mRNA_Ecto-sp13_S_contig1266.2201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1266.2201.1
Unique NamemRNA_Ecto-sp13_S_contig1266.2201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE)

HSP 1 Score: 517 bits (1331), Expect = 1.040e-181
Identity = 264/287 (91.99%), Postives = 271/287 (94.43%), Query Frame = 1
Query:  361 IADPPPLTHDQLPEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDG 1221
            +ADPPPLTHDQLPEES+YLLDGTSMLFRAFYGRGAGGY+ASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTF+MEGYEADDVMATLAR           WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGS+EVLAKFGV+PSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSM IRGSK LQTLLSQPGIQEEAMLYREIATLDDE  + G
Sbjct:    1 MADPPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLAR-----------WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSDEVLAKFGVQPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMGIRGSKGLQTLLSQPGIQEEAMLYREIATLDDEGSVSG 276          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A835ZC56_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC56_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.220e-62
Identity = 111/185 (60.00%), Postives = 133/185 (71.89%), Query Frame = 1
Query:  343 VEARPAIADPPPLTHDQLPEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRR 897
            V A PA        H  +P+E+L++LDGTSMLFRA +G+G+  Y+A++GATEV AVLAMGIE AQFI EV+PRY+A+AFDV R +TFRR+L P YKA R P P DL LQ+PLA AL++ LGC      GYEADDVMATLA            WGRS+GL VV+ S DKDM QLVR+RVHVM PRR
Sbjct:   43 VAAAPAAGGITEFKHTDVPDETLWVLDGTSMLFRAHFGKGSQSYLAADGATEVAAVLAMGIELAQFIEEVQPRYLAVAFDVDRNSTFRRQLMPTYKAHRPPHPRDLLLQLPLATALTKCLGCTCLSQRGYEADDVMATLAT-----------WGRSIGLSVVLVSEDKDMLQLVRERVHVMAPRR 216          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A2E9QWV8_9DELT (53EXOc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E9QWV8_9DELT)

HSP 1 Score: 179 bits (453), Expect = 5.370e-49
Identity = 112/309 (36.25%), Postives = 163/309 (52.75%), Query Frame = 1
Query:  415 LLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDR----VHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQE 1329
            L DGTSMLFR++YG  +  +++ +G  EVG V  +G      +   +P   A+ FD G+ T FR ++Y  YKA R   P DL  Q  L + +  +LG R + + GYEADD++ATL               R  G G  + S DKD+CQLV D+    V     +R  Y   G   V  + GVKPS   D   L+GD  DNIPG+KG+GPK    LL+ FE ++ ++A +D V ++  RG+K+L   L     +E+  + R++ TL  +VP+D   A  +    + G    A+G    LGF  PL  ++E
Sbjct:   12 LYDGTSMLFRSYYGMRS--FLSPDGV-EVGGVFGVGQTLVSMMRRQRPHNCAVVFDAGQRT-FRNEIYELYKANRGEPPEDLIPQFDLVQEMIRSLGFRCYCVPGYEADDLIATLTSL-----------ARKSGFGTRIVSVDKDICQLVTDQQPPVVIYHAKKRLFYNEAG---VFERMGVKPSQAIDYQALVGDSTDNIPGIKGVGPKAAQALLDSFENIDAIYADIDRVQTLSFRGAKSLAKKLEAG--REQVAIARQLVTLKHDVPIDTTIASFADETRWEGPMLNADGFFDQLGFHRPLYQLRE 300          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A2D5BSF5_9BACT (Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BSF5_9BACT)

