mRNA_Ecto-sp13_S_contig848.19869.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig848.19869.1
Unique NamemRNA_Ecto-sp13_S_contig848.19869.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE)

HSP 1 Score: 943 bits (2438), Expect = 0.000e+0
Identity = 500/531 (94.16%), Postives = 513/531 (96.61%), Query Frame = 1
Query:    1 MARAGVVLLLAGLAWPHDTLPFALGARNTPPYGRCRRRRETRSTSSFIPSATATASHVGNRAAWGLLRSKTTARVRPRARRCSMYSETIRDSPDGERMRSAEVEHQSSLNRTPPPVRRGHGTGLAAGGVGSMKADTIGGLALPLDVGRASRITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDASLLHHWVEELDEFREGEMAFMDRMRSVVESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSDLWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR 1593
            MARAGVVL+LAGLAWPHDTLPFALGARNTPPYGRCRRRRET S SSF+PSATATA HVGNRAAWGLLRSK  ARVRPRARRCSMYSE IRDSPDGERMRSAE EHQSSLNRTPPP RRG+G GLAAG VGSM+ DTIGGLALPLD+GRASRITRVEVDNLAMV+N+SIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPL+DGGRRLRV RTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGR+RALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGP GSADDASLLHHWVEELDEFREGEMAFMDRMRS+VE FVDDWGED+LGPLAEPFLSGTLLSD+DAEE  RGG EGLSDLWPRLSRV EGMEDLEASRTKVELARQLAVEQSNP+SIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR
Sbjct:    1 MARAGVVLVLAGLAWPHDTLPFALGARNTPPYGRCRRRRETSSMSSFVPSATATALHVGNRAAWGLLRSKIRARVRPRARRCSMYSERIRDSPDGERMRSAESEHQSSLNRTPPPARRGYGNGLAAGSVGSMRVDTIGGLALPLDLGRASRITRVEVDNLAMVENVSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLEDGGRRLRVYRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRMRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPGGSADDASLLHHWVEELDEFREGEMAFMDRMRSIVERFVDDWGEDILGPLAEPFLSGTLLSDKDAEEGLRGGVEGLSDLWPRLSRVREGMEDLEASRTKVELARQLAVEQSNPDSIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWR 531          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A398CC32_9BACL (DNA repair protein RecN n=1 Tax=Cohnella faecalis TaxID=2315694 RepID=A0A398CC32_9BACL)

HSP 1 Score: 76.6 bits (187), Expect = 4.400e-11
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKG-SSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDR 909
            +  + + NLA+++N+S+   RG   +TGETGTGKS++  A +LAAG R   AD++    + A ++   +L+ GH     EVLER G+  D     L V R +  +G SSA +NG +V L  LRE+   L+     +  +   R D  L  LD+
Sbjct:    2 LRELSIRNLAVIENVSVSFHRGFHVLTGETGTGKSIVIDALALAAGGR-GSADMIRHGEAKADIEAVFDLSAGH--PVWEVLERLGIEADSE-ESLLVRRELISQGKSSARINGQNVTLSMLREVGEHLVNIHGQHEHQSLLRTDRHLEWLDQ 150          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: B8C1M4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1M4_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 5.890e-11
Identity = 113/431 (26.22%), Postives = 182/431 (42.23%), Query Frame = 1
Query:  442 RASRITRVEVDNLAMVDN------LSIKLGRG---LVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEV------LERFGVP----LDDGG---RRLRVNRTV-----GGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFEL-FSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGP---EGSA-------DDASLLHHWVEELDEFREGEMAFMDRMRSVV-ESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSD--LWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLN----SLDDLVKSV---GEKLERSVESLPVLPITLEEVEERTVKW 1590
            R+S+I  ++  N+A + N      + +  G      +AVTGE+G+GKSL+ S          +  DLV   G  A   L   L EG     + V      LERFG+      +D      +L + RT+     G   S   +NG  + L +LR + +PL   VD  A     +R   RL  +D      E +L      +    K+A  +R RL+        P   +GS        D   LL HWV+EL++F      F D +     E  +D + E           SG L + ++ ++ + GG     D  L+  +    E ++ +E+       A +     S+PES A A+ K+R LL     +N G   D +E TH+ LN    SL++  +S+      +  ++E +    I++EE++     W
Sbjct:   92 RSSQIVSIKSTNIAGLTNSQGTSDIEVNFGSNGACFIAVTGESGSGKSLLVS----------KAVDLV--TGGKAVATLVPTLGEGGEDERSSVEMISSSLERFGIDPTILSNDQSTMTNQLHLQRTLQWSDTGRLKSICRINGKHISLKSLRHIAAPLFTRVDVGAAATALARPASRLAMIDM---GVEDSLKQNCLEMRESYKRARKKRMRLKSELESRVLPSSMQGSGYTSTSEEDQTELLGHWVDELEKFETRTNLFRDALLGQYNELMMDQYNEH-----DNKKSSGLLNTLQNFKKTTWGGGNASEDNSLFATILEFREEIKAVESQLASAHAAYESLASLSSPESAAVALEKVRKLLYSISRDNSGPLFDSIETTHDLLNEVESSLNECARSIDGDSNSVISTLEQMICNGISIEEIDNIVADW 502          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A7S2PIS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PIS7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.830e-9
Identity = 114/435 (26.21%), Postives = 185/435 (42.53%), Query Frame = 1
Query:  448 SRITRVEVDNLAMVDN------LSIKLGRG--LVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGV-PL-----------DDGGRR--------LRVNRTV--GGKGSSASV---NGCSVKLGALRELMSPLIYTVDAN-AFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCR-------FEGGPEGSA---DDASLLHHWVEELDEFREGEMAFMDRMRSVVESFVDDWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSD--LWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLN----SLDDLVKSV---GEKLERSVESLPVLPITLEEVEERTVKW 1590
            S I  V+  N+A + N      + I+ G    LV VTGE+G+GKSL +S A  +  G +     LV  +   + ++L + L E H ++ +  L+ FG+ PL           D G           L + RT+  G  G   S+   N   V L  LRE+ SPL  TVD   A    +RA  RL  LD     +      ++R V    K+A  RR ++++           +G   GS    +   LL HWV+ELD F     A ++R +  +     +   D  GP      S  ++S      E   GE    D  +   L +  E ++ +E+       A +     +  ES A ++ ++R LL     ++ G   + +E THE LN    SL++  +S+      +  ++E+     +++EEV+     W
Sbjct:   82 SHIVSVKSHNIAGIVNDKGNCDIEIEFGSAACLVCVTGESGSGKSLLVSKALDVVTGGKATNT-LVQDQDKESWIELIVRLCEPHLSTVSSTLQHFGIDPLILYHQHTEDTTDVGDHNNEHASVGYLHLQRTLVAGSSGKLKSICRINEKHVSLKTLREIASPLFTTVDVGVASGALARAASRLAMLDIGVEDSLKQQCIQSRDV---FKEATKRRKKIKKELESRILPSSMQGNAYGSELEQEQIELLEHWVDELDMFE----ARVNRFQETIYEQYSELIADGNGP-----GSNNIISTLQKFRECVWGEHNDDDDSILANLLQFREDIKAVESQLIAANAAYEGLASLTATESAAVSLERVRKLLYTISSDDSGPMFEKVERTHELLNIVEESLNECARSIDGGSNSIISTLENARSTGVSMEEVDGLVADW 503          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A6U6F288_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6F288_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.200e-9
Identity = 86/267 (32.21%), Postives = 125/267 (46.82%), Query Frame = 1
Query:  448 SRITRVEVDNLAMVDN----LSIKLGR--GLVAVTGETGTGKSL-ISSAFSLAAGARVRGA-----DLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVP---LDDGGR---------RLRVNRTVG--------GKG---------------SSASVNGCSVKLGALRELMSPLIYTVDANAF-ELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQA-EARRARLEQR---CRFEG-GPEGSADDASLLHHWVEELDEF 1089
            S I  ++  NLA +D+    +++ LG    LVAVTGETGTGKSL +  A  +A G +V  +     D      S A V+++L+L++ H   T  ++   G+    L++G R         RL + RT+         G+G               S   VNG  V L ALR + SPL+  VDA+A     S+   RL  +D+  +    A A +AR    Q +Q  EA   + E +       G G E + +   LL HWV+ELDEF
Sbjct:  113 SCIVSIKSRNLAGLDHGEGSVAVDLGSCPSLVAVTGETGTGKSLLVHKALEVAMGGKVSQSIVPSLDTTVGNESNATVEVELKLSQPHLDITRIIMAHHGIDPTLLENGRRSSQKNDTLPRLFLKRTISLQMKPHMQGEGLEKGERIKSPKPRLKSRCEVNGQVVTLKALRAIASPLVTLVDASAAASALSKPTSRLAIIDKGVSTRTKAAAWEAREKYRQARQVREALEMKAESKVLPASLPGYGDETTKEALDLLTHWVDELDEF 379          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: C6JIV8_FUSVA (DNA repair protein RecN n=8 Tax=Fusobacterium TaxID=848 RepID=C6JIV8_FUSVA)

HSP 1 Score: 69.3 bits (168), Expect = 8.960e-9
Identity = 45/152 (29.61%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDR 909
            +  ++++NLA++D L ++ G GL+ +TGETG GKS+I S  +L  G +    D++ S       Q   E+ +       E+  RFG+  +D    +R      GKG  A VN   V L +L+++M  L+  V  ++ ++    +  +R LD+
Sbjct:    2 LRELKIENLAIIDELDLEFGNGLIVLTGETGAGKSIILSGINLLIGEKAS-VDMIRSGEDHLLAQGVFEIND---EQAEELSARFGIETEDNEVIVRRYLDTNGKGK-AFVNNIRVSLSSLKDVMGTLVDIVGQHSHQMLLNKNNHIRLLDK 148          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: UPI00188FA580 (DNA repair protein RecN n=1 Tax=Aliidiomarina indica TaxID=2749147 RepID=UPI00188FA580)

HSP 1 Score: 69.3 bits (168), Expect = 9.050e-9
Identity = 76/250 (30.40%), Postives = 109/250 (43.60%), Query Frame = 1
Query:  454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDD---GGRRLRVNRTVGGKG-SSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDASLLHHWVEELDEF----REGEMAFMDRMRSVVESFVDDWGEDMLGPL 1179
            +T++ +   A+VD+L I   +G+ A+TGETG GKS+   A SL  GAR   + +V  R      ++             E LE   + LDD         + RT+  +G S A VNG  V +G L+EL   LI     N   L  + D +++ LD+    A +  A   RS   Q +Q    +  L+QR   E           LL + V ELD+F     E E    D  R    S + D  +  LG L
Sbjct:    2 LTQLNIRQFAIVDHLDIDFQKGMTAITGETGAGKSIALDALSLCLGARSE-SHMV--RPGANKAEITASFCVRQLPHVLEWLEEHDLSLDDVQDNEDSCIIRRTISAEGRSKAFVNGALVPVGTLKELGRMLISLHGQNEHHLLMKTDYQMQLLDQFSNHASLLAAT--RSSFQQWRQLIREQRELQQRVEHENARR------QLLEYQVGELDDFAPSAEEYEQLESDHKRLANASTLVDDAQFSLGTL 240          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A1Z5JGS5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGS5_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-8
