPLE 252
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A533SDF6_9BACT (Ribonuclease H n=1 Tax=bacterium TaxID=1869227 RepID=A0A533SDF6_9BACT) HSP 1 Score: 176 bits (447), Expect = 2.280e-46 Identity = 105/269 (39.03%), Postives = 156/269 (57.99%), Query Frame = 1
Query: 409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
LYLLDG+S ++RAFYG +A++G AV + E P Y+A+ FD R+ TFRR++YP+YKA R +P DL QIP + + EAL T + G+EADDV+ATLAR+ A G+ V V + DKD+ Q+V D++ ++ +D + G +EVL +FGV P +PD+ GL GD +DNIPGV GIG K ++L+++F +LEGV + G K + L + Q++A+L + +AT+ +V L
Sbjct: 7 LYLLDGSSYIYRAFYGVRD---LATSGGMPTNAVFGFTRMLLGLLQEHTPEYLAVVFDRPRDETFRREIYPEYKANRDAMPEDLVPQIPYIRKVLEALNIPTLEAPGFEADDVIATLARRTAEE-----------GIRVTVVTGDKDLMQIVNDKICLLDTMKDSCS--GPQEVLERFGVPPERVPDVLGLSGDTSDNIPGVPGIGEKTAAKLVKQFGSLEGVLR-----WRSLVNGKKCRENLHAY---QDQALLSKTLATVRYDVDL 251
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A1G2W2X7_9DELT (Ribonuclease H n=1 Tax=Desulfuromonadaceae bacterium GWC2_58_13 TaxID=1801896 RepID=A0A1G2W2X7_9DELT) HSP 1 Score: 176 bits (445), Expect = 4.670e-46 Identity = 119/321 (37.07%), Postives = 169/321 (52.65%), Query Frame = 1
Query: 409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATL----DDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQEGSKRPSARAS 1359
LYLLDG+S ++RA+YG +A+ G V AV + E +P Y+A+ FD RE TFRRK+YP YKA R +P DL QIP K + +AL + G+EADDV+ATLAR+ A + G+ V V + DKD+ Q+V DR+ ++ +D + G EV +FGV P +PD+ GL GD +DNIPGV G+G K S L+++F +LEGVF + G K + LL+ +++A L + +AT+ D VPL ++ T + E E A F P + E S AS
Sbjct: 7 LYLLDGSSYIYRAYYGFRD---LATAGGMPVNAVFGFTRMLLGLLQETRPDYLAVVFDRPREETFRRKIYPGYKAHRDAMPEDLVPQIPYIKRIVQALNIPALEAPGFEADDVIATLARRYA-----------ADGIEVTVVTGDKDLMQIVGDRIGLLDTMKDKRS--GPREVCDRFGVPPELVPDVLGLAGDASDNIPGVPGLGEKTASELVQRFGSLEGVFE-----WKSLVSGKKRRENLLAH---EDQARLSKILATVRYDVDLPVPLAELERQTPNLAELIPLLRELEFETLATAFTPPAPGVVELHSDGSGTAS 303
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: UPI001CC9B019 (hypothetical protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CC9B019) HSP 1 Score: 170 bits (431), Expect = 8.170e-46 Identity = 116/312 (37.18%), Postives = 162/312 (51.92%), Query Frame = 1
Query: 397 PEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVH--VMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQ 1326
P L+++D T++LFRA+YG S VGAVL +G + P V + +D GR TTFR ++ P+YKA R P DL Q A+ A G T + +EADD+MATLAR A S GL + S DKD+CQLVRD V++ R G T G+ V+ + GV+PS + D L+GD +DN+PGV G+GPK LL F L+ ++A L V + +RG+K L L +E A L R + L D VPL G+D + + G +A+ +ALG LR ++
Sbjct: 5 PAPELWVIDATALLFRAYYGMPP---KLSPAGEPVGAVLGLGHLLRGLLRRA-PERVVLVYDAGR-TTFRNRIDPRYKANRGEPPPDLAPQFERARQFGAAAGFVTLSVPDFEADDLMATLARGAA-----------SAGLRTRLLSVDKDLCQLVRDEAPAVVLEDPRTGDTWDGAG-VVRRMGVRPSQVVDYLALVGDTSDNVPGVPGVGPKAAQALLAAFGDLDALYASLGEVAGLPLRGAKGLAARLEAG--REAAFLARSLVRLHDAVPLGGLDLHAHTR--WTGPRDDADEFFTALGSVGALRGLR 295 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1266.2201.1 >prot_Ecto-sp13_S_contig1266.2201.1 ID=prot_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=456bp MRRGNRGAVRAPLFALSLALHANLTSSLLHNLGDAISRNHATTTAAAAGTback to top mRNA from alignment at Ecto-sp13_S_contig1266:86..6030- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1266.2201.1 ID=mRNA_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1266:86..6030- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1266:86..6030- >mRNA_Ecto-sp13_S_contig1266.2201.1 ID=mRNA_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1368bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1266:86..6030- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |