mRNA_Ecto-sp13_S_contig848.19869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE) HSP 1 Score: 943 bits (2438), Expect = 0.000e+0 Identity = 500/531 (94.16%), Postives = 513/531 (96.61%), Query Frame = 1
Query: 1 MARAGVVLLLAGLAWPHDTLPFALGARNTPPYGRCRRRRETRSTSSFIPSATATASHVGNRAAWGLLRSKTTARVRPRARRCSMYSETIRDSPDGERMRSAEVEHQSSLNRTPPPVRRGHGTGLAAGGVGSMKADTIGGLALPLDVGRASRITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDASLLHHWVEELDEFREGEMAFMDRMRSVVESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSDLWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR 1593
MARAGVVL+LAGLAWPHDTLPFALGARNTPPYGRCRRRRET S SSF+PSATATA HVGNRAAWGLLRSK ARVRPRARRCSMYSE IRDSPDGERMRSAE EHQSSLNRTPPP RRG+G GLAAG VGSM+ DTIGGLALPLD+GRASRITRVEVDNLAMV+N+SIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPL+DGGRRLRV RTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGR+RALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGP GSADDASLLHHWVEELDEFREGEMAFMDRMRS+VE FVDDWGED+LGPLAEPFLSGTLLSD+DAEE RGG EGLSDLWPRLSRV EGMEDLEASRTKVELARQLAVEQSNP+SIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR
Sbjct: 1 MARAGVVLVLAGLAWPHDTLPFALGARNTPPYGRCRRRRETSSMSSFVPSATATALHVGNRAAWGLLRSKIRARVRPRARRCSMYSERIRDSPDGERMRSAESEHQSSLNRTPPPARRGYGNGLAAGSVGSMRVDTIGGLALPLDLGRASRITRVEVDNLAMVENVSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLEDGGRRLRVYRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRMRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPGGSADDASLLHHWVEELDEFREGEMAFMDRMRSIVERFVDDWGEDILGPLAEPFLSGTLLSDKDAEEGLRGGVEGLSDLWPRLSRVREGMEDLEASRTKVELARQLAVEQSNPDSIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR 531
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A398CC32_9BACL (DNA repair protein RecN n=1 Tax=Cohnella faecalis TaxID=2315694 RepID=A0A398CC32_9BACL) HSP 1 Score: 76.6 bits (187), Expect = 4.400e-11 Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1
Query: 454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKG-SSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDR 909
+ + + NLA+++N+S+ RG +TGETGTGKS++ A +LAAG R AD++ + A ++ +L+ GH EVLER G+ D L V R + +G SSA +NG +V L LRE+ L+ + + R D L LD+
Sbjct: 2 LRELSIRNLAVIENVSVSFHRGFHVLTGETGTGKSIVIDALALAAGGR-GSADMIRHGEAKADIEAVFDLSAGH--PVWEVLERLGIEADSE-ESLLVRRELISQGKSSARINGQNVTLSMLREVGEHLVNIHGQHEHQSLLRTDRHLEWLDQ 150
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: B8C1M4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1M4_THAPS) HSP 1 Score: 76.6 bits (187), Expect = 5.890e-11 Identity = 113/431 (26.22%), Postives = 182/431 (42.23%), Query Frame = 1
Query: 442 RASRITRVEVDNLAMVDN------LSIKLGRG---LVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEV------LERFGVP----LDDGG---RRLRVNRTV-----GGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFEL-FSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGP---EGSA-------DDASLLHHWVEELDEFREGEMAFMDRMRSVV-ESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSD--LWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLN----SLDDLVKSV---GEKLERSVESLPVLPITLEEVEERTVKW 1590