HSP 1 Score: 177 bits (450), Expect = 9.250e-49
Identity = 115/302 (38.08%), Postives = 165/302 (54.64%), Query Frame = 1
Query:  409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPL 1314
            L++LDGT+ LFRA++        A +G  EVGAV   G    + +   +P ++A+ FD G   TFR +++P YKA R   P DL  Q  LA  L  ALG  +F  +GYEADD+MATLAR+   A           GL   + + DKD+ QLV D V V+ P+      +    V  +FGV+ S L D   L GD  DN+PGVKG+GPK    L+  F +++G++  LD V ++++RG+K L   L +   +EEA L R +  LD+E P++  +  T      RG    A+   S +GF +PL
Sbjct:    6 LHVLDGTAALFRAWFS--VNERPAPDGV-EVGAVWGFGQWLGKVVRRTRPTHLAVVFDAGM-WTFRNEIWPDYKANRGEPPDDLVPQFDLAYDLCVALGFPSFRTDGYEADDLMATLARRAVGA-----------GLEAALVTPDKDVLQLVSDAVCVLDPKE--LDAIDGPMVKERFGVEASQLVDYLALAGDPTDNVPGVKGVGPKTAQALIAAFGSVDGLYEDLDRVATLDVRGAKGLGDKLREH--EEEARLSRRLVVLDEEAPMEP-EIRTLGDLRLRGTPDGADRFFSRVGFPSPL 287          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A1F9K7W9_9DELT (53EXOc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22 TaxID=1797892 RepID=A0A1F9K7W9_9DELT)

HSP 1 Score: 174 bits (441), Expect = 2.470e-47
Identity = 100/273 (36.63%), Postives = 161/273 (58.97%), Query Frame = 1
Query:  397 PEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
            P   +YL+DG+S +FRAF+       + ++      A+L       +F+   KP Y+A+A D G+ET FR ++Y  YK  R   P  L  Q P  + + +A+     ++EG+EADD++ATLA+ D  A           GL VV+ S DKD+ QLV ++V ++   ++ +  + +  V  KFGV P  + ++ GL+GD  DNIPGVKGIG K  S L++++E+LE +FA LD V   +++G++ ++  L+    +EEA+L RE+AT+  +VP+
Sbjct:    4 PPPCVYLVDGSSYIFRAFFALPP---LTNSAGLPTQAILGFTTMTLKFLKTYKPEYLAVALDAGKET-FRNQIYQAYKGNRPEAPPQLIPQFPYIRKVLKAMSVVVLELEGFEADDIIATLAK-DFSAR----------GLSVVIVSGDKDLMQLVGEKVKLLDTAKEKW--IDAAAVKEKFGVAPEKVTEVMGLMGDAIDNIPGVKGIGEKTASALIQRYESLENLFAHLDDVEKSDLKGARRIRNALADR--KEEALLSRELATVRTDVPI 257          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A3N9VXZ7_9DELT (Ribonuclease H n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A3N9VXZ7_9DELT)

HSP 1 Score: 177 bits (450), Expect = 8.460e-47
Identity = 107/269 (39.78%), Postives = 159/269 (59.11%), Query Frame = 1
Query:  409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
            L+LLDG+S ++RA+YG      +A++G     AV          + E  P Y+A+ FD  RE TFRR+LYP+YKA R  +P DL LQ+P  + + +AL     +  G+EADDV+A+LAR+ A           + GL V V + DKD+ Q+V +R+ ++   +D  +  G  EVL +FGV P  +PD+ GL GD ADNIPGV GIG K  ++L+++F +LEGVF   D      + G K  ++L S    Q++A+L + +AT+  +V L
Sbjct:    7 LFLLDGSSYIYRAYYGVRD---LATSGGMPTNAVFGFTRMLLCLLQEHSPEYLAVVFDRPREETFRRELYPEYKANRDAMPEDLVLQVPYIRKVLQALNIPALEAPGFEADDVIASLARRSA-----------AEGLRVTVVTGDKDLMQIVGERICLLDTMKDCCS--GPLEVLERFGVPPELVPDVLGLAGDTADNIPGVPGIGEKTAAKLVKQFGSLEGVFRWKD-----LVNGKKRRESLQSY---QDQALLSKTLATVRYDVDL 251          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A353MEJ4_9DELT (Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MEJ4_9DELT)