Identity = 113/430 (26.28%), Postives = 184/430 (42.79%), Query Frame = 1
Query:  448 SRITRVEVDNLAMV-----DN-LSIKLGRGLVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAA-----VQLQLELA-EGHRASTAE-VLERFGVPLDDGGRRLRVNRTVGGKG----SSASVNGCSVKLGALRELMSPLIYTVDAN-AFELFSRADGRLRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEG---SADDAS--LLHHWVEELDEFREGEMAFMDRMRSVVESFVD-----------DWGEDMLGPLAEPFLSGTLLSDEDAEEESRGGEEGLSDLWPRLSRVHEGMEDLEASRTKVELARQLAVEQSNPESIAHAIVKIRGLLIDA---EDENVGLSQDLLEGT---HEDLNSLDDLVKSVGEKLE-------RSVESLPV-LPITLEEVEERTVKW 1590
            S IT +   NLA       DN + I    G+ A+TGETG+GKSL ++ A  +  G +   A L+G + S  A     V ++LEL+  GH  + A+  L+   V +   G  L     V  +G    S   +N   V L AL      L+  VDA+ A    S+ + RL  +D   +P  +   ++A+    Q +QA  +R  +E+  +    P     S DD +  L++HW+ EL  F++    F  R+ + +E   +           DW  D  G + E F+                      D+   L       E L A++     AR      S+ +S   AI K R  ++D+    D     ++ L + T   HE LN++++ + +  + +E       R++ESL    P +LEEV+   + W
Sbjct:   50 SYITSIRSQNLAGAQSSRSDNQIVIDFQSGMTAITGETGSGKSLFVARALEVVTGGKGISAALLGGKNSERAKVEEPVVVELELSLRGHYLNAAKSFLKTIEVDVPSTGLILLRRSLVMQQGRRVKSVCHINNQQVTLKALTAFSRSLVTVVDASTAAAALSKPEARLAIIDSAVSPDLLVEVNEAKR---QYRQARRKREAIERELKKRVLPSSFVQSDDDENVELMNHWIRELGVFQDRVELFRGRVATSIEQMTEVHDAILRFAESDWDNDDEGAMYESFMD-------------------FRDMIVSLD------EQLVAAQN----ARDALAALSSDQSAITAIEKTRSFIMDSLGSGDHGKASTRSLQKATERSHELLNAVENALHACSKFIEDDEKGLIRTIESLRENCPFSLEEVDSLLIDW 447          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: A0A2A6E1H0_9BACL (DNA repair protein RecN n=1 Tax=Candidatus Reconcilbacillus cellulovorans TaxID=1906605 RepID=A0A2A6E1H0_9BACL)

HSP 1 Score: 68.9 bits (167), Expect = 1.220e-8
Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  454 ITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVNRTVGGKGSSAS-VNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRALD 906
            +T + + +LA+V+   I   RG VA+TGETG GKS++  A SL AGAR   AD V      A ++   +L E H A   +V  R+G+  D G   L V R +   G S   VNG  V L  LREL   LI     + F+   R +  L  LD
Sbjct:    2 LTELCIRHLAVVEEARICFRRGFVALTGETGAGKSIVVDALSLVAGAR-GSADFVRHGSEKAEIEALFDLEEDHPAR--DVCRRYGLDGDPG-EPLVVRRELTATGKSVCRVNGRLVNLSTLRELGECLINIHGQHEFQSLVRPETHLAWLD 149          
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Match: K0S5J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5J6_THAOC)

HSP 1 Score: 68.6 bits (166), Expect = 1.890e-8
Identity = 80/246 (32.52%), Postives = 120/246 (48.78%), Query Frame = 1
Query:  427 PLDVGRASRITRVEVDNLA-MVDNLSIKL-GRG-LVAVTGETGTGKSL-ISSAFSLAAGARVRGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPL-------DDGGRRLRVNRTV------GGKGSSASVNGCSVKLGALRELMSPLIYTVD-ANAFELFSRADGRLRALDRMFTPAEVAL--ADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDAS-----LLHHWVEELDEF 1089
            P D+   SR++ ++  N+A +  ++ +   GR  LVAVTGE+GTGKSL +S    LA GA+   + L  S+ + A V   +   E H +S A  LE  G+         +DGG  + + RT+      G   ++ S+NG +V +  LREL + L   VD A A +   R   RL  LDR   P  + +  A+K     A  ++ E+    L+ R        GS DD       ++ HWV+ELD F
Sbjct:   43 PSDIEPFSRLSSIKACNIAGLGPSVEVTFSGRARLVAVTGESGTGKSLLVSKVLGLATGAKFSSSILSTSKPAVAEVSAIIH--EPHLSSFATSLEIHGIDSSEILCVDEDGGCEIHLRRTLIHNERSGRTTTTCSINGRNVSVKTLRELTAHLFTRVDVAVASQALGRPAARLTILDRG-VPEHLLIDCANKRDDYKAAKRKRESIEGELKSRV-LPQNIRGSKDDLDEDQIEMMRHWVDELDSF 284          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig848.19869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK48_9PHAE0.000e+094.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A398CC32_9BACL4.400e-1135.95DNA repair protein RecN n=1 Tax=Cohnella faecalis ... [more]
B8C1M4_THAPS5.890e-1126.22Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2PIS7_9STRA4.830e-926.21Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6U6F288_9STRA5.200e-932.21Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
C6JIV8_FUSVA8.960e-929.61DNA repair protein RecN n=8 Tax=Fusobacterium TaxI... [more]
UPI00188FA5809.050e-930.40DNA repair protein RecN n=1 Tax=Aliidiomarina indi... [more]
A0A1Z5JGS5_FISSO1.100e-826.28Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A2A6E1H0_9BACL1.220e-838.16DNA repair protein RecN n=1 Tax=Candidatus Reconci... [more]
K0S5J6_THAOC1.890e-832.52Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig848contigEcto-sp13_S_contig848:203..4991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score774.6
Seed ortholog evalue3e-221
Seed eggNOG ortholog2880.D8LCA1
Model size1623
Hectar predicted targeting categorychloroplast
Exons8
EggNOG free text desc.May be involved in recombinational repair of damaged DNA
EggNOG OGs2RZ0Y@2759,COG0497@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-14_005520.1
Cds size1623
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig848.19869.1prot_Ecto-sp13_S_contig848.19869.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig848 203..4991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464117.594139-CDS-Ecto-sp13_S_contig848:202..3231681464117.594139-CDS-Ecto-sp13_S_contig848:202..323Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 203..323 -
1681464117.6089246-CDS-Ecto-sp13_S_contig848:1012..11191681464117.6089246-CDS-Ecto-sp13_S_contig848:1012..1119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 1013..1119 -
1681464117.6202538-CDS-Ecto-sp13_S_contig848:1652..19231681464117.6202538-CDS-Ecto-sp13_S_contig848:1652..1923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 1653..1923 -
1681464117.6303215-CDS-Ecto-sp13_S_contig848:2306..24851681464117.6303215-CDS-Ecto-sp13_S_contig848:2306..2485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 2307..2485 -