R+S+I ++ N+A + N + + G +AVTGE+G+GKSL+ S + DLV G A L L EG + V LERFG+ +D +L + RT+ G S +NG + L +LR + +PL VD A +R RL +D E +L + K+A +R RL+ P +GS D LL HWV+EL++F F D + E +D + E SG L + ++ ++ + GG D L+ + E ++ +E+ A + S+PES A A+ K+R LL +N G D +E TH+ LN SL++ +S+ + ++E + I++EE++ W
Sbjct: 92 RSSQIVSIKSTNIAGLTNSQGTSDIEVNFGSNGACFIAVTGESGSGKSLLVS----------KAVDLV--TGGKAVATLVPTLGEGGEDERSSVEMISSSLERFGIDPTILSNDQSTMTNQLHLQRTLQWSDTGRLKSICRINGKHISLKSLRHIAAPLFTRVDVGAAATALARPASRLAMIDM---GVEDSLKQNCLEMRESYKRARKKRMRLKSELESRVLPSSMQGSGYTSTSEEDQTELLGHWVDELEKFETRTNLFRDALLGQYNELMMDQYNEH-----DNKKSSGLLNTLQNFKKTTWGGGNASEDNSLFATILEFREEIKAVESQLASAHAAYESLASLSSPESAAVALEKVRKLLYSISRDNSGPLFDSIETTHDLLNEVESSLNECARSIDGDSNSVISTLEQMICNGISIEEIDNIVADW 502
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A7S2PIS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIS7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.830e-9 Identity = 114/435 (26.21%), Postives = 185/435 (42.53%), Query Frame = 1
Query: 448 SRITRVEVDNLAMVDN------LSIKLGRG--LVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGV-PL-----------DDGGRR--------LRVNRTV--GGKGSSASV---NGCSVKLGALRELMSPLIYTVDAN-AFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCR-------FEGGPEGSA---DDASLLHHWVEELDEFREGEMAFMDRMRSVVESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSD--LWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLN----SLDDLVKSV---GEKLERSVESLPVLPITLEEVEERTVKW 1590
S I V+ N+A + N + I+ G LV VTGE+G+GKSL +S A + G + LV + + ++L + L E H ++ + L+ FG+ PL D G L + RT+ G G S+ N V L LRE+ SPL TVD A +RA RL LD + ++R V K+A RR ++++ +G GS + LL HWV+ELD F A ++R + + + D GP S ++S E GE D + L + E ++ +E+ A + + ES A ++ ++R LL ++ G + +E THE LN SL++ +S+ + ++E+ +++EEV+ W
Sbjct: 82 SHIVSVKSHNIAGIVNDKGNCDIEIEFGSAACLVCVTGESGSGKSLLVSKALDVVTGGKATNT-LVQDQDKESWIELIVRLCEPHLSTVSSTLQHFGIDPLILYHQHTEDTTDVGDHNNEHASVGYLHLQRTLVAGSSGKLKSICRINEKHVSLKTLREIASPLFTTVDVGVASGALARAASRLAMLDIGVEDSLKQQCIQSRDV---FKEATKRRKKIKKELESRILPSSMQGNAYGSELEQEQIELLEHWVDELDMFE----ARVNRFQETIYEQYSELIADGNGP-----GSNNIISTLQKFRECVWGEHNDDDDSILANLLQFREDIKAVESQLIAANAAYEGLASLTATESAAVSLERVRKLLYTISSDDSGPMFEKVERTHELLNIVEESLNECARSIDGGSNSIISTLENARSTGVSMEEVDGLVADW 503
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A6U6F288_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F288_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.200e-9 Identity = 86/267 (32.21%), Postives = 125/267 (46.82%), Query Frame = 1
Query: 448 SRITRVEVDNLAMVDN----LSIKLGR--GLVAVTGETGTGKSL-ISSAFSLAAGARVRGA-----DLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVP---LDDGGR---------RLRVNRTVG--------GKG---------------SSASVNGCSVKLGALRELMSPLIYTVDANAF-ELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQA-EARRARLEQR---CRFEG-GPEGSADDASLLHHWVEELDEF 1089
