mRNA_Ecto-sp13_S_contig8530.19932.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 100 bits (250), Expect = 8.510e-21 Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1
Query: 4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDA-SLNPGERRSTRVPRLRARAVTWSLEGIEG----VIRPPSLQRLTFGRYFDHAVEQV 360
GPT+S CL VALN+ G WY +STKELQLAS C CR TL LTVDA TPRRLLAA DA S +P TRVPRLRAR TW++ G + + L FG+ F +++ +
Sbjct: 130 GPTRSSCLKTLTVALNETCDGKSWY-TSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAI 252
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.990e-20 Identity = 60/126 (47.62%), Postives = 74/126 (58.73%), Query Frame = 1
Query: 1 AGPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSLEGIEG----VIRPPSLQRLTFGRYFDHAVEQVS 363
+GP + CL+A IVALN+ G WY +STKE QLAS FC CR+ TL L VD+ TPRRLLAA DA +P TRVPRLRAR VTW + G + L F R F+ ++E V+
Sbjct: 5 SGPARDSCLNAIIVALNETSDGKSWY-TSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVA 129
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.020e-19 Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSL 276
GP++S CL+A ++ALN+ G WY +STKELQLAS FC CR+ TL L VDA+ PRRLLA DA +P TRVPRLRAR VTW +
Sbjct: 107 GPSRSSCLNALVIALNETCNGESWY-TSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGM 197
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 1.880e-18 Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASL-NPGERRSTRVPRLRARAVTWSLEGIEGVIRP----PSLQRLTFGRYFDHAVEQVS 363
G T + CLS+ IVALN+ G WY +STKELQ AS FC CR+ + L VD + PR LLAA DA +P TRVPRLRAR+VTW++ + P + L FG FD ++E V+
Sbjct: 8 GLTHNPCLSSLIVALNETCDGTSWY-TSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVT 131
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 7.850e-18 Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = 1
Query: 4 GPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRSTR-VPRLRARAVTWSLEGIEGVIRPP-----SLQRLTFGRYFDHAVEQVS 363
GPT + CL+A VAL + G WY +STKELQLAS FC CR+ TL L VD PR LLAA D +R S R VPRLRAR VTW++ +R P L L FG F+ ++E V+
Sbjct: 30 GPTSNTCLNAIYVALGETRDGKSWY-TSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMP-TAAELRSPIFALMDLDHLDFGSAFEGSLEAVT 153
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.770e-13 Identity = 49/94 (52.13%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 AGPTQSRCLSAFIVALNQIYG--GNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRSTRVPRLRARAVTWSL 276
A PT SR L IV LNQ G G + + +STKELQLAS C CR L L V+ TP RLLA D S + G TRVPRLRAR V+W L
Sbjct: 22 AAPTNSRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPAD-SPSDGSEEGTRVPRLRAREVSWDL 114
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 2.310e-13 Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 64 GNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLNPGERRS--TRVPRLRARAVTWSLEGIEGVIRP----PSLQRLTFGRYFDHAVEQVS 363
G +WY +STKELQ AS FC CR TLRL VD +TPR LLAA DA +P +R TRVPRLRAR V W++ + P + RL FG F+ ++E V+
Sbjct: 4 GKRWY-TSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAP-SPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVA 107
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JEK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK4_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 1.560e-10 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 1 AGPTQSRCLSAFIVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAANDASLN-PGERRSTRVPRLRARAVTWSLEGIEGVIRPPSLQRLTFGRYFDHAVEQ 357
AGP +RCL AFIVALNQ +GG +W C+S LQLAS FC CR+V + +TVD TP RL + A+L+ G+ P +G++ SL+R+TFG F+ +++
Sbjct: 6 AGP--NRCLDAFIVALNQSWGGKKW-CTSVATLQLASLPFCVACRNVPSPCVTVDTGTPPRLWSG--AALDGDGQEPCITAPE-------------DGIVLSSSLRRITFGGDFNQRMDK 107
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 3.950e-10 Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 1
Query: 37 IVALNQIYGGNQWYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRLLAA--NDAS---------LNPGERRSTRVPRLRARAVTWSLEGIEGVIRPPSL 312
+VALN+ YGG QWY S T +LQLAS FC CRSV TL LTV+ TPR L A +D S G RVP R R VTW+L PPS+
Sbjct: 1 MVALNETYGGKQWYIS-TVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNL--------PPSM 94
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 3.670e-8 Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 13 QSRCLSAFIVALNQIYGGNQ--WYCSSTKELQLAST*FCAVCRSVMTLRLTVDAETPRRL 186
+S+CL AF+VALNQ G + WY +ST ELQL S FC CR V TL + VD TPR L
Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWY-ASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSL 96 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8530.19932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8530.19932.1 >prot_Ecto-sp13_S_contig8530.19932.1 ID=prot_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp MTLRLTVDAETPRRLLAANDASLNPGERRSTRVPRLRARAVTWSLEGIEGback to top mRNA from alignment at Ecto-sp13_S_contig8530:1420..2840+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8530.19932.1 ID=mRNA_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8530:1420..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8530:1420..2840+ >mRNA_Ecto-sp13_S_contig8530.19932.1 ID=mRNA_Ecto-sp13_S_contig8530.19932.1|Name=mRNA_Ecto-sp13_S_contig8530.19932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8530:1420..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |