mRNA_Ecto-sp13_S_contig8459.19840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8459.19840.1
Unique NamemRNA_Ecto-sp13_S_contig8459.19840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE)

HSP 1 Score: 435 bits (1119), Expect = 6.250e-140
Identity = 284/323 (87.93%), Postives = 288/323 (89.16%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTD-IRSISGXXXGSXXXXXXXXXXGACDTLEAAXXXXXXXXXXXXXXXA---------ADGVDEPFTSSARRSRRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS 939
            RAALEVEQLVNPMMADVGLEGATFKVLVEESK LGPSGADRVQFL+EANEGQTRGTVDAVASSGEKSRLLLLLET LPPPQARST +VGDRRG VVGEEG TAE VDADG+AAGTAAGGG GVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTD TAVM SAG D IRSISG XX  XXXXXXXXXX         XXXXXXXXXXXXXXX          ADGVDEP +SSARR RRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS
Sbjct:  592 RAALEVEQLVNPMMADVGLEGATFKVLVEESKALGPSGADRVQFLIEANEGQTRGTVDAVASSGEKSRLLLLLETLLPPPQARSTAKVGDRRGVVVGEEGVTAEGVDADGEAAGTAAGGGGGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDTTAVMASAGKDDIRSISGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGVDEPSSSSARRPRRQGKGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQGS 914          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A7S3LCQ9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCQ9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.960e-18
Identity = 70/199 (35.18%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLV--------EESKTLGPSGADRVQFLMEANEGQTR------GTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVP-PCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKAL 552
            R A  + + VN  +  +G+  + F + +        + S   G  G D V+F+++     T+      GT+  VASSGEK+R+LL +E  LP              G +    G T   V              SG++  P P  V+YDEIDAHVGGR AVA+G +LA+Q   SQV+ +TH+ +VAA AD H+VV K L
Sbjct:   42 RVATILREFVNRRLPSLGMATSEFDITINSNARKCTDSSAYSGNLGLDDVEFMLQHGTRTTKEPSRRGGTLHQVASSGEKARILLAIECSLP--------------GSIRAATGSTNTFV--------------SGILPPPIPITVVYDEIDAHVGGRAAVALGHMLADQSLQSQVIAITHSPAVAASADAHIVVQKTL 212          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A512PH52_9CELL (DNA repair protein RecN n=2 Tax=Cellulomonas soli TaxID=931535 RepID=A0A512PH52_9CELL)

HSP 1 Score: 92.4 bits (228), Expect = 3.780e-16
Identity = 67/203 (33.00%), Postives = 99/203 (48.77%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
            RAA  + ++V+  +A + + GA+ ++ V+  +  GP G DRV+ L+ A+ G     +   AS GE SR++L LE  L      +T                                          P   ++DE+DA VGGR A+ VGR LA   R +QV+VVTH A VAA ADQHLVV K+ +D   V+  +  D+R++ G
Sbjct:  384 RAAQRLAEIVSAELAGLAMAGASLQIDVDGLEEPGPHGLDRVEMLLVAHAGAPARPLGKGASGGELSRVMLALEVALASEPGSAT------------------------------------------PGTFVFDEVDAGVGGRAAIEVGRRLAALARGTQVLVVTHLAQVAAFADQHLVVTKSTSDGVDVVTES--DVRTVRG 542          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI001F3E70BC (DNA repair protein RecN n=1 Tax=Antribacter sp. KLBMP9083 TaxID=2910976 RepID=UPI001F3E70BC)

HSP 1 Score: 91.7 bits (226), Expect = 7.240e-16
Identity = 75/183 (40.98%), Postives = 98/183 (53.55%), Query Frame = 1
Query:    4 AALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQA-RSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAG-GGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
            AA ++   V   +  + + GA   V V+ ++ LGP GAD V FL+  + G     +   AS GE SR++L LE  L    + R+   VG    G+ G   G+   +    DA GTA      G +R      ++DE+DA VGGR AV VGR LA  GR +QVVVVTH A VAA AD HLVV K
Sbjct:  378 AASQLAGAVTQELHGLAMGGAHLVVTVDPAEALGPYGADLVTFLLVPHPGAPERPLGKGASGGELSRVMLALEVALATASSTRAASVVGP---GLPGLFDGSGAALVGRTDAPGTAGEQSDDGALRRT---FVFDEVDAGVGGRAAVEVGRRLAALGRSTQVVVVTHLAQVAAFADAHLVVTK 554          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: F4H8C8_CELFA (DNA repair protein RecN n=4 Tax=Cellulomonas fimi TaxID=1708 RepID=F4H8C8_CELFA)