1681464117.6408076-CDS-Ecto-sp13_S_contig848:2931..30721681464117.6408076-CDS-Ecto-sp13_S_contig848:2931..3072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 2932..3072 -
1681464117.6501765-CDS-Ecto-sp13_S_contig848:3384..34951681464117.6501765-CDS-Ecto-sp13_S_contig848:3384..3495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 3385..3495 -
1681464117.6589446-CDS-Ecto-sp13_S_contig848:3896..40821681464117.6589446-CDS-Ecto-sp13_S_contig848:3896..4082Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 3897..4082 -
1681464117.6682928-CDS-Ecto-sp13_S_contig848:4484..49911681464117.6682928-CDS-Ecto-sp13_S_contig848:4484..4991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig848 4485..4991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig848.19869.1

>prot_Ecto-sp13_S_contig848.19869.1 ID=prot_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=541bp
MARAGVVLLLAGLAWPHDTLPFALGARNTPPYGRCRRRRETRSTSSFIPS
ATATASHVGNRAAWGLLRSKTTARVRPRARRCSMYSETIRDSPDGERMRS
AEVEHQSSLNRTPPPVRRGHGTGLAAGGVGSMKADTIGGLALPLDVGRAS
RITRVEVDNLAMVDNLSIKLGRGLVAVTGETGTGKSLISSAFSLAAGARV
RGADLVGSRGSTAAVQLQLELAEGHRASTAEVLERFGVPLDDGGRRLRVN
RTVGGKGSSASVNGCSVKLGALRELMSPLIYTVDANAFELFSRADGRLRA
LDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPEGSADDA
SLLHHWVEELDEFREGEMAFMDRMRSVVESFVDDWGEDMLGPLAEPFLSG
TLLSDEDAEEESRGGEEGLSDLWPRLSRVHEGMEDLEASRTKVELARQLA
VEQSNPESIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVK
SVGEKLERSVESLPVLPITLEEVEERTVKWRVRRAMIRGD*
back to top

mRNA from alignment at Ecto-sp13_S_contig848:203..4991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig848.19869.1 ID=mRNA_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig848:203..4991- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGGGCTGGAGTAGTTCTTCTATTGGCTGGATTAGCATGGCCACA CGACACTCTCCCGTTCGCCCTGGGCGCAAGGAACACACCGCCGTATGGCC GCTGTCGCCGTCGAAGAGAGACGAGGTCGACGTCGTCGTTCATACCCTCT GCGACAGCAACAGCTTCGCATGTTGGCAACAGAGCAGCGTGGGGTTTGCT ACGCAGCAAAACAACGGCTCGAGTGCGTCCACGCGCCCGCCGGTGTAGCA TGTACTCCGAGACAATACGGGATAGTCCGGACGGGGAACGAATGCGCAGC GCTGAGGTTGAACATCAGAGCAGTCTCAACCGCACCCCACCACCGGTAAG AAGAGGGCATGGCACCGGCCTTGCTGCAGGCGGCGTCGGGAGCATGAAAG CAGACACCATTGGAGGCCTCGCATTGCCGCTGGACGTGGGCAGAGCAAGC AGAATCACCAGGGTTGAAGTTGATAATCTGGCCATGGTGGACAACCTCTC GATCAAGGTGTGTGCGGAGTCGGCGGTCTGTTGCTGCTGTGTAACGTTGG CGGGTGCCGAGCGATTCGTCTAGACCGGCATAGCACACCCGCAACATGTA GACTGCATGTACACGCCATCGACTTTTGAAGAGGAAGTCTGTTTGCGTCT CGTGTGTGGAATGCGTGGACACGATGTGGAACTTCGTAAGGACTTGGTCT CAGGTTCATGATCAGCATTGTCTTCCCTCGTTTTCGGAGCAGCTACGTAC TTGGATCTTGGCGCGCTTCCGCCCGATCTCGTTGTTTGCGGCGTGTAAAC CAATAAATGCCAGGCCACCTCAACATGTTCACGTCTATAACATAAGCCAC TGATAAAGACTTGGTGATCGGTTTCACCACCTTGGTATTTGCTCATCGAA CCGATCCAGCTCGGACGCGGCTTGGTCGCGGTCACCGGCGAAACGGGGAC CGGCAAGAGCCTCATCTCCAGCGCCTTCAGCCTGGCTGCCGGGGCTCGCG TGAGGGGCGCGGACTTGGTGGGAAGCAGGGGGTCCACGGCCGCTGTCCAA CTGCAGCTGGAGCTGGCCGAAGGTCACCGAGCGTCTACGGCGGAGGTTAG CACTGGCTGGGCGCGGCGGTTGCGTTCTAGTGTTGTCCTGTGAATCACTT GTTCGGTAGGCCTAGAGCAGTCGCTGGTGCGACGTACCACCTGCTGATGG CGGGTTGATTGCAACGATTCCCCTCGTTCCTCAGAGAGGCTGCGTGGGAG GCCCAGGAAGAAGCGCTGGACATTGACAGCCATACCTCGCGCTCCAAAAA CAGTACTGCTGCGCCTTGAGTCCTCGCTCTCGGTAGAAGGCATGGGGACA AGGAACATTTCACCTCACGACAACTTCGTACAACTTGATGTGGGCGGCAG CGCATGCGCAATCGGGTTGGTCTCAAATTTCTCGTGTAATTCATCAAAAT GCCTGAAGTGGCGCTTTTGAAACCGCCCTCACGTGTTGCGATGCAGGTAC TTGAACGCTTCGGCGTGCCCTTGGACGATGGCGGGCGAAGACTGAGGGTC AACCGAACCGTAGGGGGCAAGGGGTCTTCGGCATCAGTGAACGGGTGTTC GGTGAAGGTGAGGCCTTAGAATCGCACAAAGGTGACGGTGCCGTTGCAGG GTAGCGTGGGCTTGGCGCGCCGATCGAATTCTTGCGGGTCTCGCTTCAGC AGTTCGCAGCTACGTACAGGCCTGCTGCACGAGACTCGTCCCACGCATTT ACAACCGTTTGGCGAGCCAAGTGGTGAGCAATTCGCGCGGTCCATAGGGA TGCTGCCGTCAAACCGGAGCCGGTCATCTCTTGAGCGTCCCCCCGCTCGA GCTCAATCTCTTCAGTAATGCCCGGTGGTGACCTTTCCTGCCCCCACACG CGCCCCGTCATGACGCCAGCTTGGAGCCCTACGAGAACTCATGTCCCCCC TCATCTACACCGTCGACGCCAACGCCTTCGAGCTGTTTTCGCGGGCCGAT GGCCGCCTGAGGGCGTTAGACCGCATGTTCACCCCGGCAGAGGTGGCTCT GGCAGACAAGGTGTAGTATCATGGTGCCTGGCAACCTTGAATTTTGTACC GCGCCCCGGTAGAGCGTCAGCTTGTGCTCAGTTTCTAGCATGACAGGCAC ATTGACGGTTTCGTAACCGTCTGCCTCTCGTGTGACCGGTGTTTTTTCTG TCTTACGGTTACCGCTGGGGGGGGGGGGTAACAGAGTAGTTGGTGCTTGT CTCAGTATTGAAGAGCCCCTACCTTGGTCGTTCACAAAAGTCGCACGAGC GGTCTGCGTGCTCGATGCTCCCAAACGCAGTGACGTATTTCGCGCCTTGA CGGCGGTAAACATTTCACCGTTTGTGTTGCCAGGCGGGAAACGGTGGACA CGGGAGAAATACTGAAAGCAACACGAACCCTGACTTTAACCGTTGACACC GTCCCGCCGCTTCTTTCGGCTGCTGCGCGTGGTTGCTGTTGCGACGCCGC GGGCAGGCGAGGAGCGTGGTCGCCCAGCTGAAGCAGGCGGAAGCTCGCCG CGCGAGACTGGAGCAGCGTTGCCGTTTCGAGGGTGGGCCCGAGGGGTCCG CAGACGACGCATCTCTACTGCACCACTGGGTGGAGGAGCTGGACGAGTTT CGAGAAGGGGAGATGGCCTTCATGGACAGGATGAGGTGCTGGTAACATGC TCTGCTTGTTGGTTGCGAACGTACAGAGAGAGAGAGAGAGAAAGAGAGAG AGAGAGAGAGAGAGAGAGTTGGGAGAGTCACAGCCCATGTTGTCAGGGTG GTTGCGAGAGGGAATCTTGAGCGATTGTTCTGTCTGTGTCCGTGGCCCCA CCTGTGCTCAAGCGCCGTCCTCGTACGTAACCTGGGTGGCCGTTCCCCAA CGATCAGCGACACCCCCCGGCCTACCTTCAATACACTTCACCGCCTTACT CTTATCTCCAATACTACCTATACGGCATGCACCAAAATTGCGGAAACCAA AACCTCCTCTCGACGACGTTCAACGCACGACCCTCCCCCCCTCCCCGCGT GCGCCCCCGTTCGCCCAGGTCTGTCGTAGAAAGCTTTGTAGACGACTGGG GTGAGGATATGTTAGGGCCTCTCGCCGAACCTTTTCTATCTGGCACGCTG CTGTCGGACGAAGATGCGGAGGAGGAGTCGAGAGGTGGCGAAGAGGGGTT GTCGGACCTGTGGCCGCGCCTGTCGCGGGTCCACGAGGGCATGGAAGACT TGGAGGCTAGCCGGACGAAGGTGGAGCTAGCGAGGCAGCTGGCCGTGGAG CAGTCCAACCCTGAGAGTATCGCGCATGCCATCGTTAAGGTGAGATGGTT GCCTCGCAGCGCGGGGCACGTGTGTGGGTGAGTTGTGTGTCAAGTGCGTT CTGCATCCGAATTTTCGGGCTGGTGCCCTGCGTGGGACCTTTTGTGAGTG CGCCCTCGCGTAGCGGACGCGAAAAGAGAGCCTCTACCGCTCTGTCTGCC GCTATTCACACCTCACGTGTTGAAGAGGACCAGACTACGAAGCAACTTCG TGTCCGCTCTCAGGATAGGAGCACGCTCTTTCTTTATCGTCTTTCGGTTG GCCTTCGCCTGCAGAGGTAGAACGAGTAAGTACCCGCATTTGTGCGTCGG GACATATTTCGCTGGCCGTTTATTGCATGTATTGCATAGTCCGTGTTTGT TGATCGACGTATGAATATCGACGTCTGGATGAATGCGGGAAGTGCTGTTT TAGGTGACGCTCCATGCTGATCCCGCTAGCCGAGAGTACCCCTTTTTCAT GCATAAACCCACATGTTTTGTTGTTCCGACGTGTCCGAACGCACCACTGA CTCCTCATGGCTCTTGTCGCAGATTCGAGGACTTCTGATCGATGCGGAGG