HSP 1 Score: 177 bits (448), Expect = 1.800e-46
Identity = 107/270 (39.63%), Postives = 153/270 (56.67%), Query Frame = 1
Query:  409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLD 1218
            LYLLDG+S ++RA+YG       A++G     AVL       + + E +P Y A+ FD  RE TFRR +YP YKA R+ VP DL LQ+P  + + +AL     +  G+EADDV+ATLAR+ A A           G+ V V + DKD+ Q+V DR+ ++   +   +  G +EVL +FGV P  + D+ GL GD ADNIPGV GIG K  + L+++F +LEGV   +  V     R S  L          ++A L + +AT+  +VPL+
Sbjct:    7 LYLLDGSSYIYRAYYGFRES---ATSGGMPTNAVLGFTRMLLELVQEHRPEYFAVVFDPPREETFRRDIYPAYKAHREAVPEDLLLQLPYIRRILQALNVPALEAPGFEADDVIATLAREYAAA-----------GIEVTVVTGDKDLLQIVSDRIALLDTMKGKRS--GPQEVLDRFGVAPELVADVLGLAGDSADNIPGVPGIGEKTAAMLVQRFGSLEGVLQWITLVNGKSRRESLHLHA--------DQARLSKRLATVRYDVPLE 252          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A533SDF6_9BACT (Ribonuclease H n=1 Tax=bacterium TaxID=1869227 RepID=A0A533SDF6_9BACT)

HSP 1 Score: 176 bits (447), Expect = 2.280e-46
Identity = 105/269 (39.03%), Postives = 156/269 (57.99%), Query Frame = 1
Query:  409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPL 1215
            LYLLDG+S ++RAFYG      +A++G     AV          + E  P Y+A+ FD  R+ TFRR++YP+YKA R  +P DL  QIP  + + EAL   T +  G+EADDV+ATLAR+ A             G+ V V + DKD+ Q+V D++ ++   +D  +  G +EVL +FGV P  +PD+ GL GD +DNIPGV GIG K  ++L+++F +LEGV           + G K  + L +    Q++A+L + +AT+  +V L
Sbjct:    7 LYLLDGSSYIYRAFYGVRD---LATSGGMPTNAVFGFTRMLLGLLQEHTPEYLAVVFDRPRDETFRREIYPEYKANRDAMPEDLVPQIPYIRKVLEALNIPTLEAPGFEADDVIATLARRTAEE-----------GIRVTVVTGDKDLMQIVNDKICLLDTMKDSCS--GPQEVLERFGVPPERVPDVLGLSGDTSDNIPGVPGIGEKTAAKLVKQFGSLEGVLR-----WRSLVNGKKCRENLHAY---QDQALLSKTLATVRYDVDL 251          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: A0A1G2W2X7_9DELT (Ribonuclease H n=1 Tax=Desulfuromonadaceae bacterium GWC2_58_13 TaxID=1801896 RepID=A0A1G2W2X7_9DELT)

HSP 1 Score: 176 bits (445), Expect = 4.670e-46
Identity = 119/321 (37.07%), Postives = 169/321 (52.65%), Query Frame = 1
Query:  409 LYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATL----DDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQEGSKRPSARAS 1359
            LYLLDG+S ++RA+YG      +A+ G   V AV          + E +P Y+A+ FD  RE TFRRK+YP YKA R  +P DL  QIP  K + +AL     +  G+EADDV+ATLAR+ A           + G+ V V + DKD+ Q+V DR+ ++   +D  +  G  EV  +FGV P  +PD+ GL GD +DNIPGV G+G K  S L+++F +LEGVF          + G K  + LL+    +++A L + +AT+    D  VPL  ++  T +         E E    A  F  P   + E     S  AS
Sbjct:    7 LYLLDGSSYIYRAYYGFRD---LATAGGMPVNAVFGFTRMLLGLLQETRPDYLAVVFDRPREETFRRKIYPGYKAHRDAMPEDLVPQIPYIKRIVQALNIPALEAPGFEADDVIATLARRYA-----------ADGIEVTVVTGDKDLMQIVGDRIGLLDTMKDKRS--GPREVCDRFGVPPELVPDVLGLAGDASDNIPGVPGLGEKTASELVQRFGSLEGVFE-----WKSLVSGKKRRENLLAH---EDQARLSKILATVRYDVDLPVPLAELERQTPNLAELIPLLRELEFETLATAFTPPAPGVVELHSDGSGTAS 303          