HSP 1 Score: 91.3 bits (225), Expect = 8.910e-16
Identity = 71/202 (35.15%), Postives = 102/202 (50.50%), Query Frame = 1
Query:    4 AALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
            AA  + + V+  +A + + GA  +V VE  +  GPSGADRV+ L+  + G    ++   AS GE SR++L +E  L                        TA D               SG  R  P   ++DE+DA VGGR A+ +GR LA+  R SQV+VVTH A VAA AD+HLVV K+  +   V+  +  D+R ++G
Sbjct:  385 AAARLARSVSHELAGLAMGGAELQVAVEPGEP-GPSGADRVEMLLVPHAGAPARSLGKGASGGELSRVMLAIEVTLA-----------------------TAPD---------------SGAAR--PATFVFDEVDAGVGGRAAIEIGRRLADVARSSQVLVVTHLAQVAAFADRHLVVTKSTAEGVDVVTES--DVRLVTG 543          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A1Z5K9M0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9M0_FISSO)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-15
Identity = 67/188 (35.64%), Postives = 99/188 (52.66%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLM------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
            + A E+   V   +  VG+E + F   +       P+  D V+FL+      +  +    G ++ +ASSGEK+R+LL +E  LP   A S + V      V  E+   AE                  +V +PP A++YDEIDAHVGGR AVA+G +L  Q + SQV+ +TH+AS+AA AD H+VV +
Sbjct:  526 QVADELTSSVTSRLPLVGMERSIFTASITPRGDA-PNSDDTVEFLLLHRNADDEKKAADGGRMNEIASSGEKARILLCVECELPGSVAAS-YAVAR----VKKEDETEAE------------------LVGLPPIAIVYDEIDAHVGGRAAVAMGSMLVEQSKWSQVIAITHSASIAAAADSHIVVQR 689          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: B8C1M4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1M4_THAPS)

HSP 1 Score: 91.3 bits (225), Expect = 1.250e-15
Identity = 69/214 (32.24%), Postives = 105/214 (49.07%), Query Frame = 1
Query:    7 ALEVEQLVNPMMADVGLEGATFKVLVE------ESKTLGPS--GADRVQFLM---------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRD---------------SQVVVVTHTASVAALADQHLVVDKAL 552
            A  + + V+ ++  +GLEG +F+V ++      E    G    G D V FL+         + +E Q  G ++ V SSGEKSR+LL +ET LP              G        +A++V  D               +  P  ++YDEIDAHVGGR AV + +LLA+Q R                SQ++ +TH+ASVAA+AD+H+VV++ +
Sbjct:  566 ATNLSEAVSQILPSLGLEGTSFQVQLKQRQGGFEDPYFGADNVGVDLVDFLLLHQKSNTGGQIDESQRGGNIEQVGSSGEKSRVLLAIETALP-----------GSIGSTCNAYSNSADNVQTDSSP------------KAQPICIIYDEIDAHVGGRAAVTMAKLLADQTRKAPDLADIDTATMERGSQIIAITHSASVAAIADKHIVVERTI 756          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI00177C5FFD (DNA repair protein RecN n=2 Tax=Cellulomonas sp. JH27-2 TaxID=2774139 RepID=UPI00177C5FFD)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-15
Identity = 72/201 (35.82%), Postives = 98/201 (48.76%), Query Frame = 1
Query:    7 ALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISG 609
            A ++   V   +A + + GA  +V VE ++ LGP GAD+V+ L+  + G     +   AS GE SR++L LE  L                        T+ D               SG  R  P   ++DE+DA VGG+ AV VGR LA   R SQV+VVTH A VAA AD HLVV K+   A  V     +D+RS++G
Sbjct:  387 AQQLANAVTAELAGLAMSGADLRVQVEPAQALGPHGADQVEMLLVPHAGAPARPLGKGASGGELSRVMLALEVALA-----------------------TSPD---------------SGASR--PGTFVFDEVDAGVGGKAAVEVGRRLAMLARQSQVLVVTHLAQVAAFADHHLVVTKS--QAAGVDVVTDSDVRSVTG 545          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: UPI000F7A0397 (DNA repair protein RecN n=1 Tax=Antribacter gilvus TaxID=2304675 RepID=UPI000F7A0397)