ACGAGAACGTCGGCCTAAGCCAGGACCTGTTGGAGGGAACCCACGAAGAC CTCAACTCTTTGGACGACTTGGTCAAGAGGTGCGTCAAGTCAGAGTAAAC GAGCGAGGGAGAGAGGGGAACAGCCATCGGCTAACACACGACACGGCGTG ATGGTGCTTGACAGACCAGATCGCATTTTGATTTTTGCTCAGTGGGAGAA AAAGTCGGCAAATATTCGTGGTTGTTGGACGCTCATCGGCAGGGAAGTGG ACCCCCCCTGCGACCGGCTAAGTGGGGCAGAAGAAATCAGTCCCTCATAT CTGTCCCGGTTTTCGATCGGGCACCGTTGTGCAATGAGCATCGTGGGTGC ACTTTTCGGTGCTGCTCGTGTTGTGATGGGAGCATGGTGCCCCCCCGCAA TGCCAACGACGACGCCTGTCATAGAGGAAGCTGAAGGTGCGCTAGCCGTG GTCACCAGAGTTGGCTAGCCGCGGCCTGCACCCAAACAATTCCTCAGTAT TCGAAGCAGCATGACGTGGCCCTTCCCACGCCAAATCAACAACATCACGT CTCCGACGCGAAAGAAGAGCGTGTGCGGTCTCTGTTCCGGGTGCTCGTGT TGGGGGACGAAAGAGACTGGCAGGTGCCCGCACATTTTGCGGAGTATTTC AGGTTTTCAGATACACGGCCTCCACCACCGGCTATCATGTCAACAGAAAA CCCACCGTTGTATTTTCATCTGATGCTTGGATTTTGTGTGTGTCTTTTTG TGGCTTATCGTTGGACAGTGTCGGCGAGAAGCTGGAGAGGTCGGTCGAGT CCCTACCGGTGCTGCCGATAACTCTGGAGGAAGTCGAGGAGAGGACTGTC AAGTGGAGGGTGAGAAGGGCAATGATAAGGGGAGACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig848:203..4991-

>mRNA_Ecto-sp13_S_contig848.19869.1 ID=mRNA_Ecto-sp13_S_contig848.19869.1|Name=mRNA_Ecto-sp13_S_contig848.19869.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig848:203..4991- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGGGCTGGAGTAGTTCTTCTATTGGCTGGATTAGCATGGCCACA
CGACACTCTCCCGTTCGCCCTGGGCGCAAGGAACACACCGCCGTATGGCC
GCTGTCGCCGTCGAAGAGAGACGAGGTCGACGTCGTCGTTCATACCCTCT
GCGACAGCAACAGCTTCGCATGTTGGCAACAGAGCAGCGTGGGGTTTGCT
ACGCAGCAAAACAACGGCTCGAGTGCGTCCACGCGCCCGCCGGTGTAGCA
TGTACTCCGAGACAATACGGGATAGTCCGGACGGGGAACGAATGCGCAGC
GCTGAGGTTGAACATCAGAGCAGTCTCAACCGCACCCCACCACCGGTAAG
AAGAGGGCATGGCACCGGCCTTGCTGCAGGCGGCGTCGGGAGCATGAAAG
CAGACACCATTGGAGGCCTCGCATTGCCGCTGGACGTGGGCAGAGCAAGC
AGAATCACCAGGGTTGAAGTTGATAATCTGGCCATGGTGGACAACCTCTC
GATCAAGCTCGGACGCGGCTTGGTCGCGGTCACCGGCGAAACGGGGACCG
GCAAGAGCCTCATCTCCAGCGCCTTCAGCCTGGCTGCCGGGGCTCGCGTG
AGGGGCGCGGACTTGGTGGGAAGCAGGGGGTCCACGGCCGCTGTCCAACT
GCAGCTGGAGCTGGCCGAAGGTCACCGAGCGTCTACGGCGGAGGTACTTG
AACGCTTCGGCGTGCCCTTGGACGATGGCGGGCGAAGACTGAGGGTCAAC
CGAACCGTAGGGGGCAAGGGGTCTTCGGCATCAGTGAACGGGTGTTCGGT
GAAGCTTGGAGCCCTACGAGAACTCATGTCCCCCCTCATCTACACCGTCG
ACGCCAACGCCTTCGAGCTGTTTTCGCGGGCCGATGGCCGCCTGAGGGCG
TTAGACCGCATGTTCACCCCGGCAGAGGTGGCTCTGGCAGACAAGGCGAG
GAGCGTGGTCGCCCAGCTGAAGCAGGCGGAAGCTCGCCGCGCGAGACTGG
AGCAGCGTTGCCGTTTCGAGGGTGGGCCCGAGGGGTCCGCAGACGACGCA
TCTCTACTGCACCACTGGGTGGAGGAGCTGGACGAGTTTCGAGAAGGGGA
GATGGCCTTCATGGACAGGATGAGGTCTGTCGTAGAAAGCTTTGTAGACG
ACTGGGGTGAGGATATGTTAGGGCCTCTCGCCGAACCTTTTCTATCTGGC
ACGCTGCTGTCGGACGAAGATGCGGAGGAGGAGTCGAGAGGTGGCGAAGA
GGGGTTGTCGGACCTGTGGCCGCGCCTGTCGCGGGTCCACGAGGGCATGG
AAGACTTGGAGGCTAGCCGGACGAAGGTGGAGCTAGCGAGGCAGCTGGCC
GTGGAGCAGTCCAACCCTGAGAGTATCGCGCATGCCATCGTTAAGATTCG
AGGACTTCTGATCGATGCGGAGGACGAGAACGTCGGCCTAAGCCAGGACC
TGTTGGAGGGAACCCACGAAGACCTCAACTCTTTGGACGACTTGGTCAAG
AGTGTCGGCGAGAAGCTGGAGAGGTCGGTCGAGTCCCTACCGGTGCTGCC
GATAACTCTGGAGGAAGTCGAGGAGAGGACTGTCAAGTGGAGGGTGAGAA
GGGCAATGATAAGGGGAGACTGA
back to top