mRNA_Ecto-sp13_S_contig8530.19932.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8530.19932.1
Unique NamemRNA_Ecto-sp13_S_contig8530.19932.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 8.510e-21
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1
Query:    4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDA-SLNPGERRSTRVPRLRARAVTWSLEGIEG----VIRPPSLQRLTFGRYFDHAVEQV 360
            GPT+S CL    VALN+   G  WY +STKELQLAS   C  CR   TL LTVDA TPRRLLAA DA S +P     TRVPRLRAR  TW++    G    +     +  L FG+ F  +++ +
Sbjct:  130 GPTRSSCLKTLTVALNETCDGKSWY-TSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAI 252          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.990e-20
Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 AGPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSLEGIEG----VIRPPSLQRLTFGRYFDHAVEQVS 363
            +GP +  CL+A IVALN+   G  WY +STKE QLAS  FC  CR+  TL L VD+ TPRRLLAA DA   +P     TRVPRLRAR VTW +    G    +        L F R F+ ++E V+
Sbjct:    5 SGPARDSCLNAIIVALNETSDGKSWY-TSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVA 129          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.020e-19
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSL 276
            GP++S CL+A ++ALN+   G  WY +STKELQLAS  FC  CR+  TL L VDA+ PRRLLA  DA   +P     TRVPRLRAR VTW +
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWY-TSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGM 197          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.880e-18
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSLEGIEGVIRP----PSLQRLTFGRYFDHAVEQVS 363
            G T + CLS+ IVALN+   G  WY +STKELQ AS  FC  CR+   + L VD + PR LLAA DA   +P     TRVPRLRAR+VTW++     +  P      +  L FG  FD ++E V+
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWY-TSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVT 131          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 7.850e-18
Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRSTR-VPRLRARAVTWSLEGIEGVIRPP-----SLQRLTFGRYFDHAVEQVS 363
            GPT + CL+A  VAL +   G  WY +STKELQLAS  FC  CR+  TL L VD   PR LLAA D      +R S R VPRLRAR VTW++      +R P      L  L FG  F+ ++E V+
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWY-TSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMP-TAAELRSPIFALMDLDHLDFGSAFEGSLEAVT 153          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.770e-13
Identity = 49/94 (52.13%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 AGPTQSRCLSAFIVALNQIYG--GNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRSTRVPRLRARAVTWSL 276
            A PT SR L   IV LNQ  G  G + + +STKELQLAS   C  CR    L L V+  TP RLLA  D S + G    TRVPRLRAR V+W L
Sbjct:   22 AAPTNSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPAD-SPSDGSEEGTRVPRLRAREVSWDL 114          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.310e-13
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   64 GNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRS--TRVPRLRARAVTWSLEGIEGVIRP----PSLQRLTFGRYFDHAVEQVS 363
            G +WY +STKELQ AS  FC  CR   TLRL VD +TPR LLAA DA  +P  +R   TRVPRLRAR V W++     +  P      + RL FG  F+ ++E V+
Sbjct:    4 GKRWY-TSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAP-SPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVA 107          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JEK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.560e-10
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 AGPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLN-PGERRSTRVPRLRARAVTWSLEGIEGVIRPPSLQRLTFGRYFDHAVEQ 357
            AGP  +RCL AFIVALNQ +GG +W C+S   LQLAS  FC  CR+V +  +TVD  TP RL +   A+L+  G+      P              +G++   SL+R+TFG  F+  +++
Sbjct:    6 AGP--NRCLDAFIVALNQSWGGKKW-CTSVATLQLASLPFCVACRNVPSPCVTVDTGTPPRLWSG--AALDGDGQEPCITAPE-------------DGIVLSSSLRRITFGGDFNQRMDK 107          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.950e-10
Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   37 IVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAA--NDAS---------LNPGERRSTRVPRLRARAVTWSLEGIEGVIRPPSL 312
            +VALN+ YGG QWY S T +LQLAS  FC  CRSV TL LTV+  TPR L A   +D S            G     RVP  R R VTW+L        PPS+
Sbjct:    1 MVALNETYGGKQWYIS-TVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNL--------PPSM 94          
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.670e-8
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   13 QSRCLSAFIVALNQIYGGNQ--WYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRL 186
            +S+CL AF+VALNQ   G +  WY +ST ELQL S  FC  CR V TL + VD  TPR L