HSP 1 Score: 90.5 bits (223), Expect = 1.630e-15
Identity = 70/182 (38.46%), Postives = 95/182 (52.20%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
            +AA  + + V   +  + + GA   V V++++ LGP GAD+V FL+  + G     +   AS GE SR++L LE  L    A +      R+G         A+D        G  A G    +R      ++DE+DA VGGR AV VGR LA  GR +QVVVVTH A VAA AD H+VV K
Sbjct:  377 QAASALAEAVTEELHGLAMGGAHLVVTVDDAEALGPFGADQVTFLLVPHPGAPERPLGKGASGGELSRVMLALEVALAT--AANDRSASARQG---------ADD--------GAGAHGDRAALRRT---FVFDEVDAGVGGRAAVEVGRRLATLGRSTQVVVVTHLAQVAAFADAHVVVTK 536          
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Match: A0A1Z5JGS5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGS5_FISSO)

HSP 1 Score: 90.1 bits (222), Expect = 2.700e-15
Identity = 63/188 (33.51%), Postives = 97/188 (51.60%), Query Frame = 1
Query:    1 RAALEVEQLVNPMMADVGLEGATFKVLVEESKTLGPSGADRVQFLM------EANEGQTRGTVDAVASSGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDAAGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVVVVTHTASVAALADQHLVVDK 546
            + A E+   V   +  VG+E + F   +       P+  D + FL+      +  +    G ++ +ASSGEK+R+LL +E  LP   A S             E     ++ +A+             +V +PP A++YDEIDAHVGGR AVA+G +L  Q + SQV+ +TH+AS+AA AD H+VV +
Sbjct:  509 QVADELTSSVTSRLPLVGMERSIFTASITPRGDT-PNSDDTIDFLLLHRYADDEKKAADGGKMNEIASSGEKARILLCVECELPGSVAAS----------YAVERAKKEDETEAE-------------LVGLPPIAIVYDEIDAHVGGRAAVAMGSMLVEQSKWSQVIAITHSASIAAAADSHIVVQR 672          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8459.19840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK48_9PHAE6.250e-14087.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3LCQ9_9STRA7.960e-1835.18Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A512PH52_9CELL3.780e-1633.00DNA repair protein RecN n=2 Tax=Cellulomonas soli ... [more]
UPI001F3E70BC7.240e-1640.98DNA repair protein RecN n=1 Tax=Antribacter sp. KL... [more]
F4H8C8_CELFA8.910e-1635.15DNA repair protein RecN n=4 Tax=Cellulomonas fimi ... [more]
A0A1Z5K9M0_FISSO1.180e-1535.64Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B8C1M4_THAPS1.250e-1532.24Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
UPI00177C5FFD1.580e-1535.82DNA repair protein RecN n=2 Tax=Cellulomonas sp. J... [more]
UPI000F7A03971.630e-1538.46DNA repair protein RecN n=1 Tax=Antribacter gilvus... [more]
A0A1Z5JGS5_FISSO2.700e-1533.51Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8459contigEcto-sp13_S_contig8459:4364..6525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score434.1
Seed ortholog evalue5.3e-119
Seed eggNOG ortholog2880.D8LCA1
Model size1566
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.May be involved in recombinational repair of damaged DNA
EggNOG OGs2RZ0Y@2759,COG0497@1
Cds size906
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.285031-UTR-Ecto-sp13_S_contig8459:4363..49871681464115.285031-UTR-Ecto-sp13_S_contig8459:4363..4987Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8459 4364..4987 -
1681464115.3434324-UTR-Ecto-sp13_S_contig8459:6489..65251681464115.3434324-UTR-Ecto-sp13_S_contig8459:6489..6525Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8459 6490..6525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464115.3007932-CDS-Ecto-sp13_S_contig8459:4987..54491681464115.3007932-CDS-Ecto-sp13_S_contig8459:4987..5449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8459 4988..5449 -
1681464115.3149083-CDS-Ecto-sp13_S_contig8459:5657..60621681464115.3149083-CDS-Ecto-sp13_S_contig8459:5657..6062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8459 5658..6062 -
1681464115.32659-CDS-Ecto-sp13_S_contig8459:6450..64891681464115.32659-CDS-Ecto-sp13_S_contig8459:6450..6489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8459 6451..6489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8459.19840.1prot_Ecto-sp13_S_contig8459.19840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8459 4988..6489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8459.19840.1

>prot_Ecto-sp13_S_contig8459.19840.1 ID=prot_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
MMADVGLEGATFKVLVEESKTLGPSGADRVQFLMEANEGQTRGTVDAVAS
SGEKSRLLLLLETRLPPPQARSTFEVGDRRGGVVGEEGGTAEDVDADGDA
AGTAAGGGSGVVRVPPCAVLYDEIDAHVGGRTAVAVGRLLANQGRDSQVV
VVTHTASVAALADQHLVVDKALTDATAVMGSAGTDIRSISGSSGGSSSGS
RGSGGGGACDTLEAAAASLPPPPTRPPSPPAADGVDEPFTSSARRSRRQG
KGRGGVSVSIREVNGREREEELARMAAGDMGGGAAAELAREMLRYSRRQG
S*
back to top

mRNA from alignment at Ecto-sp13_S_contig8459:4364..6525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8459.19840.1 ID=mRNA_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:4364..6525- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGGCGTTGGAGGTGGAGCAGCTGGTTAATCCGATGATGGCAGACGT GGGCTTAGAGGGCGCCACCTTCAAGGTGCGAATTGTTTGTGTTGACCCGA GTCGTTGCGGCGTCGAGGTTTGGATCGACTCGACGATTCTGTTGACGGTG GTGATGGCAGAGATGAGGCCTGAAAAATCGCTACCTCTATGACTTCACAT CGTATGCCCGTGCTCCCCCACGTAGTTTGCAAAGCGAGCATTTGTGAGCC GTCCAACTGGATGAAAAATGTCGCCGCATGCTGTTATCACCCCCCCCCCT CCCCTCTTGCGAAAACGCGCCCTATCGCTCAGACCAGACATTGTCGGGAT GCGAGGTCAATGGTCTCACGACTGCCGCATGCGTTTACCTTCGAACACCC CCCCCCATTTCCCGCCGCTGCCCCCCTCCGGACCCGTACCGACCGACGGA TATGGCATGGTAGGTCTTAGTAGAAGAGTCCAAGACCCTAGGCCCTTCCG GAGCAGACCGCGTTCAGTTCCTGATGGAAGCTAACGAGGGGCAGACAAGG GGCACCGTGGATGCGGTCGCCTCGAGCGGCGAGAAGTCCCGGCTCCTGCT TCTCCTGGAGACCCGGCTGCCGCCGCCCCAAGCGCGGTCGACGTTCGAAG TCGGGGACCGCCGTGGCGGGGTCGTAGGCGAAGAGGGCGGTACGGCAGAA GACGTTGATGCTGACGGCGATGCTGCTGGAACGGCGGCTGGTGGTGGTAG TGGTGTTGTTCGCGTGCCGCCGTGCGCGGTGCTGTACGATGAGATCGATG CTCATGTCGGCGGGAGGACGGCCGTGGCCGTAGGGAGGCTGCTGGCGAAC CAGGGCCGAGACTCACAGGTGAGAGAGAGTGAGCTGCTGCGCGTTTGTCG TTTTTTGTCGTGTGGGTCGCTGGTATGCAGCATTGCTGCAGCTTTTTCTG GTGTGATTGAAAGAACACATGCATGCGCTACAGCCTGCTGCTGCTGCGTG TCCTGTTTTGTCTTACGCTGCTGGTCATGACGACTTCCCCCTGCGCTCGC AACGACAATCATGGATGGACACCCAGGTGGTAGTCGTGACCCACACGGCG TCCGTCGCAGCACTGGCCGACCAGCACTTGGTCGTCGACAAGGCCTTAAC CGACGCAACGGCGGTGATGGGATCTGCCGGCACCGACATCAGGAGCATCA GCGGCAGCAGCGGCGGCAGCAGCAGCGGCAGCAGAGGCAGTGGAGGCGGC GGGGCGTGCGATACGCTCGAAGCGGCCGCGGCATCATTACCACCACCACC AACAAGGCCGCCGTCGCCGCCCGCGGCAGACGGTGTTGACGAACCGTTCA CTTCCTCGGCACGGCGGTCTCGACGGCAAGGAAAGGGGCGGGGCGGGGTG AGTGTCTCGATACGCGAGGTCAACGGGCGAGAAAGAGAGGAGGAGCTTGC TCGAATGGCGGCCGGGGATATGGGGGGAGGGGCGGCAGCGGAGCTCGCTC GAGAGATGTTGCGGTACAGCCGTCGGCAGGGCTCGTAGCCCTCCGCATCT GACGTTCGGCGACTGTACGTTTTTTCGACGCCGACGGGATCGAGGAGGTT CGGAATCTGGTTCGTTACCAGCGGGCGCGTTGGACACGGCGAGACGTGCG GGGCACTCGTGTTGACTTTGCCATATGCCACACCGGAGGCAACGCTCTTT GAGTCCTGCATCGATGGCGATGTTTGTTTGTATGCATTGAGCGAACAAGG GTTTCGCCACAGTAGGTAGCACGTCGTTCGTTTAGACCAAGGACGGCTTG AGCTTCCCCAGGTTAAGACGGATGAGTGGGCGTGGCTGAGACCGCCCGGT TGAGGTGAAGGAGGCGTTGTTCTCACACGGCCGCTCGAAGTATGTGTGCC TGCGCCGTGGGCCGTGAACCATGCACATCGCTCTTTCGCTTTCTCCACAA GATGCTCTGCACATCTTCGGGAAAGACTCCTAGAGCGCTTTGTGCTCGAG GTCGACACAATCGCTTGTTTTTTGTGTGGAGGTGTATTTGACAAGAGCTT CACGTTACAGCATCGCTGGTTGCGTAACACCCTGGCTTTTAGGTTTGAAA GCTTCGATTACTTCGAATTTCGCATCGGACAAGTTTTCCGATACCCGCGG ACTGGCTGTTTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8459:4364..6525-