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Match: UPI001CC9B019 (hypothetical protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CC9B019)

HSP 1 Score: 170 bits (431), Expect = 8.170e-46
Identity = 116/312 (37.18%), Postives = 162/312 (51.92%), Query Frame = 1
Query:  397 PEESLYLLDGTSMLFRAFYGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVMATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVH--VMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLDDEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQ 1326
            P   L+++D T++LFRA+YG        S     VGAVL +G      +    P  V + +D GR TTFR ++ P+YKA R   P DL  Q   A+    A G  T  +  +EADD+MATLAR  A           S GL   + S DKD+CQLVRD     V++  R G T  G+  V+ + GV+PS + D   L+GD +DN+PGV G+GPK    LL  F  L+ ++A L  V  + +RG+K L   L     +E A L R +  L D VPL G+D    +   + G   +A+   +ALG    LR ++
Sbjct:    5 PAPELWVIDATALLFRAYYGMPP---KLSPAGEPVGAVLGLGHLLRGLLRRA-PERVVLVYDAGR-TTFRNRIDPRYKANRGEPPPDLAPQFERARQFGAAAGFVTLSVPDFEADDLMATLARGAA-----------SAGLRTRLLSVDKDLCQLVRDEAPAVVLEDPRTGDTWDGAG-VVRRMGVRPSQVVDYLALVGDTSDNVPGVPGVGPKAAQALLAAFGDLDALYASLGEVAGLPLRGAKGLAARLEAG--REAAFLARSLVRLHDAVPLGGLDLHAHTR--WTGPRDDADEFFTALGSVGALRGLR 295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1266.2201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEW8_9PHAE1.040e-18191.9953EXOc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZC56_9STRA1.220e-6260.005'-3' exonuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A2E9QWV8_9DELT5.370e-4936.2553EXOc domain-containing protein n=1 Tax=Deltaprot... [more]
A0A2D5BSF5_9BACT9.250e-4938.08Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bac... [more]
A0A1F9K7W9_9DELT2.470e-4736.6353EXOc domain-containing protein n=1 Tax=Deltaprot... [more]
A0A3N9VXZ7_9DELT8.460e-4739.78Ribonuclease H n=1 Tax=Geobacter sp. TaxID=46610 R... [more]
A0A353MEJ4_9DELT1.800e-4639.63Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422... [more]
A0A533SDF6_9BACT2.280e-4639.03Ribonuclease H n=1 Tax=bacterium TaxID=1869227 Rep... [more]
A0A1G2W2X7_9DELT4.670e-4637.07Ribonuclease H n=1 Tax=Desulfuromonadaceae bacteri... [more]
UPI001CC9B0198.170e-4637.18hypothetical protein n=1 Tax=Nannocystis pusilla T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1266contigEcto-sp13_S_contig1266:86..6030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score176.8
Seed ortholog evalue2.3e-41
Seed eggNOG ortholog1158318.ATXC01000001_gene1026
Preferred namepolA
Model size1368
KEGG rclassRC02795
KEGG koko:K01146,ko:K02335,ko:K03469
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categorysignal peptide
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004536,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006308,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0022616,GO:0030312,GO:0030955,GO:0031420,GO:0033554,GO:0033567,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048256,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576
Exons9
EggNOG free text desc.5'-3' exonuclease
EggNOG OGs2G3XK@200783,COG0258@1,COG0258@2,COG0749@1,COG0749@2
EC2.7.7.7,3.1.26.4
Cds size1368
COG Functional cat.L
Best tax levelAquificae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1266.2201.1prot_Ecto-sp13_S_contig1266.2201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1266 86..6030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.0423708-CDS-Ecto-sp13_S_contig1266:85..2471681462676.0423708-CDS-Ecto-sp13_S_contig1266:85..247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 86..247 -
1681462676.0524464-CDS-Ecto-sp13_S_contig1266:1002..10631681462676.0524464-CDS-Ecto-sp13_S_contig1266:1002..1063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 1003..1063 -
1681462676.0603821-CDS-Ecto-sp13_S_contig1266:1663..17991681462676.0603821-CDS-Ecto-sp13_S_contig1266:1663..1799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 1664..1799 -
1681462676.0683851-CDS-Ecto-sp13_S_contig1266:2338..24511681462676.0683851-CDS-Ecto-sp13_S_contig1266:2338..2451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 2339..2451 -
1681462676.0764844-CDS-Ecto-sp13_S_contig1266:3243..33421681462676.0764844-CDS-Ecto-sp13_S_contig1266:3243..3342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 3244..3342 -
1681462676.0846999-CDS-Ecto-sp13_S_contig1266:3686..38141681462676.0846999-CDS-Ecto-sp13_S_contig1266:3686..3814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 3687..3814 -
1681462676.0927713-CDS-Ecto-sp13_S_contig1266:4140..42601681462676.0927713-CDS-Ecto-sp13_S_contig1266:4140..4260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 4141..4260 -
1681462676.1008558-CDS-Ecto-sp13_S_contig1266:4999..50781681462676.1008558-CDS-Ecto-sp13_S_contig1266:4999..5078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 5000..5078 -
1681462676.108963-CDS-Ecto-sp13_S_contig1266:5560..60301681462676.108963-CDS-Ecto-sp13_S_contig1266:5560..6030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1266 5561..6030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1266.2201.1

>prot_Ecto-sp13_S_contig1266.2201.1 ID=prot_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=456bp
MRRGNRGAVRAPLFALSLALHANLTSSLLHNLGDAISRNHATTTAAAAGT
AAGRRRRARPRPVWHFHGNISSPGRGQSSRSPRCSVRSGPEVAAAAAADV
ENGGPDVAGAEGHSVEARPAIADPPPLTHDQLPEESLYLLDGTSMLFRAF
YGRGAGGYMASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETT
FRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFDMEGYEADDVM
ATLARQDARAEAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRD
GYTILGSEEVLAKFGVKPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLL
EKFETLEGVFAGLDGVGSMEIRGSKALQTLLSQPGIQEEAMLYREIATLD
DEVPLDGIDAITSSTFLYRGASPEAEGVMSALGFQAPLRMIQEGSKRPSA
RASTV*
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mRNA from alignment at Ecto-sp13_S_contig1266:86..6030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1266.2201.1 ID=mRNA_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1266:86..6030- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCGAGGAAATCGAGGAGCCGTGCGTGCTCCCCTCTTTGCGCTCTC GCTAGCTCTGCATGCCAATCTTACCTCGTCATTGTTACACAACCTAGGAG ATGCGATTTCAAGGAATCACGCAACGACGACCGCAGCTGCTGCAGGAACG GCGGCAGGAAGAAGAAGGAGAGCACGGCCACGGCCTGTGTGGCACTTCCA CGGCAACATTTCTTCACCAGGGCGTGGACAATCCAGTAGATCTCCAAGAT GCAGCGTCAGAAGCGGTCCGGAGGTAGCAGCTGCAGCAGCGGCTGACGTC GAAAATGGAGGGCCGGATGTTGCGGGTGCCGAGGGCCACAGCGTAGAAGC GCGTCCTGCGATAGCGGACCCCCCACCTCTGACCCACGACCAGCTTCCCG AGGAGAGCCTTTATCTGCTTGATGGGACCTCGATGCTGTTCAGGGCGTTC TATGGCCGCGGAGCCGGCGGGTGAGTCCTGCTGGCCAAGTGTAACACTGC GCAGGCGGAGTTTCTCAACGGATGCGTAGTACTTTCAGCGTGTCCCCCTG CACAATTGACTTGCACATGATTGCACATGATATGTATAGAACAAACCATG GTAATGTAGGCCCTTGCTATCACCCGTGGAGACACCGCACTTGTGTGCGC ATGTTTACATTTAATTGTGGGTAAACGACGTGCAATCCGTTGGAGATGGG TTATGTAACATGTGCATACTAAGTAGCGTGTAATCCAGAAGAACGCAGTA TTCTGTGGTATTACCCATCAAAGACAGCAGTAGCGGTGGCAGGACAACCG CCGTACTGCACCTCAAATTCCTCTGTTCCTTCGGGAGATCGTCACCCTCA GTTTTTTCCTCCTGTATGGTTGTGCATCTCCGACTCATGCGCTTCGCTGC TCTCCCCTGTGCACTCGCTGGCGACATGCATGTATCCCCTCCCTTCTGAC AGGTACATGGCCTCCAACGGCGCAACGGAGGTAGGCGCCGTGCTTGCCAT GGGGATAGAGTTCGCACAGTTCATCAATGAGGTGAGCACAGTTCTTGTGC TGTTGTGTGCATAGCTCCGTTGAGCCTCCAATTGCCCTCGCCGAACTTGA GGTGGCTACATGAGTGGATAAACGCATGGGTTTACTTACGGTAATGCGCA CCGCGGAAAAGGCGACAGCAGCAGTTTCCACTGCTGTGCGCAAAGTGGGG CATGTGTGAACTACAATTGCTATTGATTGATGCGCTGTAAATCGAGGAAA TTAGAATCGCGTCTGGCCGGGTGTTTGGAGGATCCCCTCACTATGCTTGG CGATGTTGCGCGCAGCGTGTGGCATGTAGTGCTTCGTGTATGGAACCCTC GTCTCCTGAGAGAGTGGTGGTCCACACTGGTTGGTGACTAAACCGATCAG CAGAGGTTGTGGAGCTTCCTTCCTTGCTGTGCGGCGAGGAATGCCAAGTT GGACCGAACGAGCTCAGTCGAACTAGGGTGAGGGAGGTTGGACGCAGCCT TCGTGGACTCGTATCTCCCAACCTGGGGAGGATGCGTCATGAACTGCGAA CAGTTACGCATGGTTCGCGGAATGGGTATTTATCTGCACCGATCCCAGAA TCCGCCGCTCCTCCTACTCATCTCTGCCAGTGCGAGATTCGGTCTCCTCG CTTTTGTCGCTGTCCTCTTCATCAACGGGTTCGTCACTAGTCCTGATCTC AGTGCCGCTGCTGCCCGTTATGTCGGACCACCTGCGATCACGTGCGCTTC GAATTGCGATGTCGCGCCAGGTAAAGCCACGGTATGTCGCCATGGCCTTC GACGTGGGGCGAGAAACAACATTCCGACGAAAGCTCTACCCGCAGTACAA GGCGCAGAGAAAGCCTGTACCGTTGGACTTGACCTTACAGGTGATAAAAG CTTACATACGCCTTGTTGTGCGCAGAATGCGCTGCTAGAAGAGCGACGCC AGAATACACACCATTGAAAGGTGCGTAGGGGGCAAGTTTGGGAAAAATGC TTGTCCATGCACATTCGCAACGCACCTCATTCCCGCACGGATTGATCGCT TCACCTATATAACAACATTTGGGTCTACGATCTTGCGGTTTTCTCGAAAA AGCTCTAGCGTTCCTTCCTTGATGGTACGAGATACCGTTGACGTTCACGC AGCCACACCGACGTCCGTCAACGACAACACGGCGCGCCTCGCCCTTCCCT CACGTCGCCCTCGCAGATTCCGCTCGCGAAGGCGCTTTCGGAGGCCCTGG GGTGCCGCACGTTCGACATGGAGGGCTACGAGGCCGACGACGTCATGGCC ACGCTCGCCAGGCAAGACGCACGGGCGGAGGCTTGGCTTGGTTGGTTCCA TGACGAGATGGGACGGATGTATTTGTTTGATCGGTTGAGTAGTTGCAAGT TCGGTTCGGTCTCGGCGATCAAGGCTTTGTTTTTTCTTGCTGGGTTTGGA AGGTGTGGATGCTTTGTGTGGTCGGGTGTTTTACTACGCGCACTTGCCGT TGATCGGTCGCTGCTGCTGCCGCTGCTGCCGCTGCTGCTGCTGCTGCTGC TGTGACTATCGTTTCTTTTTTTGCCGGACGAGAGCCGGAGGTTGATCCTA AGATGCCCGCACACAACAAGTGTCGGAATGCGCCTCACGTTGTGTTTTTG CATGGCTGCGTTGTTGTTGGGCGTCGCGCATTCTCCAGGTGGGGGCGCTC AGTGGGACTGGGAGTGGTGGTGTGTTCCTCTGACAAAGATATGTGCCAGC TTGTCAGAGATCGTGTCCACGTCATGCAACCAAGGAGGTGAGGTGCCGAG GCAGGATTTAATCAATGGTGGTGATGCTTGAGTTGAGGAGTAAGGTATTC CTGCAACGGTCTAGTGCTACCACTGTCATATTCGCGTGCGATGGTGCAGT TTTGAGCTGTGGGGAGCAGCAGCAGCACAGAGCGTCCTTCGCTTGTGCTG ACGGAATATCAACATTTTTTTGTTTCAACTCCTTATTTACCCTGTTGGGG ACTGAGCACTGACTCTGTCAAGCCAATAGCAGCATGCCTCTCAACCGGAA AGGGACCTTCAGGCAATTGATATGTGTTTTTCTCTCTCATGTTCTTACCC GTGGTCGTATCACCTGCATATGTCTACCCATGGCGAAGAGTAACCTCTAG CGGAAAGTGGCCGCTACATTTTCGTAAGAATTCATTCACGGGTAGACACG TTGTCGACGACTTGCCGACAGTTCCAGGCCCAGGCTACGAGGACCTACGC TTGATCCCTCACAAATCGCCACTATCGGCGACAGGACCTCCTACCGACAA CTCGTTGCCTTTCCCAGTAGAAGCAGGCGCCTCCCACAAAACTTGAGGCC CTTCGAGAATCGGTGCGAATGTGTTTGCAGGCCGGGTGATTTTTCAGATT TTCTCGAAACCTTTGAACGCAGGCAGGAGTGACGCGACGTTGTCCGGTAT TAAGTGTAGATTTTGTGCGTCTGTATTAATGACCGCTCGGAGTGTAATTC CGACCCCCTTTGCTCTTTGGCTCGTCAAAACTTGCGCTTTTTGCACAACC GTTAAGCCCTTAGTCTGTGGTCTTGCCAGGGACGGATACACCATTCTGGG CAGCGAGGAGGTCTTGGCAAAGTTCGGGGTAAAGCCGTCAGCACTCCCCG ACCTGTTCGGCCTGATCGGTGATGTGGCCGACAACATCCCTGGTGCGACG GCGGTAGCCATGTTGTTGGACGTTATTTGCGCGGGTTGCCGTTCAGTTAG CTTATCGGAGAATACCTTGACGTGAGCGGAAGTGTTGCGCAGTTGCTCTC GCAGAAACAAACACGCGTTGGTGATCGGAAATTGCGTCGCGTCCTATGTC GAGCTCTGTCTGATGGAGTGTCGTGGACAACAGCAGTTGGTTGGCGACAT GTTGTCGAACTTTACAGCGGGTGGAACTACGGTTTGTAAGGTGCATACGA TTACTGCTGCGTGGTTTCTAGATGCGATTTATTGTCCGGACTGCGAAGTG GCGTGGACATTTGTTGGAATTGAAATATATGAACGCTTTGAGCATTTACG TACCTCTGTATCAAACCCCACAGTGAGAATGAAATACTTCGGCGACATGT TTCCGAAATGGAGGAGGAAAACACAGTTCAGAGAACCAATGTGCGTGGTT AGTGGACGCTCAACTCCGTCTGTTATACTTGGAAGCAAGGTTCATTATTT CTACCGATGTTGCCTTGTTACCCCGAGGCAGGTGTGAAGGGCATCGGGCC AAAGGGCGGGTCTCGACTGCTGGAAAAGTTCGAGACCCTTGAAGGCGTGT TTGCGGGCTTGGATGGCGTCGGCAGCATGGAGATCCGGGGCTCCAAGGCG TTGCAGACTTTGCTGAGGTATATCGCTGCGTCGTTGCAGATCGGAAATGG TATTCTTCTGCAGCGCTGGATTTGGTATGAGAGCGACGGGACGAGCTGCA GCAGGCAGCACCCACAACACTCGTCGTACGAATTCCCTTTTCTAGCCGTC CAAAGTTTTCGTTTTATGAGAGCTAATTTCTAACAGTCTGTTTGTTCACG ATTGAGTTTTTTTACGGATCTCGCTATGGAAATGTTTCTTGCTCTCAACA AAGGAGATCTGCTTCCCACGGACTCGTGAACAGCCCTATCCTAACCTAAA ACTATCCAGGAATCCTCACGGGGCAGCCTGCTGTTGTAGGTTTGGACATT CACTTCGTGACCCAGATTTACGTTTTGCAACGCGCGCCTGGATTGGTACC CTAGACGGCTACTAGAACTACTTTTGCCAGTCGAACGGCCTCTTTTATGA GGGTGTCATGGATAACGTTTGGTCCCCTTTGCGCACCACTTGATCCTTCG CTCTTACCCATAGCCTCCCATTCCGCCCCTCGTCCGCTCCCTCCTCGCCT TGTTTTTTGCTTGTGGACTTTGGGTCGCCTCCCCGTGGTTGTTGCATTGG TCTTGTTGGTTCCCCAGTCAACCCGGTATCCAAGAAGAGGCGATGCTGTA CCGGGAAATCGCCACGCTGGACGATGAGGTGCGATTGGTCTGATGACGAT CTGTATCACAGTCACATGTCACCGTTTGTCCAAAGTAACACGGAAAAGGT TGAGGTCGGCGGAGTGTCTATGACACAGGGGTTCGTTGCGATTGTAAGCG GAACAGTGTTGTTTACTGGCCGATGCCGCCGTTCTTGCCGCGAACACTAC TTGTGATGGTGTCGCACGGCCGTCCACCTAACAACGCAACCTTTGTCACC TCACGAGATCGGCTGCTGCTTGTGGCCATGGCAAGCTTGGCTTCTTTCTG ACCTTCGCCAGATCACACACAGAACGATTTCACAAAAGATGACTGCCGAA ATTTTCAATTCAAGACTTGCCCTGATATTTGTGGTCGTGTGCGCTCAAAA CTTGAAGACTCCGGCAATTTTGGCATTCCTGCGGAAGATACTAGTTTTAC CGCACGCCACTGGCCGCAATTTGGCTCTGGCTGATCTGTTAGAAAGAAAA AATAAACTCACTTAAAGACAACCCGTTCGAGACGTAACCCCAGTCGAAAG GGATGTGGTGAAGTTTCTTCCTGTGAGTGGAGGGGAACCGTTAGCTGAGC TTTTTTTGTGCTGACGCAAGCTGTCGACCAGCCACGCATGGAAGCGAGAA CAAGTGAAAGACCGTTCGTTTTGGTGTGCCAACTATACACGGGACGAAGC GCCGTCTTTTCGCACACCTGCTATCGTTGTGCTTATCATCTTACGCCTGC TTCGATCTGACGTCCGCGCCCCCGACCCCTCAGGTACCGTTGGATGGTAT CGACGCTATAACGTCGTCGACCTTCCTCTACAGGGGAGCGTCTCCTGAAG CTGAGGGGGTCATGTCGGCCCTGGGGTTCCAAGCGCCGCTAAGAATGATC CAAGAGGGTTCCAAGCGACCCTCCGCACGGGCTTCGACAGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1266:86..6030-

>mRNA_Ecto-sp13_S_contig1266.2201.1 ID=mRNA_Ecto-sp13_S_contig1266.2201.1|Name=mRNA_Ecto-sp13_S_contig1266.2201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1368bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1266:86..6030- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGCGAGGAAATCGAGGAGCCGTGCGTGCTCCCCTCTTTGCGCTCTC
GCTAGCTCTGCATGCCAATCTTACCTCGTCATTGTTACACAACCTAGGAG
ATGCGATTTCAAGGAATCACGCAACGACGACCGCAGCTGCTGCAGGAACG
GCGGCAGGAAGAAGAAGGAGAGCACGGCCACGGCCTGTGTGGCACTTCCA
CGGCAACATTTCTTCACCAGGGCGTGGACAATCCAGTAGATCTCCAAGAT
GCAGCGTCAGAAGCGGTCCGGAGGTAGCAGCTGCAGCAGCGGCTGACGTC
GAAAATGGAGGGCCGGATGTTGCGGGTGCCGAGGGCCACAGCGTAGAAGC
GCGTCCTGCGATAGCGGACCCCCCACCTCTGACCCACGACCAGCTTCCCG
AGGAGAGCCTTTATCTGCTTGATGGGACCTCGATGCTGTTCAGGGCGTTC
TATGGCCGCGGAGCCGGCGGGTACATGGCCTCCAACGGCGCAACGGAGGT
AGGCGCCGTGCTTGCCATGGGGATAGAGTTCGCACAGTTCATCAATGAGG
TAAAGCCACGGTATGTCGCCATGGCCTTCGACGTGGGGCGAGAAACAACA
TTCCGACGAAAGCTCTACCCGCAGTACAAGGCGCAGAGAAAGCCTGTACC
GTTGGACTTGACCTTACAGATTCCGCTCGCGAAGGCGCTTTCGGAGGCCC
TGGGGTGCCGCACGTTCGACATGGAGGGCTACGAGGCCGACGACGTCATG
GCCACGCTCGCCAGGCAAGACGCACGGGCGGAGGCTTGGCTTGGTTGGTG
GGGGCGCTCAGTGGGACTGGGAGTGGTGGTGTGTTCCTCTGACAAAGATA
TGTGCCAGCTTGTCAGAGATCGTGTCCACGTCATGCAACCAAGGAGGGAC
GGATACACCATTCTGGGCAGCGAGGAGGTCTTGGCAAAGTTCGGGGTAAA
GCCGTCAGCACTCCCCGACCTGTTCGGCCTGATCGGTGATGTGGCCGACA
ACATCCCTGGTGTGAAGGGCATCGGGCCAAAGGGCGGGTCTCGACTGCTG
GAAAAGTTCGAGACCCTTGAAGGCGTGTTTGCGGGCTTGGATGGCGTCGG
CAGCATGGAGATCCGGGGCTCCAAGGCGTTGCAGACTTTGCTGAGTCAAC
CCGGTATCCAAGAAGAGGCGATGCTGTACCGGGAAATCGCCACGCTGGAC
GATGAGGTACCGTTGGATGGTATCGACGCTATAACGTCGTCGACCTTCCT
CTACAGGGGAGCGTCTCCTGAAGCTGAGGGGGTCATGTCGGCCCTGGGGT
TCCAAGCGCCGCTAAGAATGATCCAAGAGGGTTCCAAGCGACCCTCCGCA
CGGGCTTCGACAGTTTGA
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