Sbjct:   38 RSKCLDAFVVALNQTCDGQEKRWY-ASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSL 96          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE8.510e-2148.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE4.990e-2047.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI3.020e-1956.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH81_ECTSI1.880e-1845.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ4_9PHAE7.850e-1846.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U4_9PHAE1.770e-1352.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE2.310e-1348.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK4_9PHAE1.560e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG83_9PHAE3.950e-1046.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0Z9_ECTSI3.670e-855.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8530contigEcto-sp13_S_contig8530:1420..2840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categoryother localisation
Exons2
Cds size573
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.5238478-UTR-Ecto-sp13_S_contig8530:1419..15601681464123.5238478-UTR-Ecto-sp13_S_contig8530:1419..1560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8530 1420..1560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.5340946-CDS-Ecto-sp13_S_contig8530:1560..16971681464123.5340946-CDS-Ecto-sp13_S_contig8530:1560..1697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8530 1561..1697 +
1681464123.5437794-CDS-Ecto-sp13_S_contig8530:2404..28401681464123.5437794-CDS-Ecto-sp13_S_contig8530:2404..2840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8530 2405..2840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8530.19932.1prot_Ecto-sp13_S_contig8530.19932.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8530 1561..2840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8530.19932.1

>prot_Ecto-sp13_S_contig8530.19932.1 ID=prot_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MTLRLTVDAETPRRLLAANDASLNPGERRSTRVPRLRARAVTWSLEGIEG
VIRPPSLQRLTFGRYFDHAVEQVSWPACLQHLKFGHAFNRPVEGVSWPPS
LHRLIFGRSFNKAIDRIAWPASLQHLAFLGWPGWQPSVFNQPIEGVLWPA
SLQHLSLGSSFHQPVEGVLWPPSLQQLFFGSLFNQAIDRIA
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mRNA from alignment at Ecto-sp13_S_contig8530:1420..2840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8530.19932.1 ID=mRNA_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8530:1420..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTCCCACTCAAAGCCGGTGCCTGAGTGCGTTCATCGTGGCCCTCAA CCAGATCTACGGCGGAAATCAGTGGTACTGCTCGTCGACGAAGGAGCTTC AGCTGGCTTCGACTTAGTTCTGCGCGGTATGCCGAAGCGTTATGACCCTA CGGTTGACAGTCGATGCCGAAACGCCGAGGCGGCTCTTGGCTGCCAACGA TGCTTCCCTCAATCCTGGCGAGCGCCGCTCGACACGCGTGCCACGGCTCA GAGCGCGTGCTGTGACGTGGAGCTTGGAGTCGGCTACGCCGTTGGCAGCC CCAATCTATGCTTCGACCAACGTGGAGTCGATTTCTTTCGATGCGTGTTT CAACGACAGCCTGGACGCTGTGGTATGACCGGTCTCCCTCAATGCCATTG TAATCAGGGAGGGGCAGTTTGACAAGAGTATAGACAATGTGGCTTGGCCG AAGTCGCTGCAGCACCTTGATTTGGGAGTGCGTGTCAACCGGTCATTTAG AGGTTTCCTGGCCGGTGTCGCTGCAGCGACTGATTTCGCGGGGTTTCATG GCCAGCATCGCTCCAATACCTCGAACTCGGAGACCGCTTTGATCAGCGTA TCAACGGAATACGGTGGCCGTCATCTCTGCAGGTACTCAAGTTCGGGGCC GCGTTTGATCGCGGAATTGCTTTCGTGGTGTGGCCGGCATCTCTGCACCA GCTTGAGTTTGGGCGCGAATTTTGCCGCGATTTTTCACAACTTCAGTGAC CGCCATCTCTGCAGCGGTTGGCATTCGGTGGCATCCTCCACGTCAGTGCG ATTGTTTGGCCGGCGTCCCTGCAACAGCTGGATTTGGGGTGCAGCTTCAA CAGCACAATCCGAGGGCTGGTATGGCCCGCCTCCCTGACGCAACTCTCAC TCTGGCGTAAATTCAATCAGGACGTCTCAGGAGCGACGTGGTCGGCATCT CTGAAACAGCTAGAATTCGGACATGATGTCGACAGGGGTATCGAAGGGGT CATACGGCCGCCATCTCTGCAGCGGTTGACCTTTGGAAGGTACTTCGACC ACGCAGTTGAGCAGGTCTCGTGGCCGGCATGCCTTCAACACCTTAAATTC GGTCATGCTTTCAACCGGCCGGTAGAGGGGGTGTCGTGGCCGCCATCTCT GCATCGGTTGATCTTTGGAAGGTCCTTCAACAAGGCCATCGACAGGATCG CTTGGCCGGCATCGCTGCAGCACTTGGCCTTCTTGGGTTGGCCAGGTTGG CAGCCTTCCGTATTCAACCAGCCAATTGAGGGTGTTTTGTGGCCAGCGTC ACTGCAGCACCTCTCCCTTGGGTCTTCCTTCCACCAGCCGGTTGAGGGGG TCTTGTGGCCGCCATCTCTACAACAATTATTCTTTGGAAGTTTGTTTAAC CAGGCCATCGACAGGATCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8530:1420..2840+

>mRNA_Ecto-sp13_S_contig8530.19932.1 ID=mRNA_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8530:1420..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTACGGTTGACAGTCGATGCCGAAACGCCGAGGCGGCTCTTGGC
TGCCAACGATGCTTCCCTCAATCCTGGCGAGCGCCGCTCGACACGCGTGC
CACGGCTCAGAGCGCGTGCTGTGACGTGGAGCTTGGAGGGTATCGAAGGG
GTCATACGGCCGCCATCTCTGCAGCGGTTGACCTTTGGAAGGTACTTCGA
CCACGCAGTTGAGCAGGTCTCGTGGCCGGCATGCCTTCAACACCTTAAAT
TCGGTCATGCTTTCAACCGGCCGGTAGAGGGGGTGTCGTGGCCGCCATCT
CTGCATCGGTTGATCTTTGGAAGGTCCTTCAACAAGGCCATCGACAGGAT
CGCTTGGCCGGCATCGCTGCAGCACTTGGCCTTCTTGGGTTGGCCAGGTT
GGCAGCCTTCCGTATTCAACCAGCCAATTGAGGGTGTTTTGTGGCCAGCG
TCACTGCAGCACCTCTCCCTTGGGTCTTCCTTCCACCAGCCGGTTGAGGG
GGTCTTGTGGCCGCCATCTCTACAACAATTATTCTTTGGAAGTTTGTTTA
ACCAGGCCATCGACAGGATCGCT
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