>mRNA_Ecto-sp13_S_contig8459.19840.1 ID=mRNA_Ecto-sp13_S_contig8459.19840.1|Name=mRNA_Ecto-sp13_S_contig8459.19840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8459:4364..6525- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCAGACGTGGGCTTAGAGGGCGCCACCTTCAAGGTCTTAGTAGA
AGAGTCCAAGACCCTAGGCCCTTCCGGAGCAGACCGCGTTCAGTTCCTGA
TGGAAGCTAACGAGGGGCAGACAAGGGGCACCGTGGATGCGGTCGCCTCG
AGCGGCGAGAAGTCCCGGCTCCTGCTTCTCCTGGAGACCCGGCTGCCGCC
GCCCCAAGCGCGGTCGACGTTCGAAGTCGGGGACCGCCGTGGCGGGGTCG
TAGGCGAAGAGGGCGGTACGGCAGAAGACGTTGATGCTGACGGCGATGCT
GCTGGAACGGCGGCTGGTGGTGGTAGTGGTGTTGTTCGCGTGCCGCCGTG
CGCGGTGCTGTACGATGAGATCGATGCTCATGTCGGCGGGAGGACGGCCG
TGGCCGTAGGGAGGCTGCTGGCGAACCAGGGCCGAGACTCACAGGTGGTA
GTCGTGACCCACACGGCGTCCGTCGCAGCACTGGCCGACCAGCACTTGGT
CGTCGACAAGGCCTTAACCGACGCAACGGCGGTGATGGGATCTGCCGGCA
CCGACATCAGGAGCATCAGCGGCAGCAGCGGCGGCAGCAGCAGCGGCAGC
AGAGGCAGTGGAGGCGGCGGGGCGTGCGATACGCTCGAAGCGGCCGCGGC
ATCATTACCACCACCACCAACAAGGCCGCCGTCGCCGCCCGCGGCAGACG
GTGTTGACGAACCGTTCACTTCCTCGGCACGGCGGTCTCGACGGCAAGGA
AAGGGGCGGGGCGGGGTGAGTGTCTCGATACGCGAGGTCAACGGGCGAGA
AAGAGAGGAGGAGCTTGCTCGAATGGCGGCCGGGGATATGGGGGGAGGGG
CGGCAGCGGAGCTCGCTCGAGAGATGTTGCGGTACAGCCGTCGGCAGGGC
TCGTAG
back to top