S I ++ NLA +D+ +++ LG LVAVTGETGTGKSL + A +A G +V + D S A V+++L+L++ H T ++ G+ L++G R RL + RT+ G+G S VNG V L ALR + SPL+ VDA+A S+ RL +D+ + A A +AR Q +Q EA + E + G G E + + LL HWV+ELDEF
Sbjct: 113 SCIVSIKSRNLAGLDHGEGSVAVDLGSCPSLVAVTGETGTGKSLLVHKALEVAMGGKVSQSIVPSLDTTVGNESNATVEVELKLSQPHLDITRIIMAHHGIDPTLLENGRRSSQKNDTLPRLFLKRTISLQMKPHMQGEGLEKGERIKSPKPRLKSRCEVNGQVVTLKALRAIASPLVTLVDASAAASALSKPTSRLAIIDKGVSTRTKAAAWEAREKYRQARQVREALEMKAESKVLPASLPGYGDETTKEALDLLTHWVDELDEF 379
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: C6JIV8_FUSVA (DNA repair protein RecN n=8 Tax=Fusobacterium TaxID=848 RepID=C6JIV8_FUSVA) HSP 1 Score: 69.3 bits (168), Expect = 8.960e-9 Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = 1
Query: 454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDR 909
+ ++++NLA++D L ++ G GL+ +TGETG GKS+I S +L G + D++ S Q E+ + E+ RFG+ +D +R GKG A VN V L +L+++M L+ V ++ ++ + +R LD+
Sbjct: 2 LRELKIENLAIIDELDLEFGNGLIVLTGETGAGKSIILSGINLLIGEKAS-VDMIRSGEDHLLAQGVFEIND---EQAEELSARFGIETEDNEVIVRRYLDTNGKGK-AFVNNIRVSLSSLKDVMGTLVDIVGQHSHQMLLNKNNHIRLLDK 148
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: UPI00188FA580 (DNA repair protein RecN n=1 Tax=Aliidiomarina indica TaxID=2749147 RepID=UPI00188FA580) HSP 1 Score: 69.3 bits (168), Expect = 9.050e-9 Identity = 76/250 (30.40%), Postives = 109/250 (43.60%), Query Frame = 1
Query: 454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDD---GGRRLRVNRTVGGKG-SSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDASLLHHWVEELDEF----REGEMAFMDRMRSVVESFVDDWGEDMLGPL 1179
+T++ + A+VD+L I +G+ A+TGETG GKS+ A SL GAR + +V R ++ E LE + LDD + RT+ +G S A VNG V +G L+EL LI N L + D +++ LD+ A + A RS Q +Q + L+QR E LL + V ELD+F E E D R S + D + LG L
Sbjct: 2 LTQLNIRQFAIVDHLDIDFQKGMTAITGETGAGKSIALDALSLCLGARSE-SHMV--RPGANKAEITASFCVRQLPHVLEWLEEHDLSLDDVQDNEDSCIIRRTISAEGRSKAFVNGALVPVGTLKELGRMLISLHGQNEHHLLMKTDYQMQLLDQFSNHASLLAAT--RSSFQQWRQLIREQRELQQRVEHENARR------QLLEYQVGELDDFAPSAEEYEQLESDHKRLANASTLVDDAQFSLGTL 240
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A1Z5JGS5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGS5_FISSO) HSP 1 Score: 69.3 bits (168), Expect = 1.100e-8 Identity = 113/430 (26.28%), Postives = 184/430 (42.79%), Query Frame = 1
Query: 448 SRITRVEVDNLAMV-----DN-LSIKLGRGLVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAA-----VQLQLELA-EGHRASTAE-VLERFGVPLDDGGRRLRVNRTVGGKG----SSASVNGCSVKLGALRELMSPLIYTVDAN-AFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEG---SADDAS--LLHHWVEELDEFREGEMAFMDRMRSVVESFVD-----------DWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSDLWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDA---EDENVGLSQDLLEGT---HEDLNSLDDLVKSVGEKLE-------RSVESLPV-LPITLEEVEERTVKW 1590
S IT + NLA DN + I G+ A+TGETG+GKSL ++ A + G + A L+G + S A V ++LEL+ GH + A+ L+ V + G L V +G S +N V L AL L+ VDA+ A S+ + RL +D +P + ++A+ Q +QA +R +E+ + P S DD + L++HW+ EL F++ F R+ + +E + DW D G + E F+ D+ L E L A++ AR S+ +S AI K R ++D+ D ++ L + T HE LN++++ + + + +E R++ESL P +LEEV+ + W
Sbjct: 50 SYITSIRSQNLAGAQSSRSDNQIVIDFQSGMTAITGETGSGKSLFVARALEVVTGGKGISAALLGGKNSERAKVEEPVVVELELSLRGHYLNAAKSFLKTIEVDVPSTGLILLRRSLVMQQGRRVKSVCHINNQQVTLKALTAFSRSLVTVVDASTAAAALSKPEARLAIIDSAVSPDLLVEVNEAKR---QYRQARRKREAIERELKKRVLPSSFVQSDDDENVELMNHWIRELGVFQDRVELFRGRVATSIEQMTEVHDAILRFAESDWDNDDEGAMYESFMD-------------------FRDMIVSLD------EQLVAAQN----ARDALAALSSDQSAITAIEKTRSFIMDSLGSGDHGKASTRSLQKATERSHELLNAVENALHACSKFIEDDEKGLIRTIESLRENCPFSLEEVDSLLIDW 447
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A2A6E1H0_9BACL (DNA repair protein RecN n=1 Tax=Candidatus Reconcilbacillus cellulovorans TaxID=1906605 RepID=A0A2A6E1H0_9BACL) HSP 1 Score: 68.9 bits (167), Expect = 1.220e-8 Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = 1
Query: 454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSAS-VNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALD 906
+T + + +LA+V+ I RG VA+TGETG GKS++ A SL AGAR AD V A ++ +L E H A +V R+G+ D G L V R + G S VNG V L LREL LI + F+ R + L LD
Sbjct: 2 LTELCIRHLAVVEEARICFRRGFVALTGETGAGKSIVVDALSLVAGAR-GSADFVRHGSEKAEIEALFDLEEDHPAR--DVCRRYGLDGDPG-EPLVVRRELTATGKSVCRVNGRLVNLSTLRELGECLINIHGQHEFQSLVRPETHLAWLD 149
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: K0S5J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5J6_THAOC) HSP 1 Score: 68.6 bits (166), Expect = 1.890e-8 Identity = 80/246 (32.52%), Postives = 120/246 (48.78%), Query Frame = 1
Query: 427 PLDVGRASRITRVEVDNLA-MVDNLSIKL-GRG-LVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPL-------DDGGRRLRVNRTV------GGKGSSASVNGCSVKLGALRELMSPLIYTVD-ANAFELFSRADGRLRALDRMFTPAEVAL--ADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDAS-----LLHHWVEELDEF 1089
P D+ SR++ ++ N+A + ++ + GR LVAVTGE+GTGKSL +S LA GA+ + L S+ + A V + E H +S A LE G+ +DGG + + RT+ G ++ S+NG +V + LREL + L VD A A + R RL LDR P + + A+K A ++ E+ L+ R GS DD ++ HWV+ELD F
Sbjct: 43 PSDIEPFSRLSSIKACNIAGLGPSVEVTFSGRARLVAVTGESGTGKSLLVSKVLGLATGAKFSSSILSTSKPAVAEVSAIIH--EPHLSSFATSLEIHGIDSSEILCVDEDGGCEIHLRRTLIHNERSGRTTTTCSINGRNVSVKTLRELTAHLFTRVDVAVASQALGRPAARLTILDRG-VPEHLLIDCANKRDDYKAAKRKRESIEGELKSRV-LPQNIRGSKDDLDEDQIEMMRHWVDELDSF 284 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig848.19869.1 >prot_Ecto-sp13_S_contig848.19869.1 ID=prot_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp MARAGVVLLLAGLAWPHDTLPFALGARNTPPYGRCRRRRETRSTSSFIPSback to top mRNA from alignment at Ecto-sp13_S_contig848:203..4991- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig848.19869.1 ID=mRNA_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig848:203..4991- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig848:203..4991- >mRNA_Ecto-sp13_S_contig848.19869.1 ID=mRNA_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig848:203..4991- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |